Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00256

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00255 and CCNA_00256 are separated by 18 nucleotidesCCNA_00256 and CCNA_00257 are separated by 118 nucleotides CCNA_00255: CCNA_00255 - esterase, at 268,063 to 269,187 _00255 CCNA_00256: CCNA_00256 - pyridoxine kinase, at 269,206 to 270,057 _00256 CCNA_00257: CCNA_00257 - adenosylhomocysteinase, at 270,176 to 271,567 _00257 Position (kb) 269 270 271Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 268.281 kb on - strand, within CCNA_00255at 268.384 kb on - strand, within CCNA_00255at 268.615 kb on + strand, within CCNA_00255at 268.718 kb on - strand, within CCNA_00255at 268.765 kb on - strand, within CCNA_00255at 269.140 kb on + strandat 269.211 kb on - strandat 269.212 kb on - strandat 269.287 kb on + strandat 269.287 kb on + strandat 269.312 kb on + strand, within CCNA_00256at 269.320 kb on - strand, within CCNA_00256at 269.356 kb on + strand, within CCNA_00256at 269.388 kb on - strand, within CCNA_00256at 269.429 kb on + strand, within CCNA_00256at 269.433 kb on - strand, within CCNA_00256at 269.437 kb on - strand, within CCNA_00256at 269.437 kb on - strand, within CCNA_00256at 269.446 kb on + strand, within CCNA_00256at 269.454 kb on - strand, within CCNA_00256at 269.467 kb on + strand, within CCNA_00256at 269.467 kb on + strand, within CCNA_00256at 269.475 kb on - strand, within CCNA_00256at 269.475 kb on - strand, within CCNA_00256at 269.490 kb on - strand, within CCNA_00256at 269.490 kb on - strand, within CCNA_00256at 269.499 kb on + strand, within CCNA_00256at 269.507 kb on - strand, within CCNA_00256at 269.512 kb on - strand, within CCNA_00256at 269.512 kb on - strand, within CCNA_00256at 269.512 kb on - strand, within CCNA_00256at 269.527 kb on - strand, within CCNA_00256at 269.537 kb on - strand, within CCNA_00256at 269.573 kb on + strand, within CCNA_00256at 269.594 kb on + strand, within CCNA_00256at 269.600 kb on - strand, within CCNA_00256at 269.602 kb on + strand, within CCNA_00256at 269.608 kb on + strand, within CCNA_00256at 269.642 kb on - strand, within CCNA_00256at 269.666 kb on + strand, within CCNA_00256at 269.671 kb on + strand, within CCNA_00256at 269.671 kb on + strand, within CCNA_00256at 269.679 kb on - strand, within CCNA_00256at 269.679 kb on - strand, within CCNA_00256at 269.679 kb on - strand, within CCNA_00256at 269.679 kb on - strand, within CCNA_00256at 269.701 kb on - strand, within CCNA_00256at 269.717 kb on + strand, within CCNA_00256at 269.725 kb on + strand, within CCNA_00256at 269.725 kb on + strand, within CCNA_00256at 269.725 kb on + strand, within CCNA_00256at 269.725 kb on + strand, within CCNA_00256at 269.733 kb on - strandat 269.733 kb on - strand, within CCNA_00256at 269.733 kb on - strand, within CCNA_00256at 269.773 kb on - strand, within CCNA_00256at 269.773 kb on - strand, within CCNA_00256at 269.801 kb on - strand, within CCNA_00256at 269.819 kb on + strand, within CCNA_00256at 