Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00176

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00174 and CCNA_00175 are separated by 11 nucleotidesCCNA_00175 and CCNA_00176 overlap by 86 nucleotidesCCNA_00176 and CCNA_00177 overlap by 32 nucleotidesCCNA_00177 and CCNA_00178 overlap by 4 nucleotidesCCNA_00178 and CCNA_00179 overlap by 4 nucleotides CCNA_00174: CCNA_00174 - type II secretion pathway protein F, at 189,809 to 191,020 _00174 CCNA_00175: CCNA_00175 - type II secretion pathway protein G, at 191,032 to 191,484 _00175 CCNA_00176: CCNA_00176 - type II secretion pathway protein H, at 191,399 to 191,956 _00176 CCNA_00177: CCNA_00177 - type II secretion pathway protein I, at 191,925 to 192,308 _00177 CCNA_00178: CCNA_00178 - type II secretion pathway protein J, at 192,305 to 192,895 _00178 CCNA_00179: CCNA_00179 - type II secretion pathway protein K, at 192,892 to 193,866 _00179 Position (kb) 191 192Strain fitness (log2 ratio) -2 -1 0 1 2at 190.409 kb on + strand, within CCNA_00174at 190.417 kb on - strand, within CCNA_00174at 190.424 kb on + strand, within CCNA_00174at 190.432 kb on - strand, within CCNA_00174at 190.450 kb on + strand, within CCNA_00174at 190.457 kb on + strand, within CCNA_00174at 190.505 kb on + strand, within CCNA_00174at 190.540 kb on + strand, within CCNA_00174at 190.603 kb on + strand, within CCNA_00174at 190.624 kb on - strand, within CCNA_00174at 190.624 kb on - strand, within CCNA_00174at 190.631 kb on - strand, within CCNA_00174at 190.661 kb on + strand, within CCNA_00174at 190.661 kb on + strand, within CCNA_00174at 190.669 kb on - strand, within CCNA_00174at 190.678 kb on - strand, within CCNA_00174at 190.684 kb on - strand, within CCNA_00174at 190.694 kb on + strand, within CCNA_00174at 190.696 kb on + strand, within CCNA_00174at 190.696 kb on + strand, within CCNA_00174at 190.696 kb on + strand, within CCNA_00174at 190.696 kb on + strand, within CCNA_00174at 190.696 kb on + strand, within CCNA_00174at 190.696 kb on + strand, within CCNA_00174at 190.704 kb on - strand, within CCNA_00174at 190.704 kb on - strand, within CCNA_00174at 190.708 kb on + strand, within CCNA_00174at 190.709 kb on - strand, within CCNA_00174at 190.709 kb on - strand, within CCNA_00174at 190.716 kb on - strand, within CCNA_00174at 190.716 kb on - strand, within CCNA_00174at 190.762 kb on + strand, within CCNA_00174at 190.762 kb on + strand, within CCNA_00174at 190.762 kb on + strand, within CCNA_00174at 190.837 kb on - strand, within CCNA_00174at 190.840 kb on + strand, within CCNA_00174at 190.848 kb on - strand, within CCNA_00174at 190.850 kb on + strand, within CCNA_00174at 190.858 kb on - strand, within CCNA_00174at 190.858 kb on - strand, within CCNA_00174at 190.915 kb on - strandat 190.915 kb on - strandat 191.009 kb on + strandat 191.022 kb on - strandat 191.037 kb on - strandat 191.081 kb on + strand, within CCNA_00175at 191.081 kb on + strand, within CCNA_00175at 191.089 kb on - strand, within CCNA_00175at 191.089 kb on - strand, within CCNA_00175at 191.096 kb on + strand, within CCNA_00175at 191.097 kb on + strand, within CCNA_00175at 191.099 