Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00200

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00199 and CCNA_00200 are separated by 52 nucleotidesCCNA_00200 and CCNA_00201 are separated by 162 nucleotidesCCNA_00201 and CCNA_00202 are separated by 116 nucleotides CCNA_00199: CCNA_00199 - TadG/vWA-family protein, at 212,387 to 214,267 _00199 CCNA_00200: CCNA_00200 - 2OG-Fe(II) oxygenase superfamily protein, at 214,320 to 215,255 _00200 CCNA_00201: CCNA_00201 - outer membrane protein, at 215,418 to 216,098 _00201 CCNA_00202: CCNA_00202 - DesA-family fatty acid desaturase, at 216,215 to 217,270 _00202 Position (kb) 214 215 216Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 213.377 kb on + strand, within CCNA_00199at 213.399 kb on + strand, within CCNA_00199at 213.404 kb on + strand, within CCNA_00199at 213.404 kb on + strand, within CCNA_00199at 213.404 kb on + strand, within CCNA_00199at 213.407 kb on - strand, within CCNA_00199at 213.407 kb on - strand, within CCNA_00199at 213.435 kb on - strand, within CCNA_00199at 213.438 kb on + strand, within CCNA_00199at 213.441 kb on - strand, within CCNA_00199at 213.441 kb on - strand, within CCNA_00199at 213.474 kb on + strand, within CCNA_00199at 213.479 kb on + strand, within CCNA_00199at 213.489 kb on + strand, within CCNA_00199at 213.494 kb on + strand, within CCNA_00199at 213.494 kb on + strand, within CCNA_00199at 213.494 kb on + strand, within CCNA_00199at 213.502 kb on - strand, within CCNA_00199at 213.502 kb on - strand, within CCNA_00199at 213.502 kb on - strand, within CCNA_00199at 213.527 kb on + strand, within CCNA_00199at 213.527 kb on - strand, within CCNA_00199at 213.536 kb on + strand, within CCNA_00199at 213.544 kb on - strand, within CCNA_00199at 213.556 kb on + strand, within CCNA_00199at 213.559 kb on + strand, within CCNA_00199at 213.565 kb on - strand, within CCNA_00199at 213.569 kb on - strand, within CCNA_00199at 213.586 kb on + strand, within CCNA_00199at 213.611 kb on + strand, within CCNA_00199at 213.631 kb on + strand, within CCNA_00199at 213.631 kb on + strand, within CCNA_00199at 213.631 kb on + strand, within CCNA_00199at 213.631 kb on + strand, within CCNA_00199at 213.631 kb on + strand, within CCNA_00199at 213.632 kb on + strand, within CCNA_00199at 213.639 kb on - strand, within CCNA_00199at 213.639 kb on - strand, within CCNA_00199at 213.663 kb on + strand, within CCNA_00199at 213.684 kb on - strand, within CCNA_00199at 213.689 kb on + strand, within CCNA_00199at 213.697 kb on - strand, within CCNA_00199at 213.699 kb on + strand, within CCNA_00199at 213.711 kb on + strand, within CCNA_00199at 213.733 kb on + strand, within CCNA_00199at 213.733 kb on + strand, within CCNA_00199at 213.741 kb on - strand, within CCNA_00199at 213.741 kb on - strand, within CCNA_00199at 213.741 kb on - strand, within CCNA_00199at 213.742 kb on + strand, within CCNA_00199at 213.761 kb on + strand, within CCNA_00199at 213.766 kb on + strand, within CCNA_00199at 213.774 kb on - strand, within CCNA_00199at 213.808 kb on - strand, within CCNA_00199at 213.815 kb on + strand, within CCNA_00199at 213.823 kb on - strand, within CCNA_00199at 213.826 