Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00244

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00241 and CCNA_03917 are separated by 239 nucleotidesCCNA_03917 and CCNA_00243 are separated by 67 nucleotidesCCNA_00243 and CCNA_00244 are separated by 142 nucleotidesCCNA_00244 and CCNA_00245 are separated by 28 nucleotidesCCNA_00245 and CCNA_00246 are separated by 44 nucleotides CCNA_00241: CCNA_00241 - phosphocarrier protein HPr, at 255,722 to 256,000 _00241 CCNA_03917: CCNA_03917 - hypothetical protein, at 256,240 to 256,344 _03917 CCNA_00243: CCNA_00243 - hypothetical protein, at 256,412 to 256,810 _00243 CCNA_00244: CCNA_00244 - HAD superfamily phophatase, at 256,953 to 257,594 _00244 CCNA_00245: CCNA_00245 - pterin-4-alpha-carbinolamine dehydratase, at 257,623 to 257,907 _00245 CCNA_00246: CCNA_00246 - cyclohexanol dehydrogenase, at 257,952 to 258,737 _00246 Position (kb) 256 257 258Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 255.990 kb on - strandat 255.995 kb on + strandat 256.003 kb on - strandat 256.003 kb on - strandat 256.012 kb on + strandat 256.019 kb on + strandat 256.041 kb on + strandat 256.041 kb on + strandat 256.041 kb on + strandat 256.041 kb on + strandat 256.095 kb on + strandat 256.119 kb on + strandat 256.122 kb on - strandat 256.124 kb on + strandat 256.124 kb on + strandat 256.132 kb on - strandat 256.132 kb on - strandat 256.134 kb on + strandat 256.134 kb on + strandat 256.134 kb on + strandat 256.139 kb on - strandat 256.142 kb on - strandat 256.142 kb on - strandat 256.156 kb on - strandat 256.206 kb on + strandat 256.214 kb on - strandat 256.214 kb on - strandat 256.240 kb on + strandat 256.249 kb on - strandat 256.313 kb on + strand, within CCNA_03917at 256.313 kb on + strand, within CCNA_03917at 256.321 kb on - strand, within CCNA_03917at 256.321 kb on - strand, within CCNA_03917at 256.343 kb on - strandat 256.350 kb on - strandat 256.374 kb on + strandat 256.394 kb on + strandat 256.396 kb on - strandat 256.402 kb on - strandat 256.409 kb on - strandat 256.428 kb on + strandat 256.436 kb on - strandat 256.458 kb on - strand, within CCNA_00243at 256.479 kb on - strand, within CCNA_00243at 256.487 kb on - strand, within CCNA_00243at 256.533 kb on + strand, within CCNA_00243at 256.541 kb on - strand, within CCNA_00243at 256.541 kb on - strand, within CCNA_00243at 256.558 kb on + strand, within CCNA_00243at 256.575 kb on - strand, within CCNA_00243at 256.582 kb on - strand, within CCNA_00243at 256.614 kb on + strand, within CCNA_00243at 256.622 kb on - strand, within CCNA_00243at 256.791 kb on - strandat 256.819 kb on + strandat 256.860 kb on + strandat 256.892 kb on - strandat 256.991 kb on + strandat 256.991 kb on + strandat 256.999 kb on - strandat 256.999 kb on - strandat 256.999 kb on - strandat 257.024 kb on + strand, within CCNA_00244at 257.046 kb on + strand, within CCNA_00244at 257.046 kb on + strand, within CCNA_00244at 257.054 kb on - strand, within CCNA_00244at 257.074 kb on + strand, within CCNA_00244at 257.077 kb on - strand, within CCNA_00244at 257.088 kb on + strand, within CCNA_00244at 257.120 kb on + strand, within CCNA_00244at 257.147 