kb on - strand, within CCNA_00175at 191.220 kb on - strand, within CCNA_00175at 191.229 kb on - strand, within CCNA_00175at 191.268 kb on + strand, within CCNA_00175at 191.300 kb on + strand, within CCNA_00175at 191.300 kb on + strand, within CCNA_00175at 191.307 kb on - strand, within CCNA_00175at 191.312 kb on - strand, within CCNA_00175at 191.312 kb on - strand, within CCNA_00175at 191.357 kb on - strand, within CCNA_00175at 191.357 kb on - strand, within CCNA_00175at 191.357 kb on - strand, within CCNA_00175at 191.357 kb on - strand, within CCNA_00175at 191.410 kb on - strandat 191.434 kb on - strandat 191.452 kb on + strandat 191.493 kb on - strand, within CCNA_00176at 191.493 kb on - strand, within CCNA_00176at 191.494 kb on + strand, within CCNA_00176at 191.502 kb on - strand, within CCNA_00176at 191.513 kb on + strand, within CCNA_00176at 191.518 kb on + strand, within CCNA_00176at 191.523 kb on + strand, within CCNA_00176at 191.523 kb on + strand, within CCNA_00176at 191.523 kb on + strand, within CCNA_00176at 191.531 kb on - strand, within CCNA_00176at 191.531 kb on - strand, within CCNA_00176at 191.531 kb on - strand, within CCNA_00176at 191.533 kb on + strand, within CCNA_00176at 191.539 kb on + strand, within CCNA_00176at 191.547 kb on - strand, within CCNA_00176at 191.572 kb on + strand, within CCNA_00176at 191.584 kb on + strand, within CCNA_00176at 191.585 kb on + strand, within CCNA_00176at 191.594 kb on - strand, within CCNA_00176at 191.594 kb on - strand, within CCNA_00176at 191.618 kb on + strand, within CCNA_00176at 191.672 kb on + strand, within CCNA_00176at 191.677 kb on + strand, within CCNA_00176at 191.703 kb on - strand, within CCNA_00176at 191.753 kb on + strand, within CCNA_00176at 191.761 kb on - strand, within CCNA_00176at 191.788 kb on + strand, within CCNA_00176at 191.796 kb on - strand, within CCNA_00176at 191.807 kb on - strand, within CCNA_00176at 191.843 kb on - strand, within CCNA_00176at 191.849 kb on + strand, within CCNA_00176at 191.857 kb on - strand, within CCNA_00176at 191.882 kb on - strand, within CCNA_00176at 191.919 kb on + strandat 191.962 kb on + strandat 192.018 kb on + strand, within CCNA_00177at 192.080 kb on + strand, within CCNA_00177at 192.138 kb on + strand, within CCNA_00177at 192.138 kb on + strand, within CCNA_00177at 192.146 kb on - strand, within CCNA_00177at 192.146 kb on - strand, within CCNA_00177at 192.146 kb on - strand, within CCNA_00177at 192.146 kb on - strand, within CCNA_00177at 192.184 kb on + strand, within CCNA_00177at 192.198 kb on + strand, within CCNA_00177at 192.251 kb on - strand, within CCNA_00177at 192.251 kb on - strand, within CCNA_00177at 192.290 kb on + strandat 192.290 kb on + strandat 192.290 kb on + strandat 192.290 kb on + strandat 192.290 kb on + strandat 192.290 kb on + strandat 192.298 kb on - strandat 192.298 kb on - strandat 192.298 kb on - strandat 192.310 kb on + strandat 192.312 kb on + strandat 192.320 kb on - strandat 192.341 kb on + strandat 192.349 kb on - strandat 192.366 kb on - strand, within CCNA_00178at 192.385 kb on - strand, within CCNA_00178at 192.395 kb on - strand, within CCNA_00178at 192.435 kb on + strand, within CCNA_00178at 192.486 kb on - strand, within CCNA_00178at 192.553 kb on - strand, within CCNA_00178at 192.579 kb on + strand, within CCNA_00178at 192.592 kb on - strand, within CCNA_00178at 192.622 kb on - strand, within CCNA_00178at 192.631 kb on + strandat 192.650 kb on - strand, within CCNA_00178at 192.652 kb on + strand, within CCNA_00178at 192.653 kb on + strand, within CCNA_00178at 192.653 kb on + strand, within CCNA_00178at 192.660 kb on - strand, within CCNA_00178at 192.661 kb on - strand, within CCNA_00178at 192.694 kb on - strand, within CCNA_00178at 192.696 kb on - strand, within CCNA_00178at 192.699 kb on - strand, within CCNA_00178at 192.699 kb on - strand, within CCNA_00178at 192.702 kb on + strand, within CCNA_00178at 192.729 kb on - strand, within CCNA_00178at 192.758 kb on - strand, within CCNA_00178at 192.769 kb on + strand, within CCNA_00178at 192.771 kb on - strand, within CCNA_00178at 192.776 kb on - strand, within CCNA_00178at 192.784 kb on - strand, within CCNA_00178at 192.818 kb on + strand, within CCNA_00178at 192.824 kb on + strand, within CCNA_00178at 192.832 kb on - strand, within CCNA_00178at 192.876 kb on + strandat 192.876 kb on + strandat 192.876 kb on - strandat 192.878 kb on - strandat 192.884 kb on - strandat 192.884 kb on - strandat 192.884 kb on - strandat 192.886 kb on + strandat 192.912 kb on - strandat 192.919 kb on + strandat 192.942 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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190,409 + CCNA_00174 0.50 -1.8
190,417 - CCNA_00174 0.50 -1.4
190,424 + CCNA_00174 0.51 -0.0
190,432 - CCNA_00174 0.51 +1.3
190,450 + CCNA_00174 0.53 +0.5
190,457 + CCNA_00174 0.53 -1.2
190,505 + CCNA_00174 0.57 +1.1
190,540 + CCNA_00174 0.60 -1.7
190,603 + CCNA_00174 0.66 -0.7
190,624 - CCNA_00174 0.67 +0.3
190,624 - CCNA_00174 0.67 -0.1
190,631 - CCNA_00174 0.68 -0.1
190,661 + CCNA_00174 0.70 -1.3
190,661 + CCNA_00174 0.70 -1.3
190,669 - CCNA_00174 0.71 -1.1
190,678 - CCNA_00174 0.72 -1.5
190,684 - CCNA_00174 0.72 -0.3
190,694 + CCNA_00174 0.73 -0.6
190,696 + CCNA_00174 0.73 -1.1
190,696 + CCNA_00174 0.73 -0.4
190,696 + CCNA_00174 0.73 -0.3
190,696 + CCNA_00174 0.73 -1.3
190,696 + CCNA_00174 0.73 +1.5
190,696 + CCNA_00174 0.73 +0.7
190,704 - CCNA_00174 0.74 -1.4
190,704 - CCNA_00174 0.74 +0.4
190,708 + CCNA_00174 0.74 -1.9
190,709 - CCNA_00174 0.74 -0.8
190,709 - CCNA_00174 0.74 -1.0
190,716 - CCNA_00174 0.75 -1.0
190,716 - CCNA_00174 0.75 -0.8
190,762 + CCNA_00174 0.79 +1.6
190,762 + CCNA_00174 0.79 +0.3
190,762 + CCNA_00174 0.79 -1.1
190,837 - CCNA_00174 0.85 -0.9
190,840 + CCNA_00174 0.85 -2.0
190,848 - CCNA_00174 0.86 -2.5
190,850 + CCNA_00174 0.86 +0.6
190,858 - CCNA_00174 0.87 -1.3
190,858 - CCNA_00174 0.87 -0.9
190,915 - -1.3
190,915 - -1.1
191,009 + -2.4
191,022 - +2.3
191,037 - +1.2
191,081 + CCNA_00175 0.11 +1.3
191,081 + CCNA_00175 0.11 -1.5
191,089 - CCNA_00175 0.13 -1.7
191,089 - CCNA_00175 0.13 +0.3
191,096 + CCNA_00175 0.14 -1.1
191,097 + CCNA_00175 0.14 -0.5
191,099 - CCNA_00175 0.15 -1.6
191,220 - CCNA_00175 0.42 -1.3