269.824 kb on + strand, within CCNA_00256at 269.827 kb on - strand, within CCNA_00256at 269.864 kb on - strand, within CCNA_00256at 269.872 kb on - strand, within CCNA_00256at 269.873 kb on - strand, within CCNA_00256at 269.876 kb on + strand, within CCNA_00256at 269.876 kb on + strand, within CCNA_00256at 269.876 kb on + strand, within CCNA_00256at 269.878 kb on + strand, within CCNA_00256at 269.884 kb on - strand, within CCNA_00256at 269.884 kb on - strand, within CCNA_00256at 269.884 kb on - strand, within CCNA_00256at 269.925 kb on - strand, within CCNA_00256at 269.969 kb on + strand, within CCNA_00256at 269.969 kb on + strand, within CCNA_00256at 269.969 kb on + strand, within CCNA_00256at 269.969 kb on + strand, within CCNA_00256at 269.969 kb on + strand, within CCNA_00256at 269.969 kb on + strand, within CCNA_00256at 269.977 kb on - strandat 269.977 kb on - strandat 269.977 kb on - strandat 269.977 kb on - strandat 269.977 kb on - strandat 269.977 kb on - strandat 269.977 kb on - strandat 269.979 kb on + strandat 269.979 kb on + strandat 269.987 kb on + strandat 269.987 kb on + strandat 269.992 kb on + strandat 269.992 kb on + strandat 269.995 kb on - strandat 270.000 kb on - strandat 270.000 kb on - strandat 270.000 kb on - strandat 270.000 kb on - strandat 270.000 kb on - strandat 270.000 kb on - strandat 270.000 kb on - strandat 270.010 kb on + strandat 270.064 kb on + strandat 270.084 kb on + strandat 270.084 kb on + strandat 270.084 kb on + strandat 270.084 kb on + strandat 270.084 kb on + strandat 270.084 kb on + strandat 270.092 kb on - strandat 270.092 kb on - strandat 270.092 kb on - strandat 270.092 kb on - strandat 270.092 kb on - strandat 270.092 kb on - strandat 270.092 kb on - strandat 270.092 kb on - strandat 270.092 kb on - strandat 270.092 kb on - strandat 270.092 kb on - strandat 270.092 kb on - strandat 270.141 kb on + strandat 270.248 kb on - strandat 270.328 kb on - strand, within CCNA_00257at 270.374 kb on - strand, within CCNA_00257at 270.411 kb on - strand, within CCNA_00257at 270.694 kb on - strand, within CCNA_00257at 270.702 kb on - strandat 270.702 kb on - strand, within CCNA_00257at 270.818 kb on - strandat 270.872 kb on - strand, within CCNA_00257at 270.896 kb on - strand, within CCNA_00257at 270.896 kb on - strand, within CCNA_00257at 270.911 kb on - strand, within CCNA_00257at 270.940 kb on - strand, within CCNA_00257at 270.955 kb on - strand, within CCNA_00257at 270.996 kb on - strand, within CCNA_00257

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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268,281 - CCNA_00255 0.19 +0.5
268,384 - CCNA_00255 0.29 -0.5
268,615 + CCNA_00255 0.49 -0.0
268,718 - CCNA_00255 0.58 +1.5
268,765 - CCNA_00255 0.62 +1.0
269,140 + +1.0
269,211 - +0.6
269,212 - +1.3
269,287 + -0.7
269,287 + +2.0
269,312 + CCNA_00256 0.12 +0.5
269,320 - CCNA_00256 0.13 +0.8
269,356 + CCNA_00256 0.18 +0.6
269,388 - CCNA_00256 0.21 +2.1
269,429 + CCNA_00256 0.26 +2.4
269,433 - CCNA_00256 0.27 +0.9
