Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00207

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00205 and CCNA_03916 overlap by 1 nucleotidesCCNA_03916 and CCNA_00206 overlap by 155 nucleotidesCCNA_00206 and CCNA_00207 overlap by 1 nucleotidesCCNA_00207 and CCNA_00208 are separated by 0 nucleotides CCNA_00205: CCNA_00205 - NAD(P)H-quinone reductase, at 220,241 to 220,822 _00205 CCNA_03916: CCNA_03916 - hypothetical protein, at 220,822 to 221,085 _03916 CCNA_00206: CCNA_00206 - succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A, at 220,931 to 221,641 _00206 CCNA_00207: CCNA_00207 - succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B, at 221,641 to 222,282 _00207 CCNA_00208: CCNA_00208 - type 1 glutamine amidotransferase (GATase1)-like domain protein, at 222,283 to 223,272 _00208 Position (kb) 221 222 223Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 220.688 kb on - strand, within CCNA_00205at 220.689 kb on - strand, within CCNA_00205at 220.713 kb on + strand, within CCNA_00205at 220.713 kb on + strand, within CCNA_00205at 220.760 kb on + strand, within CCNA_00205at 220.763 kb on - strand, within CCNA_00205at 220.768 kb on - strandat 220.777 kb on + strandat 220.777 kb on + strandat 220.787 kb on + strandat 220.806 kb on + strandat 220.806 kb on + strandat 220.814 kb on - strandat 220.814 kb on - strandat 220.819 kb on + strandat 220.903 kb on - strand, within CCNA_03916at 220.927 kb on + strand, within CCNA_03916at 220.935 kb on - strandat 220.935 kb on - strandat 220.958 kb on + strandat 220.958 kb on + strandat 221.018 kb on - strandat 221.035 kb on - strandat 221.043 kb on - strandat 221.059 kb on + strandat 221.074 kb on + strandat 221.202 kb on - strand, within CCNA_00206at 221.202 kb on - strand, within CCNA_00206at 221.277 kb on + strand, within CCNA_00206at 221.300 kb on + strand, within CCNA_00206at 221.327 kb on + strand, within CCNA_00206at 221.331 kb on - strand, within CCNA_00206at 221.353 kb on + strand, within CCNA_00206at 221.387 kb on - strand, within CCNA_00206at 221.409 kb on - strand, within CCNA_00206at 221.436 kb on + strand, within CCNA_00206at 221.480 kb on + strand, within CCNA_00206at 221.558 kb on - strand, within CCNA_00206at 221.575 kb on + strandat 221.575 kb on + strandat 221.575 kb on + strandat 221.644 kb on + strandat 221.683 kb on - strandat 221.750 kb on - strand, within CCNA_00207at 221.754 kb on + strand, within CCNA_00207at 221.755 kb on - strand, within CCNA_00207at 221.841 kb on - strand, within CCNA_00207at 221.871 kb on + strandat 221.903 kb on + strand, within CCNA_00207at 221.913 kb on + strand, within CCNA_00207at 221.913 kb on + strand, within CCNA_00207at 221.966 kb on - strand, within CCNA_00207at 222.006 kb on + strand, within CCNA_00207at 222.012 kb on + strand, within CCNA_00207at 222.018 kb on + strand, within CCNA_00207at 222.021 kb on - strand, within CCNA_00207at 222.033 kb on - strand, within CCNA_00207at 222.065 kb on + strand, within CCNA_00207at 222.065 kb on + strand, within CCNA_00207at 222.070 kb on + strand, within CCNA_00207at 222.113 kb on + strand, within CCNA_00207at 222.142 kb on + strand, within