Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00210

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00209 and CCNA_00210 are separated by 187 nucleotidesCCNA_00210 and CCNA_00211 are separated by 159 nucleotides CCNA_00209: CCNA_00209 - undecaprenyl-phosphomannose:protein mannosyltransferase, at 223,353 to 224,927 _00209 CCNA_00210: CCNA_00210 - TonB-dependent receptor, at 225,115 to 227,526 _00210 CCNA_00211: CCNA_00211 - Porphyromonas-type peptidyl-arginine deiminase, at 227,686 to 228,693 _00211 Position (kb) 225 226 227 228Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 224.136 kb on + strand, within CCNA_00209at 224.141 kb on - strand, within CCNA_00209at 224.141 kb on - strand, within CCNA_00209at 224.187 kb on - strand, within CCNA_00209at 224.197 kb on - strand, within CCNA_00209at 224.223 kb on + strand, within CCNA_00209at 224.231 kb on - strand, within CCNA_00209at 224.231 kb on - strand, within CCNA_00209at 224.231 kb on - strand, within CCNA_00209at 224.231 kb on - strand, within CCNA_00209at 224.276 kb on + strand, within CCNA_00209at 224.284 kb on - strand, within CCNA_00209at 224.301 kb on - strand, within CCNA_00209at 224.301 kb on - strand, within CCNA_00209at 224.370 kb on + strand, within CCNA_00209at 224.378 kb on - strand, within CCNA_00209at 224.384 kb on - strand, within CCNA_00209at 224.420 kb on - strand, within CCNA_00209at 224.425 kb on - strand, within CCNA_00209at 224.480 kb on + strand, within CCNA_00209at 224.492 kb on - strand, within CCNA_00209at 224.502 kb on - strand, within CCNA_00209at 224.545 kb on - strand, within CCNA_00209at 224.604 kb on - strand, within CCNA_00209at 224.644 kb on + strand, within CCNA_00209at 224.710 kb on + strand, within CCNA_00209at 224.789 kb on - strandat 224.789 kb on - strandat 224.789 kb on - strandat 224.805 kb on - strandat 224.823 kb on - strandat 224.823 kb on - strandat 224.886 kb on + strandat 224.886 kb on + strandat 224.932 kb on - strandat 224.934 kb on + strandat 224.993 kb on + strandat 225.127 kb on + strandat 225.138 kb on + strandat 225.143 kb on + strandat 225.146 kb on - strandat 225.148 kb on + strandat 225.148 kb on + strandat 225.148 kb on + strandat 225.148 kb on + strandat 225.156 kb on - strandat 225.156 kb on - strandat 225.181 kb on + strandat 225.181 kb on + strandat 225.247 kb on + strandat 225.249 kb on + strandat 225.273 kb on + strandat 225.301 kb on + strandat 225.340 kb on + strandat 225.340 kb on + strandat 225.472 kb on - strand, within CCNA_00210at 225.472 kb on - strand, within CCNA_00210at 225.508 kb on - strand, within CCNA_00210at 225.545 kb on - strand, within CCNA_00210at 225.562 kb on + strand, within CCNA_00210at 225.572 kb on + strand, within CCNA_00210at 225.606 kb on - strand, within CCNA_00210at 225.606 kb on - strand, within CCNA_00210at 225.622 kb on + strand, within CCNA_00210at 225.629 kb on - strand, within CCNA_00210at 225.652 