269,437 - CCNA_00256 0.27 +1.4
269,437 - CCNA_00256 0.27 +1.0
269,446 + CCNA_00256 0.28 +0.3
269,454 - CCNA_00256 0.29 +0.1
269,467 + CCNA_00256 0.31 +2.2
269,467 + CCNA_00256 0.31 -0.1
269,475 - CCNA_00256 0.32 +1.1
269,475 - CCNA_00256 0.32 +1.4
269,490 - CCNA_00256 0.33 -0.8
269,490 - CCNA_00256 0.33 +0.3
269,499 + CCNA_00256 0.34 +1.2
269,507 - CCNA_00256 0.35 +0.9
269,512 - CCNA_00256 0.36 -0.1
269,512 - CCNA_00256 0.36 +1.1
269,512 - CCNA_00256 0.36 +0.2
269,527 - CCNA_00256 0.38 -0.6
269,537 - CCNA_00256 0.39 +1.6
269,573 + CCNA_00256 0.43 -0.4
269,594 + CCNA_00256 0.46 -0.5
269,600 - CCNA_00256 0.46 +1.6
269,602 + CCNA_00256 0.46 -0.7
269,608 + CCNA_00256 0.47 +1.5
269,642 - CCNA_00256 0.51 +0.7
269,666 + CCNA_00256 0.54 -2.4
269,671 + CCNA_00256 0.55 +0.6
269,671 + CCNA_00256 0.55 -0.9
269,679 - CCNA_00256 0.56 +1.9
269,679 - CCNA_00256 0.56 +1.0
269,679 - CCNA_00256 0.56 +1.6
269,679 - CCNA_00256 0.56 +0.6
269,701 - CCNA_00256 0.58 +0.9
269,717 + CCNA_00256 0.60 -1.3
269,725 + CCNA_00256 0.61 +0.2
269,725 + CCNA_00256 0.61 -1.3
269,725 + CCNA_00256 0.61 -2.2
269,725 + CCNA_00256 0.61 +1.2
269,733 - +4.0
269,733 - CCNA_00256 0.62 +2.0
269,733 - CCNA_00256 0.62 +0.5
269,773 - CCNA_00256 0.67 +0.1
269,773 - CCNA_00256 0.67 +0.8
269,801 - CCNA_00256 0.70 +1.1
269,819 + CCNA_00256 0.72 -3.4
269,824 + CCNA_00256 0.73 -0.5
269,827 - CCNA_00256 0.73 +1.1
269,864 - CCNA_00256 0.77 +1.6
269,872 - CCNA_00256 0.78 +0.4
269,873 - CCNA_00256 0.78 +2.0
269,876 + CCNA_00256 0.79 -0.5
269,876 + CCNA_00256 0.79 -0.7
269,876 + CCNA_00256 0.79 -0.6
269,878 + CCNA_00256 0.79 -0.7
269,884 - CCNA_00256 0.80 -1.0
269,884 - CCNA_00256 0.80 +1.3
269,884 - CCNA_00256 0.80 +0.9
269,925 - CCNA_00256 0.84 +2.0
269,969 + CCNA_00256 0.90 -0.1
269,969 + CCNA_00256 0.90 -0.1
269,969 + CCNA_00256 0.90 +1.0
269,969 + CCNA_00256 0.90 +2.4
269,969 + CCNA_00256 0.90 -2.2
269,969 + CCNA_00256 0.90 +0.8
269,977 - +0.5
269,977 - +0.6
269,977 - -0.4
269,977 - -0.2
269,977 - +0.9
269,977 - +1.0
269,977 - +0.6
269,979 + +1.6
269,979 + +0.4
269,987 + -1.5
269,987 + -1.2
269,992 + -1.9
269,992 + -1.7
269,995 - -0.1
270,000 - -1.5
270,000 - -0.3
270,000 - -1.2
270,000 - +0.5
270,000 - +0.9
270,000 - -0.3
270,000 - -0.7
270,010 + +0.7
270,064 + -1.3
270,084 + -0.5
270,084 + +1.1
270,084 + -0.2
270,084 + +1.6
270,084 + -0.5
270,084 + -1.0
270,092 - -2.6
270,092 - -0.8
270,092 - +2.7
270,092 - -0.6
270,092 - +0.6
270,092 - -0.4
270,092 - +0.2
270,092 - +1.9
270,092 - -0.2
270,092 - -0.5
270,092 - -0.8
270,092 - -1.5
270,141 + +1.0
270,248 - +1.8
270,328 - CCNA_00257 0.11 +2.7
270,374 - CCNA_00257 0.14 +2.5
270,411 - CCNA_00257 0.17 +1.0
270,694 - CCNA_00257 0.37 +2.2
270,702 - +3.4
270,702 - CCNA_00257 0.38 +0.7
270,818 - +2.4
270,872 - CCNA_00257 0.50 +0.9
270,896 - CCNA_00257 0.52 +2.4
270,896 - CCNA_00257 0.52 +3.6
270,911 - CCNA_00257 0.53 +0.2
270,940 - CCNA_00257 0.55 +2.8
270,955 - CCNA_00257 0.56 +1.4
270,996 - CCNA_00257 0.59 +0.1

Or see this region's nucleotide sequence