kb on + strand, within CCNA_00244at 257.147 kb on + strand, within CCNA_00244at 257.147 kb on + strand, within CCNA_00244at 257.147 kb on + strand, within CCNA_00244at 257.155 kb on - strand, within CCNA_00244at 257.155 kb on - strand, within CCNA_00244at 257.155 kb on - strand, within CCNA_00244at 257.155 kb on - strand, within CCNA_00244at 257.173 kb on + strand, within CCNA_00244at 257.181 kb on - strand, within CCNA_00244at 257.191 kb on - strand, within CCNA_00244at 257.210 kb on - strand, within CCNA_00244at 257.251 kb on - strand, within CCNA_00244at 257.259 kb on + strand, within CCNA_00244at 257.264 kb on + strand, within CCNA_00244at 257.264 kb on + strand, within CCNA_00244at 257.264 kb on + strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.307 kb on + strand, within CCNA_00244at 257.316 kb on - strand, within CCNA_00244at 257.316 kb on - strand, within CCNA_00244at 257.328 kb on + strand, within CCNA_00244at 257.334 kb on - strand, within CCNA_00244at 257.364 kb on + strand, within CCNA_00244at 257.366 kb on + strand, within CCNA_00244at 257.366 kb on + strand, within CCNA_00244at 257.374 kb on - strand, within CCNA_00244at 257.378 kb on + strand, within CCNA_00244at 257.386 kb on + strand, within CCNA_00244at 257.394 kb on - strand, within CCNA_00244at 257.424 kb on + strand, within CCNA_00244at 257.444 kb on + strand, within CCNA_00244at 257.452 kb on - strand, within CCNA_00244at 257.495 kb on + strand, within CCNA_00244at 257.535 kb on + strandat 257.545 kb on + strandat 257.588 kb on + strandat 257.597 kb on + strandat 257.597 kb on + strandat 257.598 kb on + strandat 257.617 kb on + strandat 257.617 kb on + strandat 257.617 kb on + strandat 257.625 kb on - strandat 257.625 kb on - strandat 257.625 kb on - strandat 257.670 kb on + strand, within CCNA_00245at 257.670 kb on + strand, within CCNA_00245at 257.672 kb on - strand, within CCNA_00245at 257.672 kb on - strand, within CCNA_00245at 257.678 kb on - strand, within CCNA_00245at 257.691 kb on + strand, within CCNA_00245at 257.706 kb on + strand, within CCNA_00245at 257.714 kb on - strand, within CCNA_00245at 257.740 kb on + strand, within CCNA_00245at 257.787 kb on + strand, within CCNA_00245at 257.809 kb on + strand, within CCNA_00245at 257.809 kb on + strand, within CCNA_00245at 257.809 kb on + strand, within CCNA_00245at 257.809 kb on - strand, within CCNA_00245at 257.809 kb on - strand, within CCNA_00245at 257.817 kb on - strand, within CCNA_00245at 257.817 kb on - strand, within CCNA_00245at 257.817 kb on - strand, within CCNA_00245at 257.832 kb on + strand, within CCNA_00245at 257.855 kb on + strand, within CCNA_00245at 257.863 kb on + strand, within CCNA_00245at 257.886 kb on + strandat 257.895 kb on - strandat 257.953 kb on - strandat 257.960 kb on + strandat 257.960 kb on + strandat 257.962 kb on + strandat 258.014 kb on - strandat 258.038 kb on - strand, within CCNA_00246at 258.049 kb on - strand, within CCNA_00246at 258.073 kb on + strand, within CCNA_00246at 258.073 kb on + strand, within CCNA_00246at 258.103 kb on - strand, within CCNA_00246at 258.110 kb on + strand, within CCNA_00246at 258.138 kb on + strand, within