CCNA_00207at 222.161 kb on + strand, within CCNA_00207at 222.207 kb on + strand, within CCNA_00207at 222.238 kb on - strandat 222.240 kb on + strandat 222.246 kb on + strandat 222.246 kb on + strandat 222.246 kb on + strandat 222.246 kb on + strandat 222.248 kb on - strandat 222.248 kb on - strandat 222.262 kb on + strandat 222.281 kb on + strandat 222.288 kb on + strandat 222.288 kb on + strandat 222.293 kb on + strandat 222.296 kb on + strandat 222.296 kb on - strandat 222.306 kb on + strandat 222.314 kb on - strandat 222.314 kb on - strandat 222.318 kb on + strandat 222.343 kb on + strandat 222.411 kb on - strand, within CCNA_00208at 222.411 kb on - strand, within CCNA_00208at 222.413 kb on + strand, within CCNA_00208at 222.483 kb on + strand, within CCNA_00208at 222.537 kb on - strand, within CCNA_00208at 222.537 kb on - strand, within CCNA_00208at 222.573 kb on + strand, within CCNA_00208at 222.641 kb on + strandat 222.654 kb on - strand, within CCNA_00208at 222.666 kb on + strand, within CCNA_00208at 222.673 kb on + strand, within CCNA_00208at 222.701 kb on + strand, within CCNA_00208at 222.715 kb on - strand, within CCNA_00208at 222.737 kb on - strand, within CCNA_00208at 222.739 kb on + strand, within CCNA_00208at 222.753 kb on - strand, within CCNA_00208at 222.759 kb on + strand, within CCNA_00208at 222.769 kb on + strand, within CCNA_00208at 222.769 kb on + strand, within CCNA_00208at 222.774 kb on + strand, within CCNA_00208at 222.782 kb on - strand, within CCNA_00208at 222.791 kb on + strand, within CCNA_00208at 222.791 kb on + strand, within CCNA_00208at 222.791 kb on + strand, within CCNA_00208at 222.791 kb on + strand, within CCNA_00208at 222.791 kb on + strand, within CCNA_00208at 222.799 kb on - strand, within CCNA_00208at 222.799 kb on - strand, within CCNA_00208at 222.799 kb on - strand, within CCNA_00208at 222.843 kb on - strand, within CCNA_00208at 222.844 kb on + strand, within CCNA_00208at 222.844 kb on + strand, within CCNA_00208at 222.852 kb on - strand, within CCNA_00208at 222.852 kb on - strand, within CCNA_00208at 222.852 kb on - strand, within CCNA_00208at 222.852 kb on - strand, within CCNA_00208at 222.852 kb on - strand, within CCNA_00208at 222.852 kb on - strand, within CCNA_00208at 222.856 kb on + strand, within CCNA_00208at 222.857 kb on - strand, within CCNA_00208at 222.893 kb on + strand, within CCNA_00208at 222.893 kb on + strand, within CCNA_00208at 222.896 kb on - strand, within CCNA_00208at 222.896 kb on - strand, within CCNA_00208at 222.898 kb on + strand, within CCNA_00208at 222.901 kb on - strand, within CCNA_00208at 222.901 kb on - strand, within CCNA_00208at 222.922 kb on + strand, within CCNA_00208at 222.922 kb on + strand, within CCNA_00208at 222.922 kb on + strand, within CCNA_00208at 222.922 kb on + strand, within CCNA_00208at 222.930 kb on - strand, within CCNA_00208at 222.930 kb on - strand, within CCNA_00208at 222.930 kb on - strand, within CCNA_00208at 222.930 kb on - strand, within CCNA_00208at 222.956 kb on + strand, within CCNA_00208at 222.981 kb on + strand, within CCNA_00208at 222.981 kb on + strand, within CCNA_00208at 222.981 kb on + strand, within CCNA_00208at 222.989 kb on - strand, within CCNA_00208at 222.989 kb on - strand, within CCNA_00208at 222.989 kb on - strand, within CCNA_00208at 223.003 kb on + strand, within CCNA_00208at 223.011 kb on - strand, within CCNA_00208at 223.025 kb on - strand, within CCNA_00208at 223.030 kb on + strand, within CCNA_00208at 223.030 kb on + strand, within CCNA_00208at 223.030 kb on + strand, within CCNA_00208at 223.030 kb on + strand, within CCNA_00208at 223.030 kb on + strand, within CCNA_00208at 223.030 kb on + strand, within CCNA_00208at 223.035 kb on + strand, within CCNA_00208at 223.035 kb on + strand, within CCNA_00208at 223.038 kb on - strand, within CCNA_00208at 223.061 kb on + strand, within CCNA_00208at 223.061 kb on + strand, within CCNA_00208at 223.061 kb on + strand, within CCNA_00208at 223.061 kb on + strand, within CCNA_00208at 223.061 kb on + strand, within CCNA_00208at 223.061 kb on + strand, within CCNA_00208at 223.061 kb on + strand, within CCNA_00208at 223.069 kb on - strand, within CCNA_00208at 223.069 kb on - strand, within CCNA_00208at 223.069 kb on - strand, within CCNA_00208at 223.089 kb on - strand, within CCNA_00208at 223.127 kb on + strand, within CCNA_00208at 223.135 kb on - strand, within CCNA_00208at 223.164 kb on + strand, within CCNA_00208at 223.172 kb on - strand, within CCNA_00208at 223.201 kb on - strandat 223.206 kb on - strandat 223.207 kb on - strandat 223.251 kb on + strandat 223.270 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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220,688 - CCNA_00205 0.77 +1.7
220,689 - CCNA_00205 0.77 -0.8
220,713 + CCNA_00205 0.81 +0.5
220,713 + CCNA_00205 0.81 +1.2
220,760 + CCNA_00205 0.89 +1.2
220,763 - CCNA_00205 0.90 -1.0
220,768 - +2.1
220,777 + +0.5
220,777 + +0.1
220,787 + +1.4
220,806 + -1.7
220,806 + +0.7
220,814 - -0.7
220,814 - -0.2
220,819 + -1.4
220,903 - CCNA_03916 0.31 +0.7
220,927 + CCNA_03916 0.40 +1.5
220,935 - -0.5
220,935 - -0.7
220,958 + -0.3
220,958 + +0.2
221,018 - -0.3
221,035 - -1.0
221,043 - +0.4
221,059 + +1.6
221,074 + +2.2
221,202 - CCNA_00206 0.38 +0.5
221,202 - CCNA_00206 0.38 -0.2
221,277 + CCNA_00206 0.49 +1.0
221,300 + CCNA_00206 0.52 +0.4
221,327 + CCNA_00206 0.56 +1.7
221,331 - CCNA_00206 0.56 -0.8
221,353 + CCNA_00206 0.59 +1.3
221,387 - CCNA_00206 0.64 -0.0
221,409 - CCNA_00206 0.67 +1.2
221,436 + CCNA_00206 0.71 +0.9
221,480 + CCNA_00206 0.77 +1.6
221,558 - CCNA_00206 0.88 +2.0
221,575 + +0.7
221,575 + +2.0
221,575 + +1.3
221,644 + +2.7
221,683 - +0.1
221,750 - CCNA_00207 0.17 -0.6
221,754 + CCNA_00207 0.18 +3.0
221,755 - CCNA_00207 0.18 +0.1
221,841 - CCNA_00207 0.31 +1.0
221,871 + +3.6
221,903 + CCNA_00207 0.41 +2.2
221,913 + CCNA_00207 0.42 +1.3
221,913 + CCNA_00207 0.42 +1.3
221,966 - CCNA_00207 0.51 -0.4
222,006 + CCNA_00207 0.57 +0.7
222,012 + CCNA_00207 0.58 +2.1
222,018 + CCNA_00207 0.59 +2.0
222,021 - CCNA_00207 0.59 +1.4
222,033 - CCNA_00207 0.61 +1.4
222,065 + CCNA_00207 0.66 +2.1
222,065 + CCNA_00207 0.66 +3.2
222,070 + CCNA_00207 0.67 +1.8
222,113 + CCNA_00207 0.74 +2.2
222,142 + CCNA_00207 0.78 +2.1
222,161 + CCNA_00207 0.81 +2.5
222,207 + CCNA_00207 0.88 +2.1