kb on + strand, within CCNA_00199at 213.826 kb on + strand, within CCNA_00199at 213.867 kb on - strand, within CCNA_00199at 213.894 kb on + strand, within CCNA_00199at 213.919 kb on - strand, within CCNA_00199at 213.940 kb on + strand, within CCNA_00199at 213.968 kb on + strand, within CCNA_00199at 213.994 kb on + strand, within CCNA_00199at 214.020 kb on - strandat 214.028 kb on + strand, within CCNA_00199at 214.036 kb on - strand, within CCNA_00199at 214.049 kb on - strand, within CCNA_00199at 214.058 kb on + strand, within CCNA_00199at 214.066 kb on - strand, within CCNA_00199at 214.071 kb on + strand, within CCNA_00199at 214.090 kb on + strandat 214.092 kb on + strandat 214.099 kb on + strandat 214.107 kb on - strandat 214.108 kb on - strandat 214.129 kb on - strandat 214.137 kb on - strandat 214.183 kb on - strandat 214.227 kb on + strandat 214.228 kb on - strandat 214.228 kb on - strandat 214.230 kb on + strandat 214.232 kb on + strandat 214.242 kb on + strandat 214.250 kb on - strandat 214.291 kb on + strandat 214.293 kb on - strandat 214.299 kb on - strandat 214.326 kb on - strandat 214.381 kb on + strandat 214.387 kb on - strandat 214.413 kb on + strandat 214.413 kb on + strandat 214.413 kb on + strandat 214.413 kb on + strandat 214.413 kb on + strandat 214.421 kb on - strand, within CCNA_00200at 214.421 kb on - strand, within CCNA_00200at 214.423 kb on + strand, within CCNA_00200at 214.463 kb on + strand, within CCNA_00200at 214.468 kb on + strand, within CCNA_00200at 214.471 kb on - strand, within CCNA_00200at 214.512 kb on + strand, within CCNA_00200at 214.515 kb on + strand, within CCNA_00200at 214.515 kb on + strand, within CCNA_00200at 214.523 kb on - strand, within CCNA_00200at 214.523 kb on - strand, within CCNA_00200at 214.527 kb on + strand, within CCNA_00200at 214.528 kb on - strand, within CCNA_00200at 214.530 kb on - strand, within CCNA_00200at 214.530 kb on - strand, within CCNA_00200at 214.530 kb on - strand, within CCNA_00200at 214.530 kb on - strand, within CCNA_00200at 214.530 kb on - strand, within CCNA_00200at 214.559 kb on - strand, within CCNA_00200at 214.616 kb on - strand, within CCNA_00200at 214.623 kb on + strand, within CCNA_00200at 214.626 kb on - strand, within CCNA_00200at 214.639 kb on - strand, within CCNA_00200at 214.641 kb on + strand, within CCNA_00200at 214.646 kb on + strand, within CCNA_00200at 214.672 kb on + strand, within CCNA_00200at 214.672 kb on + strand, within CCNA_00200at 214.680 kb on - strand, within CCNA_00200at 214.734 kb on + strand, within CCNA_00200at 214.748 kb on + strand, within CCNA_00200at 214.751 kb on - strand, within CCNA_00200at 214.796 kb on + strand, within CCNA_00200at 214.802 kb on + strand, within CCNA_00200at 214.804 kb on - strand, within CCNA_00200at 214.824 kb on - strand, within CCNA_00200at 214.851 kb on + strand, within CCNA_00200at 214.851 kb on + strand, within CCNA_00200at 214.851 kb on + strand, within CCNA_00200at 214.859 kb on - strand, within CCNA_00200at 214.859 kb on - strand, within CCNA_00200at 214.869 kb on - strand, within CCNA_00200at 214.905 kb on - strand, within CCNA_00200at 214.963 kb on - strand, within CCNA_00200at 