CCNA_00246at 258.146 kb on - strand, within CCNA_00246at 258.146 kb on - strand, within CCNA_00246at 258.151 kb on + strand, within CCNA_00246at 258.153 kb on - strand, within CCNA_00246at 258.228 kb on - strand, within CCNA_00246at 258.277 kb on + strand, within CCNA_00246at 258.296 kb on + strand, within CCNA_00246at 258.305 kb on + strand, within CCNA_00246at 258.341 kb on + strand, within CCNA_00246at 258.343 kb on + strand, within CCNA_00246at 258.348 kb on + strand, within CCNA_00246at 258.430 kb on + strand, within CCNA_00246at 258.477 kb on + strand, within CCNA_00246at 258.477 kb on + strand, within CCNA_00246at 258.477 kb on + strand, within CCNA_00246at 258.477 kb on + strand, within CCNA_00246at 258.477 kb on + strand, within CCNA_00246at 258.482 kb on + strand, within CCNA_00246at 258.485 kb on - strand, within CCNA_00246at 258.490 kb on - strand, within CCNA_00246at 258.490 kb on - strand, within CCNA_00246at 258.494 kb on + strand, within CCNA_00246at 258.520 kb on + strand, within CCNA_00246at 258.544 kb on + strand, within CCNA_00246at 258.552 kb on - strand, within CCNA_00246at 258.557 kb on - strand, within CCNA_00246at 258.581 kb on + strand, within CCNA_00246at 258.585 kb on - strand, within CCNA_00246at 258.590 kb on - strand, within CCNA_00246at 258.590 kb on - strand, within CCNA_00246at 258.592 kb on + strand, within CCNA_00246

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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255,990 - +0.5
255,995 + +2.3
256,003 - +2.0
256,003 - -0.8
256,012 + +1.5
256,019 + +1.4
256,041 + +0.6
256,041 + +1.7
256,041 + +2.3
256,041 + +1.6
256,095 + +2.0
256,119 + -1.3
256,122 - -1.5
256,124 + +1.4
256,124 + +0.6
256,132 - -2.0
256,132 - -0.0
256,134 + -0.8
256,134 + -0.8
256,134 + -0.3
256,139 - -0.1
256,142 - +0.3
256,142 - -2.0
256,156 - -1.2
256,206 + -0.0
256,214 - +0.8
256,214 - +1.4
256,240 + +1.9
256,249 - +1.6
256,313 + CCNA_03917 0.70 +1.6
256,313 + CCNA_03917 0.70 -1.1
256,321 - CCNA_03917 0.77 +0.8
256,321 - CCNA_03917 0.77 +1.1
256,343 - +1.3
256,350 - +0.0
256,374 + +1.2
256,394 + -0.6
256,396 - +0.5
256,402 - +1.2
256,409 - +0.3
256,428 + -0.7
256,436 - +1.5
256,458 - CCNA_00243 0.12 +0.7
256,479 - CCNA_00243 0.17 +2.1
256,487 - CCNA_00243 0.19 +1.7
256,533 + CCNA_00243 0.30 +0.6
256,541 - CCNA_00243 0.32 +0.0
256,541 - CCNA_00243 0.32 +1.1
256,558 + CCNA_00243 0.37 -1.5
256,575 - CCNA_00243 0.41 -2.1
256,582 - CCNA_00243 0.43 +3.0
256,614 + CCNA_00243 0.51 -1.7
256,622 - CCNA_00243 0.53 -0.9
256,791 - -0.9
256,819 + +0.6
256,860 + +0.1
256,892 - -2.5
256,991 + +1.0
256,991 + -0.0
256,999 - +1.2
256,999 - -0.8
256,999 - -0.5
257,024 + CCNA_00244 0.11 -0.4
257,046 + CCNA_00244 0.14 +1.0
257,046 + CCNA_00244 0.14 -1.4
257,054 - CCNA_00244 0.16 +0.4
257,074 + CCNA_00244 0.19 -0.6
257,077 - CCNA_00244 0.19 +1.0
257,088 + CCNA_00244 0.21 -0.5
257,120 + CCNA_00244 0.26 -2.1
257,147 + CCNA_00244 0.30 -2.7
257,147 + CCNA_00244 0.30 -1.0
257,147 + CCNA_00244 0.30 -0.2
257,147 + CCNA_00244 0.30 +0.1
257,155 - CCNA_00244 0.31 +0.8
257,155 - CCNA_00244 0.31 +0.4
257,155 - CCNA_00244 0.31 -1.0
257,155 - CCNA_00244 0.31 -0.6