222,238 - +2.4
222,240 + +1.9
222,246 + +2.1
222,246 + +3.0
222,246 + +2.8
222,246 + +2.0
222,248 - +0.4
222,248 - +0.6
222,262 + +3.1
222,281 + +2.5
222,288 + +2.4
222,288 + +3.1
222,293 + +2.4
222,296 + +3.2
222,296 - +0.8
222,306 + +2.7
222,314 - -0.5
222,314 - +1.6
222,318 + +2.0
222,343 + +2.0
222,411 - CCNA_00208 0.13 -0.3
222,411 - CCNA_00208 0.13 +0.6
222,413 + CCNA_00208 0.13 +0.8
222,483 + CCNA_00208 0.20 -1.2
222,537 - CCNA_00208 0.26 -1.7
222,537 - CCNA_00208 0.26 +0.2
222,573 + CCNA_00208 0.29 +1.5
222,641 + +4.0
222,654 - CCNA_00208 0.37 -1.1
222,666 + CCNA_00208 0.39 -0.0
222,673 + CCNA_00208 0.39 -1.1
222,701 + CCNA_00208 0.42 +1.2
222,715 - CCNA_00208 0.44 -1.1
222,737 - CCNA_00208 0.46 -0.9
222,739 + CCNA_00208 0.46 +1.4
222,753 - CCNA_00208 0.47 +0.6
222,759 + CCNA_00208 0.48 +1.5
222,769 + CCNA_00208 0.49 +0.2
222,769 + CCNA_00208 0.49 -1.5
222,774 + CCNA_00208 0.50 -0.8
222,782 - CCNA_00208 0.50 -0.6
222,791 + CCNA_00208 0.51 +2.5
222,791 + CCNA_00208 0.51 +1.7
222,791 + CCNA_00208 0.51 +1.6
222,791 + CCNA_00208 0.51 +1.8
222,791 + CCNA_00208 0.51 +1.3
222,799 - CCNA_00208 0.52 -1.2
222,799 - CCNA_00208 0.52 -0.9
222,799 - CCNA_00208 0.52 -2.1
222,843 - CCNA_00208 0.57 -1.9
222,844 + CCNA_00208 0.57 +0.8
222,844 + CCNA_00208 0.57 -0.3
222,852 - CCNA_00208 0.57 -1.2
222,852 - CCNA_00208 0.57 +2.7
222,852 - CCNA_00208 0.57 -0.9
222,852 - CCNA_00208 0.57 +1.6
222,852 - CCNA_00208 0.57 -0.6
222,852 - CCNA_00208 0.57 -1.8
222,856 + CCNA_00208 0.58 -1.9
222,857 - CCNA_00208 0.58 -0.8
222,893 + CCNA_00208 0.62 -0.3
222,893 + CCNA_00208 0.62 +2.4
222,896 - CCNA_00208 0.62 -0.5
222,896 - CCNA_00208 0.62 -0.9
222,898 + CCNA_00208 0.62 +1.6
222,901 - CCNA_00208 0.62 -0.3
222,901 - CCNA_00208 0.62 -1.0
222,922 + CCNA_00208 0.65 +0.6
222,922 + CCNA_00208 0.65 +2.0
222,922 + CCNA_00208 0.65 +0.5
222,922 + CCNA_00208 0.65 +0.4
222,930 - CCNA_00208 0.65 -0.1
222,930 - CCNA_00208 0.65 -1.1
222,930 - CCNA_00208 0.65 -3.2
222,930 - CCNA_00208 0.65 +1.2
222,956 + CCNA_00208 0.68 +1.0
222,981 + CCNA_00208 0.71 -2.1
222,981 + CCNA_00208 0.71 -1.9
222,981 + CCNA_00208 0.71 -0.7
222,989 - CCNA_00208 0.71 +0.5
222,989 - CCNA_00208 0.71 +0.3
222,989 - CCNA_00208 0.71 -0.7
223,003 + CCNA_00208 0.73 -1.2
223,011 - CCNA_00208 0.74 -0.6
223,025 - CCNA_00208 0.75 +1.0
223,030 + CCNA_00208 0.75 +0.8
223,030 + CCNA_00208 0.75 +1.4
223,030 + CCNA_00208 0.75 +0.4
223,030 + CCNA_00208 0.75 +2.0
223,030 + CCNA_00208 0.75 +0.8
223,030 + CCNA_00208 0.75 -0.1
223,035 + CCNA_00208 0.76 +1.0
223,035 + CCNA_00208 0.76 +0.4
223,038 - CCNA_00208 0.76 +0.2
223,061 + CCNA_00208 0.79 -0.2
223,061 + CCNA_00208 0.79 -1.3
223,061 + CCNA_00208 0.79 +0.1
223,061 + CCNA_00208 0.79 -0.8
223,061 + CCNA_00208 0.79 +1.5
223,061 + CCNA_00208 0.79 -0.5
223,061 + CCNA_00208 0.79 +0.9
223,069 - CCNA_00208 0.79 -0.9
223,069 - CCNA_00208 0.79 -0.8
223,069 - CCNA_00208 0.79 -0.9
223,089 - CCNA_00208 0.81 -2.9
223,127 + CCNA_00208 0.85 -1.0
223,135 - CCNA_00208 0.86 -0.8
223,164 + CCNA_00208 0.89 +2.4
223,172 - CCNA_00208 0.90 -1.8
223,201 - +0.4
223,206 - +0.9
223,207 - -1.4
223,251 + -0.1
223,270 + -0.5

Or see this region's nucleotide sequence