kb on + strand, within CCNA_00210at 225.653 kb on - strand, within CCNA_00210at 225.691 kb on + strand, within CCNA_00210at 225.691 kb on + strand, within CCNA_00210at 225.691 kb on + strand, within CCNA_00210at 225.691 kb on + strand, within CCNA_00210at 225.693 kb on + strand, within CCNA_00210at 225.693 kb on + strand, within CCNA_00210at 225.699 kb on - strand, within CCNA_00210at 225.699 kb on - strand, within CCNA_00210at 225.708 kb on + strand, within CCNA_00210at 225.817 kb on - strand, within CCNA_00210at 225.846 kb on - strand, within CCNA_00210at 225.899 kb on + strand, within CCNA_00210at 225.907 kb on - strand, within CCNA_00210at 225.926 kb on + strand, within CCNA_00210at 225.981 kb on + strand, within CCNA_00210at 225.981 kb on + strand, within CCNA_00210at 226.016 kb on + strand, within CCNA_00210at 226.034 kb on + strand, within CCNA_00210at 226.034 kb on + strand, within CCNA_00210at 226.034 kb on + strand, within CCNA_00210at 226.034 kb on + strand, within CCNA_00210at 226.049 kb on + strand, within CCNA_00210at 226.069 kb on + strand, within CCNA_00210at 226.095 kb on + strand, within CCNA_00210at 226.140 kb on + strand, within CCNA_00210at 226.148 kb on - strand, within CCNA_00210at 226.179 kb on - strand, within CCNA_00210at 226.179 kb on - strand, within CCNA_00210at 226.184 kb on + strand, within CCNA_00210at 226.189 kb on + strand, within CCNA_00210at 226.189 kb on + strand, within CCNA_00210at 226.189 kb on + strand, within CCNA_00210at 226.197 kb on - strand, within CCNA_00210at 226.210 kb on - strand, within CCNA_00210at 226.228 kb on + strand, within CCNA_00210at 226.228 kb on + strand, within CCNA_00210at 226.230 kb on + strand, within CCNA_00210at 226.238 kb on - strand, within CCNA_00210at 226.245 kb on + strandat 226.248 kb on - strand, within CCNA_00210at 226.248 kb on - strand, within CCNA_00210at 226.317 kb on + strand, within CCNA_00210at 226.319 kb on + strand, within CCNA_00210at 226.319 kb on + strand, within CCNA_00210at 226.327 kb on - strand, within CCNA_00210at 226.327 kb on - strand, within CCNA_00210at 226.336 kb on + strand, within CCNA_00210at 226.336 kb on + strand, within CCNA_00210at 226.393 kb on - strand, within CCNA_00210at 226.431 kb on + strand, within CCNA_00210at 226.446 kb on + strand, within CCNA_00210at 226.446 kb on + strand, within CCNA_00210at 226.454 kb on - strand, within CCNA_00210at 226.501 kb on + strand, within CCNA_00210at 226.506 kb on + strand, within CCNA_00210at 226.512 kb on + strand, within CCNA_00210at 226.512 kb on + strand, within CCNA_00210at 226.512 kb on + strand, within CCNA_00210at 226.602 kb on - strand, within CCNA_00210at 226.626 kb on + strand, within CCNA_00210at 226.638 kb on + strand, within CCNA_00210at 226.638 kb on + strand, within CCNA_00210at 226.638 kb on + strand, within CCNA_00210at 226.640 kb on + strand, within CCNA_00210at 226.645 kb on + strand, within CCNA_00210at 