214.988 kb on - strand, within CCNA_00200at 215.018 kb on + strand, within CCNA_00200at 215.020 kb on + strand, within CCNA_00200at 215.037 kb on + strand, within CCNA_00200at 215.046 kb on - strand, within CCNA_00200at 215.055 kb on + strand, within CCNA_00200at 215.065 kb on + strand, within CCNA_00200at 215.100 kb on + strandat 215.100 kb on + strand, within CCNA_00200at 215.165 kb on - strandat 215.172 kb on - strandat 215.194 kb on - strandat 215.205 kb on + strandat 215.272 kb on - strandat 215.303 kb on - strandat 215.376 kb on - strandat 215.382 kb on + strandat 215.409 kb on + strandat 215.454 kb on + strandat 215.454 kb on + strandat 215.459 kb on + strandat 215.462 kb on - strandat 215.473 kb on - strandat 215.499 kb on - strand, within CCNA_00201at 215.501 kb on + strand, within CCNA_00201at 215.559 kb on - strand, within CCNA_00201at 215.559 kb on - strand, within CCNA_00201at 215.563 kb on + strand, within CCNA_00201at 215.563 kb on + strandat 215.568 kb on + strand, within CCNA_00201at 215.568 kb on + strand, within CCNA_00201at 215.568 kb on + strand, within CCNA_00201at 215.568 kb on + strand, within CCNA_00201at 215.568 kb on + strand, within CCNA_00201at 215.568 kb on + strand, within CCNA_00201at 215.568 kb on + strand, within CCNA_00201at 215.571 kb on - strand, within CCNA_00201at 215.576 kb on - strand, within CCNA_00201at 215.576 kb on - strand, within CCNA_00201at 215.576 kb on - strand, within CCNA_00201at 215.576 kb on - strand, within CCNA_00201at 215.576 kb on - strand, within CCNA_00201at 215.576 kb on - strand, within CCNA_00201at 215.576 kb on - strand, within CCNA_00201at 215.576 kb on - strand, within CCNA_00201at 215.576 kb on - strand, within CCNA_00201at 215.576 kb on - strand, within CCNA_00201at 215.581 kb on - strand, within CCNA_00201at 215.590 kb on - strand, within CCNA_00201at 215.595 kb on - strand, within CCNA_00201at 215.624 kb on + strand, within CCNA_00201at 215.624 kb on + strand, within CCNA_00201at 215.656 kb on - strand, within CCNA_00201at 215.704 kb on + strand, within CCNA_00201at 215.712 kb on - strand, within CCNA_00201at 215.713 kb on + strand, within CCNA_00201at 215.721 kb on - strand, within CCNA_00201at 215.721 kb on - strand, within CCNA_00201at 215.756 kb on + strand, within CCNA_00201at 215.769 kb on + strand, within CCNA_00201at 215.769 kb on + strand, within CCNA_00201at 215.838 kb on - strand, within CCNA_00201at 215.859 kb on - strand, within CCNA_00201at 215.877 kb on + strand, within CCNA_00201at 215.889 kb on + strand, within CCNA_00201at 215.899 kb on + strand, within CCNA_00201at 215.907 kb on - strand, within CCNA_00201at 215.920 kb on - strand, within CCNA_00201at 215.944 kb on - strand, within CCNA_00201at 216.012 kb on - strand, within CCNA_00201at 216.049 kb on + strandat 216.054 kb on + strandat 216.081 kb on - strandat 216.087 kb on + strandat 216.095 kb on - strandat 216.101 kb on + strandat 216.135 kb on + strandat 216.135 kb on + strandat 216.135 kb on - strandat 216.141 kb on - strandat 216.143 kb on - strandat 216.187 kb on + strandat 216.195 kb on - strandat 216.195 kb on - strandat 216.197 kb on - strandat 216.197 kb on - strandat 216.197 kb on - strandat 216.253 kb on + strandat 216.254 kb on + strandat 216.255 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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213,377 + CCNA_00199 0.53 -1.4