191,229 - CCNA_00175 0.43 +1.1
191,268 + CCNA_00175 0.52 -0.7
191,300 + CCNA_00175 0.59 +0.3
191,300 + CCNA_00175 0.59 -0.7
191,307 - CCNA_00175 0.61 -1.0
191,312 - CCNA_00175 0.62 +1.1
191,312 - CCNA_00175 0.62 +0.2
191,357 - CCNA_00175 0.72 -0.3
191,357 - CCNA_00175 0.72 +0.6
191,357 - CCNA_00175 0.72 +0.2
191,357 - CCNA_00175 0.72 +1.9
191,410 - -0.4
191,434 - +0.1
191,452 + -0.1
191,493 - CCNA_00176 0.17 -0.5
191,493 - CCNA_00176 0.17 -0.5
191,494 + CCNA_00176 0.17 -2.1
191,502 - CCNA_00176 0.18 -2.0
191,513 + CCNA_00176 0.20 -0.9
191,518 + CCNA_00176 0.21 -1.6
191,523 + CCNA_00176 0.22 -0.4
191,523 + CCNA_00176 0.22 +1.1
191,523 + CCNA_00176 0.22 +1.4
191,531 - CCNA_00176 0.24 -0.4
191,531 - CCNA_00176 0.24 +0.7
191,531 - CCNA_00176 0.24 -1.4
191,533 + CCNA_00176 0.24 -2.2
191,539 + CCNA_00176 0.25 -0.2
191,547 - CCNA_00176 0.27 -1.6
191,572 + CCNA_00176 0.31 +0.2
191,584 + CCNA_00176 0.33 +0.6
191,585 + CCNA_00176 0.33 +0.6
191,594 - CCNA_00176 0.35 +0.1
191,594 - CCNA_00176 0.35 -0.6
191,618 + CCNA_00176 0.39 -2.0
191,672 + CCNA_00176 0.49 -1.4
191,677 + CCNA_00176 0.50 -1.5
191,703 - CCNA_00176 0.54 +0.5
191,753 + CCNA_00176 0.63 -0.6
191,761 - CCNA_00176 0.65 -1.1
191,788 + CCNA_00176 0.70 -0.9
191,796 - CCNA_00176 0.71 -0.2
191,807 - CCNA_00176 0.73 -1.1
191,843 - CCNA_00176 0.80 -0.6
191,849 + CCNA_00176 0.81 -2.0
191,857 - CCNA_00176 0.82 -0.2
191,882 - CCNA_00176 0.87 +0.1
191,919 + +0.9
191,962 + -1.5
192,018 + CCNA_00177 0.24 +1.4
192,080 + CCNA_00177 0.40 -0.4
192,138 + CCNA_00177 0.55 -0.8
192,138 + CCNA_00177 0.55 +0.1
192,146 - CCNA_00177 0.58 -0.8
192,146 - CCNA_00177 0.58 -1.5
192,146 - CCNA_00177 0.58 +1.5
192,146 - CCNA_00177 0.58 -1.1
192,184 + CCNA_00177 0.67 -0.6
192,198 + CCNA_00177 0.71 +0.1
192,251 - CCNA_00177 0.85 +0.1
192,251 - CCNA_00177 0.85 -0.9
192,290 + -1.5
192,290 + -0.6
192,290 + -2.2
192,290 + +0.7
192,290 + +0.0
192,290 + -0.5
192,298 - -0.8
192,298 - +0.3
192,298 - -0.7
192,310 + -1.8
192,312 + +0.3
192,320 - +1.1
192,341 + -1.0
192,349 - +0.4
192,366 - CCNA_00178 0.10 -1.3
192,385 - CCNA_00178 0.14 -0.7
192,395 - CCNA_00178 0.15 +1.1
192,435 + CCNA_00178 0.22 -0.3
192,486 - CCNA_00178 0.31 +0.4
192,553 - CCNA_00178 0.42 +0.5
192,579 + CCNA_00178 0.46 -0.4
192,592 - CCNA_00178 0.49 +1.0
192,622 - CCNA_00178 0.54 +0.0
192,631 + +0.9
192,650 - CCNA_00178 0.58 -1.0
192,652 + CCNA_00178 0.59 -1.1
192,653 + CCNA_00178 0.59 -1.8
192,653 + CCNA_00178 0.59 -1.6
192,660 - CCNA_00178 0.60 -1.3
192,661 - CCNA_00178 0.60 +0.5
192,694 - CCNA_00178 0.66 -0.6
192,696 - CCNA_00178 0.66 -2.5
192,699 - CCNA_00178 0.67 -0.4
192,699 - CCNA_00178 0.67 -0.8
192,702 + CCNA_00178 0.67 +0.7
192,729 - CCNA_00178 0.72 +0.9
192,758 - CCNA_00178 0.77 -0.2
192,769 + CCNA_00178 0.79 +1.3
192,771 - CCNA_00178 0.79 +0.6
192,776 - CCNA_00178 0.80 -0.4
192,784 - CCNA_00178 0.81 -1.9
192,818 + CCNA_00178 0.87 -0.6
192,824 + CCNA_00178 0.88 -1.1
192,832 - CCNA_00178 0.89 -1.3
192,876 + -1.5
192,876 + -0.7
192,876 - -0.4
192,878 - -0.7
192,884 - +0.4
192,884 - -1.1
192,884 - -0.5
192,886 + +0.4
192,912 - -1.5
192,919 + +1.3
192,942 - -0.2

Or see this region's nucleotide sequence