257,173 + CCNA_00244 0.34 +0.6
257,181 - CCNA_00244 0.36 -0.7
257,191 - CCNA_00244 0.37 +1.6
257,210 - CCNA_00244 0.40 +1.4
257,251 - CCNA_00244 0.46 +1.3
257,259 + CCNA_00244 0.48 -2.0
257,264 + CCNA_00244 0.48 -1.0
257,264 + CCNA_00244 0.48 -0.7
257,264 + CCNA_00244 0.48 +0.4
257,272 - CCNA_00244 0.50 -2.8
257,272 - CCNA_00244 0.50 +1.6
257,272 - CCNA_00244 0.50 -1.0
257,272 - CCNA_00244 0.50 -2.2
257,272 - CCNA_00244 0.50 -0.5
257,272 - CCNA_00244 0.50 +0.3
257,272 - CCNA_00244 0.50 -2.1
257,272 - CCNA_00244 0.50 +0.1
257,307 + CCNA_00244 0.55 +0.2
257,316 - CCNA_00244 0.57 -0.7
257,316 - CCNA_00244 0.57 -0.2
257,328 + CCNA_00244 0.58 -1.4
257,334 - CCNA_00244 0.59 -0.4
257,364 + CCNA_00244 0.64 +1.6
257,366 + CCNA_00244 0.64 -2.2
257,366 + CCNA_00244 0.64 -0.0
257,374 - CCNA_00244 0.66 -0.1
257,378 + CCNA_00244 0.66 +0.4
257,386 + CCNA_00244 0.67 -0.9
257,394 - CCNA_00244 0.69 +1.2
257,424 + CCNA_00244 0.73 +0.2
257,444 + CCNA_00244 0.76 -0.1
257,452 - CCNA_00244 0.78 -2.0
257,495 + CCNA_00244 0.84 +0.6
257,535 + -0.3
257,545 + +0.1
257,588 + -0.3
257,597 + -0.9
257,597 + +0.3
257,598 + -0.4
257,617 + -1.1
257,617 + +3.0
257,617 + +0.2
257,625 - +1.0
257,625 - -1.0
257,625 - -1.0
257,670 + CCNA_00245 0.16 -1.0
257,670 + CCNA_00245 0.16 -2.0
257,672 - CCNA_00245 0.17 +1.0
257,672 - CCNA_00245 0.17 -0.4
257,678 - CCNA_00245 0.19 +1.4
257,691 + CCNA_00245 0.24 -1.0
257,706 + CCNA_00245 0.29 -0.5
257,714 - CCNA_00245 0.32 -0.3
257,740 + CCNA_00245 0.41 -0.2
257,787 + CCNA_00245 0.58 -0.8
257,809 + CCNA_00245 0.65 -1.2
257,809 + CCNA_00245 0.65 +0.2
257,809 + CCNA_00245 0.65 -0.2
257,809 - CCNA_00245 0.65 -0.5
257,809 - CCNA_00245 0.65 +0.4
257,817 - CCNA_00245 0.68 -1.0
257,817 - CCNA_00245 0.68 -0.7
257,817 - CCNA_00245 0.68 -0.3
257,832 + CCNA_00245 0.73 -0.4
257,855 + CCNA_00245 0.81 -0.6
257,863 + CCNA_00245 0.84 -0.6
257,886 + -0.3
257,895 - -1.2
257,953 - +0.3
257,960 + -1.2
257,960 + -1.2
257,962 + -0.1
258,014 - -0.9
258,038 - CCNA_00246 0.11 +2.6
258,049 - CCNA_00246 0.12 +1.1
258,073 + CCNA_00246 0.15 +0.3
258,073 + CCNA_00246 0.15 -1.1
258,103 - CCNA_00246 0.19 -0.2
258,110 + CCNA_00246 0.20 -2.0
258,138 + CCNA_00246 0.24 +0.5
258,146 - CCNA_00246 0.25 +0.5
258,146 - CCNA_00246 0.25 +0.2
258,151 + CCNA_00246 0.25 -0.2
258,153 - CCNA_00246 0.26 -1.4
258,228 - CCNA_00246 0.35 +2.2
258,277 + CCNA_00246 0.41 +0.3
258,296 + CCNA_00246 0.44 -0.0
258,305 + CCNA_00246 0.45 -0.4
258,341 + CCNA_00246 0.49 +0.0
258,343 + CCNA_00246 0.50 +1.4
258,348 + CCNA_00246 0.50 -0.1
258,430 + CCNA_00246 0.61 -1.1
258,477 + CCNA_00246 0.67 +1.2
258,477 + CCNA_00246 0.67 -0.3
258,477 + CCNA_00246 0.67 -1.2
258,477 + CCNA_00246 0.67 -0.8
258,477 + CCNA_00246 0.67 +0.5
258,482 + CCNA_00246 0.67 -0.3
258,485 - CCNA_00246 0.68 -0.3
258,490 - CCNA_00246 0.68 -0.3
258,490 - CCNA_00246 0.68 -1.2
258,494 + CCNA_00246 0.69 +0.3
258,520 + CCNA_00246 0.72 +0.9
258,544 + CCNA_00246 0.75 +0.2
258,552 - CCNA_00246 0.76 -2.2
258,557 - CCNA_00246 0.77 +0.2
258,581 + CCNA_00246 0.80 +0.2
258,585 - CCNA_00246 0.81 -1.1
258,590 - CCNA_00246 0.81 -0.7
258,590 - CCNA_00246 0.81 -0.8
258,592 + CCNA_00246 0.81 -0.0

Or see this region's nucleotide sequence