213,399 + CCNA_00199 0.54 +0.1
213,404 + CCNA_00199 0.54 +1.2
213,404 + CCNA_00199 0.54 -0.0
213,404 + CCNA_00199 0.54 -0.4
213,407 - CCNA_00199 0.54 -0.9
213,407 - CCNA_00199 0.54 +1.9
213,435 - CCNA_00199 0.56 -2.0
213,438 + CCNA_00199 0.56 -0.0
213,441 - CCNA_00199 0.56 -1.8
213,441 - CCNA_00199 0.56 +0.2
213,474 + CCNA_00199 0.58 -0.3
213,479 + CCNA_00199 0.58 +1.2
213,489 + CCNA_00199 0.59 -0.1
213,494 + CCNA_00199 0.59 +0.3
213,494 + CCNA_00199 0.59 +0.4
213,494 + CCNA_00199 0.59 -0.0
213,502 - CCNA_00199 0.59 -1.7
213,502 - CCNA_00199 0.59 +0.1
213,502 - CCNA_00199 0.59 -0.0
213,527 + CCNA_00199 0.61 +0.2
213,527 - CCNA_00199 0.61 -1.2
213,536 + CCNA_00199 0.61 +1.5
213,544 - CCNA_00199 0.62 -1.3
213,556 + CCNA_00199 0.62 +1.2
213,559 + CCNA_00199 0.62 +4.3
213,565 - CCNA_00199 0.63 -1.3
213,569 - CCNA_00199 0.63 +1.9
213,586 + CCNA_00199 0.64 -1.2
213,611 + CCNA_00199 0.65 +2.1
213,631 + CCNA_00199 0.66 -1.1
213,631 + CCNA_00199 0.66 +0.1
213,631 + CCNA_00199 0.66 -0.3
213,631 + CCNA_00199 0.66 +0.8
213,631 + CCNA_00199 0.66 +0.5
213,632 + CCNA_00199 0.66 +0.6
213,639 - CCNA_00199 0.67 +0.2
213,639 - CCNA_00199 0.67 +1.5
213,663 + CCNA_00199 0.68 +3.0
213,684 - CCNA_00199 0.69 +0.6
213,689 + CCNA_00199 0.69 -1.4
213,697 - CCNA_00199 0.70 -0.6
213,699 + CCNA_00199 0.70 +0.7
213,711 + CCNA_00199 0.70 -0.7
213,733 + CCNA_00199 0.72 +0.4
213,733 + CCNA_00199 0.72 +0.4
213,741 - CCNA_00199 0.72 +0.9
213,741 - CCNA_00199 0.72 +1.4
213,741 - CCNA_00199 0.72 +0.4
213,742 + CCNA_00199 0.72 +1.9
213,761 + CCNA_00199 0.73 -0.3
213,766 + CCNA_00199 0.73 +1.5
213,774 - CCNA_00199 0.74 +1.2
213,808 - CCNA_00199 0.76 +1.0
213,815 + CCNA_00199 0.76 -1.8
213,823 - CCNA_00199 0.76 -0.8
213,826 + CCNA_00199 0.77 +1.8
213,826 + CCNA_00199 0.77 -0.5
213,867 - CCNA_00199 0.79 -0.7
213,894 + CCNA_00199 0.80 +2.2
213,919 - CCNA_00199 0.81 +0.9
213,940 + CCNA_00199 0.83 +1.1
213,968 + CCNA_00199 0.84 +0.2
213,994 + CCNA_00199 0.85 +0.0
214,020 - +1.7
214,028 + CCNA_00199 0.87 -1.2
214,036 - CCNA_00199 0.88 -0.1
214,049 - CCNA_00199 0.88 -0.9
214,058 + CCNA_00199 0.89 -0.1
214,066 - CCNA_00199 0.89 +1.0
214,071 + CCNA_00199 0.90 +0.2
214,090 + +0.4
214,092 + +0.0
214,099 + -0.2
214,107 - +0.2
214,108 - +0.6
214,129 - -1.1
214,137 - -1.0
214,183 - -0.3
214,227 + +0.8
214,228 - -0.5
214,228 - +2.0
214,230 + +0.9
214,232 + +0.7
214,242 + +1.5
214,250 - -1.9
214,291 + -1.7
214,293 - +3.4
214,299 - +4.0
214,326 - +2.9
214,381 + -0.0
214,387 - +1.6
214,413 + +0.8
214,413 + -1.0
214,413 + -1.1
214,413 + -0.2
214,413 + -1.1
214,421 - CCNA_00200 0.11 +2.4
214,421 - CCNA_00200 0.11 +2.1
214,423 + CCNA_00200 0.11 -2.7
214,463 + CCNA_00200 0.15 +0.7
214,468 + CCNA_00200 0.16 -0.1
214,471 - CCNA_00200 0.16 +2.5
214,512 + CCNA_00200 0.21 +0.2
214,515 + CCNA_00200 0.21 -1.0
214,515 + CCNA_00200 0.21 -0.3
214,523 - CCNA_00200 0.22 +2.4
214,523 - CCNA_00200 0.22 +2.1
214,527 + CCNA_00200 0.22 -0.0
214,528 - CCNA_00200 0.22 +1.2