226.646 kb on + strand, within CCNA_00210at 226.646 kb on + strand, within CCNA_00210at 226.646 kb on + strand, within CCNA_00210at 226.687 kb on + strandat 226.687 kb on + strand, within CCNA_00210at 226.687 kb on + strand, within CCNA_00210at 226.695 kb on - strand, within CCNA_00210at 226.719 kb on - strand, within CCNA_00210at 226.723 kb on + strand, within CCNA_00210at 226.768 kb on + strand, within CCNA_00210at 226.790 kb on + strand, within CCNA_00210at 226.798 kb on - strand, within CCNA_00210at 226.798 kb on - strand, within CCNA_00210at 226.800 kb on + strand, within CCNA_00210at 226.800 kb on + strand, within CCNA_00210at 226.806 kb on + strand, within CCNA_00210at 226.808 kb on - strand, within CCNA_00210at 226.814 kb on - strand, within CCNA_00210at 226.814 kb on - strand, within CCNA_00210at 226.814 kb on - strand, within CCNA_00210at 226.816 kb on + strand, within CCNA_00210at 226.816 kb on + strand, within CCNA_00210at 226.816 kb on + strand, within CCNA_00210at 226.816 kb on + strand, within CCNA_00210at 226.816 kb on + strand, within CCNA_00210at 226.816 kb on + strand, within CCNA_00210at 226.816 kb on + strand, within CCNA_00210at 226.824 kb on - strand, within CCNA_00210at 226.824 kb on - strand, within CCNA_00210at 226.824 kb on - strand, within CCNA_00210at 226.831 kb on + strand, within CCNA_00210at 226.864 kb on + strand, within CCNA_00210at 226.864 kb on - strand, within CCNA_00210at 226.871 kb on + strand, within CCNA_00210at 226.872 kb on - strand, within CCNA_00210at 226.886 kb on + strand, within CCNA_00210at 226.903 kb on + strand, within CCNA_00210at 226.917 kb on - strand, within CCNA_00210at 226.920 kb on + strand, within CCNA_00210at 226.928 kb on - strand, within CCNA_00210at 226.977 kb on + strand, within CCNA_00210at 227.013 kb on + strand, within CCNA_00210at 227.076 kb on + strandat 227.079 kb on - strand, within CCNA_00210at 227.092 kb on - strand, within CCNA_00210at 227.094 kb on + strand, within CCNA_00210at 227.161 kb on + strand, within CCNA_00210at 227.168 kb on + strand, within CCNA_00210at 227.175 kb on - strand, within CCNA_00210at 227.187 kb on + strand, within CCNA_00210at 227.187 kb on + strand, within CCNA_00210at 227.189 kb on - strand, within CCNA_00210at 227.195 kb on - strand, within CCNA_00210at 227.215 kb on + strand, within CCNA_00210at 227.261 kb on + strand, within CCNA_00210at 227.261 kb on + strand, within CCNA_00210at 227.263 kb on - strand, within CCNA_00210at 227.292 kb on + strandat 227.329 kb on + strandat 227.340 kb on + strandat 227.345 kb on + strandat 227.345 kb on + strandat 227.353 kb on - strandat 227.362 kb on + strandat 227.372 kb on + strandat 227.372 kb on + strandat 227.377 kb on + strandat 227.385 kb on - strandat 227.408 kb on + strandat 227.432 kb on + strandat 227.462 kb on + strandat 227.473 kb on + strandat 227.520 kb on + strandat 227.520 kb on + strandat 227.528 kb on - strandat 227.528 kb on - strandat 227.550 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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224,136 + CCNA_00209 0.50 +0.3