214,530 - CCNA_00200 0.22 +2.0
214,530 - CCNA_00200 0.22 +1.3
214,530 - CCNA_00200 0.22 +1.3
214,530 - CCNA_00200 0.22 +2.1
214,530 - CCNA_00200 0.22 +1.6
214,559 - CCNA_00200 0.26 +1.9
214,616 - CCNA_00200 0.32 +1.0
214,623 + CCNA_00200 0.32 -0.5
214,626 - CCNA_00200 0.33 +2.2
214,639 - CCNA_00200 0.34 -0.1
214,641 + CCNA_00200 0.34 -0.6
214,646 + CCNA_00200 0.35 -2.7
214,672 + CCNA_00200 0.38 +0.1
214,672 + CCNA_00200 0.38 -0.9
214,680 - CCNA_00200 0.38 +2.1
214,734 + CCNA_00200 0.44 +1.4
214,748 + CCNA_00200 0.46 -0.3
214,751 - CCNA_00200 0.46 +1.1
214,796 + CCNA_00200 0.51 +1.0
214,802 + CCNA_00200 0.51 -0.9
214,804 - CCNA_00200 0.52 +0.3
214,824 - CCNA_00200 0.54 +1.9
214,851 + CCNA_00200 0.57 -0.6
214,851 + CCNA_00200 0.57 -2.2
214,851 + CCNA_00200 0.57 -1.4
214,859 - CCNA_00200 0.58 +0.2
214,859 - CCNA_00200 0.58 +2.9
214,869 - CCNA_00200 0.59 -0.1
214,905 - CCNA_00200 0.62 +1.7
214,963 - CCNA_00200 0.69 +1.0
214,988 - CCNA_00200 0.71 +0.7
215,018 + CCNA_00200 0.75 -1.8
215,020 + CCNA_00200 0.75 -1.0
215,037 + CCNA_00200 0.77 +0.0
215,046 - CCNA_00200 0.78 -0.1
215,055 + CCNA_00200 0.79 +2.0
215,065 + CCNA_00200 0.80 -0.7
215,100 + +3.0
215,100 + CCNA_00200 0.83 -0.7
215,165 - +0.6
215,172 - +0.3
215,194 - -1.1
215,205 + +1.4
215,272 - -0.3
215,303 - +1.8
215,376 - -0.4
215,382 + -0.7
215,409 + +1.0
215,454 + -1.4
215,454 + +1.4
215,459 + -0.3
215,462 - -0.9
215,473 - +1.1
215,499 - CCNA_00201 0.12 +0.2
215,501 + CCNA_00201 0.12 -0.3
215,559 - CCNA_00201 0.21 -2.9
215,559 - CCNA_00201 0.21 -0.7
215,563 + CCNA_00201 0.21 -2.1
215,563 + +2.4
215,568 + CCNA_00201 0.22 +0.6
215,568 + CCNA_00201 0.22 -0.4
215,568 + CCNA_00201 0.22 +0.4
215,568 + CCNA_00201 0.22 +0.1
215,568 + CCNA_00201 0.22 -1.5
215,568 + CCNA_00201 0.22 +0.1
215,568 + CCNA_00201 0.22 -0.0
215,571 - CCNA_00201 0.22 +1.8
215,576 - CCNA_00201 0.23 +1.0
215,576 - CCNA_00201 0.23 +1.1
215,576 - CCNA_00201 0.23 -1.8
215,576 - CCNA_00201 0.23 +1.2
215,576 - CCNA_00201 0.23 -3.2
215,576 - CCNA_00201 0.23 -0.5
215,576 - CCNA_00201 0.23 -2.3
215,576 - CCNA_00201 0.23 +0.7
215,576 - CCNA_00201 0.23 +2.4
215,576 - CCNA_00201 0.23 +0.3
215,581 - CCNA_00201 0.24 -0.2
215,590 - CCNA_00201 0.25 -0.4
215,595 - CCNA_00201 0.26 +0.1
215,624 + CCNA_00201 0.30 -2.1
215,624 + CCNA_00201 0.30 +0.5
215,656 - CCNA_00201 0.35 -2.5
215,704 + CCNA_00201 0.42 -0.2
215,712 - CCNA_00201 0.43 -1.3
215,713 + CCNA_00201 0.43 +0.2
215,721 - CCNA_00201 0.44 -1.7
215,721 - CCNA_00201 0.44 -1.1
215,756 + CCNA_00201 0.50 -1.9
215,769 + CCNA_00201 0.52 -0.6
215,769 + CCNA_00201 0.52 +0.5
215,838 - CCNA_00201 0.62 -0.9
215,859 - CCNA_00201 0.65 +0.7
215,877 + CCNA_00201 0.67 -1.1
215,889 + CCNA_00201 0.69 +0.4
215,899 + CCNA_00201 0.71 +0.5
215,907 - CCNA_00201 0.72 -0.5
215,920 - CCNA_00201 0.74 -0.3
215,944 - CCNA_00201 0.77 +0.2
216,012 - CCNA_00201 0.87 -0.6
216,049 + +0.9
216,054 + +1.3
216,081 - -0.0
216,087 + +1.6
216,095 - +0.2
216,101 + +0.3
216,135 + -0.5
216,135 + -0.9
216,135 - -0.0
216,141 - +1.6
216,143 - +2.7
216,187 + +0.7
216,195 - -0.7
216,195 - +0.8
216,197 - -0.9
216,197 - -0.5
216,197 - +0.3
216,253 + -0.9
216,254 + -1.0
216,255 + -1.4

Or see this region's nucleotide sequence