224,141 - CCNA_00209 0.50 +0.5
224,141 - CCNA_00209 0.50 -0.3
224,187 - CCNA_00209 0.53 +0.6
224,197 - CCNA_00209 0.54 +0.8
224,223 + CCNA_00209 0.55 +0.8
224,231 - CCNA_00209 0.56 -2.1
224,231 - CCNA_00209 0.56 -0.7
224,231 - CCNA_00209 0.56 -1.2
224,231 - CCNA_00209 0.56 -1.2
224,276 + CCNA_00209 0.59 -0.1
224,284 - CCNA_00209 0.59 -1.4
224,301 - CCNA_00209 0.60 -0.3
224,301 - CCNA_00209 0.60 -0.0
224,370 + CCNA_00209 0.65 -1.3
224,378 - CCNA_00209 0.65 +0.9
224,384 - CCNA_00209 0.65 -1.4
224,420 - CCNA_00209 0.68 -1.2
224,425 - CCNA_00209 0.68 -0.0
224,480 + CCNA_00209 0.72 -0.9
224,492 - CCNA_00209 0.72 +0.4
224,502 - CCNA_00209 0.73 -0.2
224,545 - CCNA_00209 0.76 +2.2
224,604 - CCNA_00209 0.79 +0.4
224,644 + CCNA_00209 0.82 -0.2
224,710 + CCNA_00209 0.86 +0.4
224,789 - +1.6
224,789 - -1.0
224,789 - -0.4
224,805 - +0.4
224,823 - +0.6
224,823 - -0.3
224,886 + -0.1
224,886 + +0.5
224,932 - +0.1
224,934 + +0.9
224,993 + -0.9
225,127 + +1.6
225,138 + +3.0
225,143 + +1.7
225,146 - +0.8
225,148 + +2.8
225,148 + +1.8
225,148 + +2.8
225,148 + +2.1
225,156 - +1.2
225,156 - -0.7
225,181 + +2.3
225,181 + +2.9
225,247 + +3.2
225,249 + +2.6
225,273 + +2.4
225,301 + +3.3
225,340 + +2.6
225,340 + +3.0
225,472 - CCNA_00210 0.15 -0.9
225,472 - CCNA_00210 0.15 +0.3
225,508 - CCNA_00210 0.16 -0.1
225,545 - CCNA_00210 0.18 +0.5
225,562 + CCNA_00210 0.19 +3.2
225,572 + CCNA_00210 0.19 +2.6
225,606 - CCNA_00210 0.20 +0.6
225,606 - CCNA_00210 0.20 -1.3
225,622 + CCNA_00210 0.21 +2.9
225,629 - CCNA_00210 0.21 +0.6
225,652 + CCNA_00210 0.22 +3.5
225,653 - CCNA_00210 0.22 -0.1
225,691 + CCNA_00210 0.24 +1.8
225,691 + CCNA_00210 0.24 +2.4
225,691 + CCNA_00210 0.24 +2.7
225,691 + CCNA_00210 0.24 +2.6
225,693 + CCNA_00210 0.24 +2.9
225,693 + CCNA_00210 0.24 +1.7
225,699 - CCNA_00210 0.24 +0.3
225,699 - CCNA_00210 0.24 -0.8
225,708 + CCNA_00210 0.25 +2.3
225,817 - CCNA_00210 0.29 -1.6
225,846 - CCNA_00210 0.30 -0.9
225,899 + CCNA_00210 0.33 +2.8
225,907 - CCNA_00210 0.33 +1.4
225,926 + CCNA_00210 0.34 +3.5
225,981 + CCNA_00210 0.36 +2.6
225,981 + CCNA_00210 0.36 +2.6
226,016 + CCNA_00210 0.37 +2.9
226,034 + CCNA_00210 0.38 +4.0
226,034 + CCNA_00210 0.38 +3.3
226,034 + CCNA_00210 0.38 +3.4
226,034 + CCNA_00210 0.38 +2.7
226,049 + CCNA_00210 0.39 +3.3
226,069 + CCNA_00210 0.40 +3.9
226,095 + CCNA_00210 0.41 +3.5
226,140 + CCNA_00210 0.42 +3.8
226,148 - CCNA_00210 0.43 +0.8
226,179 - CCNA_00210 0.44 -2.1
226,179 - CCNA_00210 0.44 -1.7
226,184 + CCNA_00210 0.44 +2.8
226,189 + CCNA_00210 0.45 +3.3
226,189 + CCNA_00210 0.45 +2.8
226,189 + CCNA_00210 0.45 +3.8
226,197 - CCNA_00210 0.45 -0.2
226,210 - CCNA_00210 0.45 +0.1
226,228 + CCNA_00210 0.46 +3.5
226,228 + CCNA_00210 0.46 +3.4
226,230 + CCNA_00210 0.46 +4.1
226,238 - CCNA_00210 0.47 -0.2
226,245 + +5.0
226,248 - CCNA_00210 0.47 -1.9
226,248 - CCNA_00210 0.47 -0.4
226,317 + CCNA_00210 0.50 +3.2
226,319 + CCNA_00210 0.50 +2.9
226,319 + CCNA_00210 0.50 +2.6
226,327 - CCNA_00210 0.50 -1.8
226,327 - CCNA_00210 0.50 -1.4
226,336 + CCNA_00210 0.51 +3.4
226,336 + CCNA_00210 0.51 +3.8
226,393 - CCNA_00210 0.53 -1.5
226,431 + CCNA_00210 0.55 +3.5
226,446 + CCNA_00210 0.55 +3.0
226,446 + CCNA_00210 0.55 +2.9
226,454 - CCNA_00210 0.56 -0.3
226,501 + CCNA_00210 0.57 +3.7
226,506 + CCNA_00210 0.58 +3.2
226,512 + CCNA_00210 0.58 +3.0
226,512 + CCNA_00210 0.58 +2.8
226,512 + CCNA_00210 0.58 +3.8
226,602 - CCNA_00210 0.62 +1.0
226,626 + CCNA_00210 0.63 +3.8
226,638 + CCNA_00210 0.63 +3.8
226,638 + CCNA_00210 0.63 +3.8
226,638 + CCNA_00210 0.63 +3.9
226,640 + CCNA_00210 0.63 +3.5
226,645 + CCNA_00210 0.63 +3.4
226,646 + CCNA_00210 0.63 +3.2
226,646 + CCNA_00210 0.63 +3.5
226,646 + CCNA_00210 0.63 +3.7
226,687 + +4.3
226,687 + CCNA_00210 0.65 +3.3
226,687 + CCNA_00210 0.65 +3.3
226,695 - CCNA_00210 0.66 -0.1
226,719 - CCNA_00210 0.67 -1.1
226,723 + CCNA_00210 0.67 +3.3
226,768 + CCNA_00210 0.69 +3.3
226,790 + CCNA_00210 0.69 +2.8
226,798 - CCNA_00210 0.70 +1.1
226,798 - CCNA_00210 0.70 +1.2
226,800 + CCNA_00210 0.70 +3.3
226,800 + CCNA_00210 0.70 +3.8
226,806 + CCNA_00210 0.70 +3.1
226,808 - CCNA_00210 0.70 +0.4
226,814 - CCNA_00210 0.70 -0.4
226,814 - CCNA_00210 0.70 -0.5
226,814 - CCNA_00210 0.70 -0.6
226,816 + CCNA_00210 0.71 +3.6
226,816 + CCNA_00210 0.71 +3.2
226,816 + CCNA_00210 0.71 +3.5
226,816 + CCNA_00210 0.71 +2.9
226,816 + CCNA_00210 0.71 +4.5
226,816 + CCNA_00210 0.71 +3.4
226,816 + CCNA_00210 0.71 +3.3
226,824 - CCNA_00210 0.71 -0.0
226,824 - CCNA_00210 0.71 +0.2
226,824 - CCNA_00210 0.71 -0.4
226,831 + CCNA_00210 0.71 +3.3
226,864 + CCNA_00210 0.73 +3.2
226,864 - CCNA_00210 0.73 -0.2
226,871 + CCNA_00210 0.73 +2.9
226,872 - CCNA_00210 0.73 -1.8
226,886 + CCNA_00210 0.73 +3.1
226,903 + CCNA_00210 0.74 +3.3
226,917 - CCNA_00210 0.75 -0.6
226,920 + CCNA_00210 0.75 +3.3
226,928 - CCNA_00210 0.75 +1.6
226,977 + CCNA_00210 0.77 +3.9
227,013 + CCNA_00210 0.79 +3.5
227,076 + +3.0
227,079 - CCNA_00210 0.81 -0.8
227,092 - CCNA_00210 0.82 -1.3
227,094 + CCNA_00210 0.82 +3.4
227,161 + CCNA_00210 0.85 +3.9
227,168 + CCNA_00210 0.85 +3.7
227,175 - CCNA_00210 0.85 +0.1
227,187 + CCNA_00210 0.86 +3.8
227,187 + CCNA_00210 0.86 +4.1
227,189 - CCNA_00210 0.86 -1.0
227,195 - CCNA_00210 0.86 -0.7
227,215 + CCNA_00210 0.87 +3.7
227,261 + CCNA_00210 0.89 +3.2
227,261 + CCNA_00210 0.89 +1.2
227,263 - CCNA_00210 0.89 +2.6
227,292 + +4.3
227,329 + +4.3
227,340 + +4.1
227,345 + +4.4
227,345 + +4.2
227,353 - -0.0
227,362 + +4.2
227,372 + +4.6
227,372 + +4.6
227,377 + +4.0
227,385 - -0.0
227,408 + +4.0
227,432 + +3.8
227,462 + +4.2
227,473 + +3.3
227,520 + +4.1
227,520 + +3.4
227,528 - +1.6
227,528 - -0.8
227,550 - +0.8

Or see this region's nucleotide sequence