Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00163

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00162 and CCNA_00163 are separated by 46 nucleotidesCCNA_00163 and CCNA_00164 overlap by 11 nucleotides CCNA_00162: CCNA_00162 - hypothetical protein, at 171,649 to 172,917 _00162 CCNA_00163: CCNA_00163 - exopolysaccharide transport family protein, at 172,964 to 175,183 _00163 CCNA_00164: CCNA_00164 - O-antigen polymerase, at 175,173 to 177,098 _00164 Position (kb) 172 173 174 175 176Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 171.982 kb on - strand, within CCNA_00162at 172.024 kb on + strand, within CCNA_00162at 172.058 kb on + strand, within CCNA_00162at 172.068 kb on + strand, within CCNA_00162at 172.073 kb on + strand, within CCNA_00162at 172.111 kb on + strand, within CCNA_00162at 172.236 kb on + strand, within CCNA_00162at 172.494 kb on + strand, within CCNA_00162at 172.601 kb on + strand, within CCNA_00162at 172.906 kb on + strandat 172.911 kb on + strandat 172.961 kb on + strandat 173.155 kb on + strandat 173.155 kb on + strandat 173.155 kb on + strandat 173.155 kb on + strandat 173.163 kb on - strandat 173.163 kb on - strandat 173.291 kb on - strand, within CCNA_00163at 173.332 kb on + strand, within CCNA_00163at 173.340 kb on - strand, within CCNA_00163at 173.359 kb on + strand, within CCNA_00163at 173.434 kb on - strand, within CCNA_00163at 173.457 kb on + strand, within CCNA_00163at 173.477 kb on + strand, within CCNA_00163at 173.618 kb on + strand, within CCNA_00163at 173.628 kb on + strand, within CCNA_00163at 173.658 kb on - strand, within CCNA_00163at 173.713 kb on + strand, within CCNA_00163at 173.798 kb on + strand, within CCNA_00163at 173.806 kb on - strand, within CCNA_00163at 173.806 kb on - strand, within CCNA_00163at 173.835 kb on + strand, within CCNA_00163at 173.835 kb on + strand, within CCNA_00163at 173.973 kb on + strand, within CCNA_00163at 174.022 kb on + strand, within CCNA_00163at 174.103 kb on + strand, within CCNA_00163at 174.103 kb on - strand, within CCNA_00163at 174.132 kb on + strand, within CCNA_00163at 174.132 kb on + strand, within CCNA_00163at 174.181 kb on + strand, within CCNA_00163at 174.211 kb on + strand, within CCNA_00163at 174.235 kb on - strand, within CCNA_00163at 174.269 kb on + strand, within CCNA_00163at 174.269 kb on + strand, within CCNA_00163at 174.279 kb on + strand, within CCNA_00163at 174.288 kb on + strand, within CCNA_00163at 174.322 kb on + strand, within CCNA_00163at 174.435 kb on - strand, within CCNA_00163at 174.437 kb on + strand, within CCNA_00163at 174.437 kb on + strand, within CCNA_00163at 174.437 kb on + strand, within CCNA_00163at 174.437 kb on + strand, within CCNA_00163at 174.445 kb on - strand, within CCNA_00163at 174.445 kb on - strand, within CCNA_00163at 174.455 kb on + strand, within CCNA_00163at 174.508 kb on + strand, within CCNA_00163at 174.528 kb on - strand, within CCNA_00163at 174.608 kb on - strand, within CCNA_00163at 174.660 kb on + strand, within CCNA_00163at 174.660 kb on + strand, within CCNA_00163at 174.704 kb on - strand, within CCNA_00163at 174.783 kb on + strand, within CCNA_00163at 174.791 kb on - strand, within CCNA_00163at 174.818 kb on + strand, within CCNA_00163at 174.818 kb on + strand, within CCNA_00163at 174.849 kb on - strand, within CCNA_00163at 174.963 kb on + strandat 175.024 kb on + strandat 175.024 kb on + strandat 175.024 kb on + strandat 175.032 kb on - strandat 175.032 kb on - strandat 175.054 kb on + strandat 175.225 kb on + strandat 175.242 kb on + strandat 175.250 kb on - strandat 175.278 kb on - strandat 175.401 kb on + strand, within CCNA_00164at 175.416 kb on + strand, within CCNA_00164at 175.649 kb on + strand, within CCNA_00164at 175.649 kb on + strand, within CCNA_00164at 175.649 kb on + strand, within CCNA_00164at 175.649 kb on + strand, within CCNA_00164at 175.649 kb on + strand, within CCNA_00164at 175.654 kb on + strand, within CCNA_00164at 175.657 kb on - strand, within CCNA_00164at 175.657 kb on - strand, within CCNA_00164at 175.681 kb on + strand, within CCNA_00164at 175.686 kb on + strand, within CCNA_00164at 175.689 kb on - strand, within CCNA_00164at 175.694 kb on - strand, within CCNA_00164at 175.758 kb on - strand, within CCNA_00164at 175.826 kb on + strand, within CCNA_00164at 175.884 kb on - strand, within CCNA_00164at 175.918 kb on - strand, within CCNA_00164at 175.985 kb on + strand, within CCNA_00164at 175.985 kb on + strand, within CCNA_00164at 175.991 kb on + strand, within CCNA_00164at 175.999 kb on - strand, within CCNA_00164at 176.014 kb on - strand, within CCNA_00164at 176.039 kb on + strand, within CCNA_00164at 176.042 kb on - strand, within CCNA_00164at 176.060 kb on - strand, within CCNA_00164at 176.068 kb on + strand, within CCNA_00164at 176.075 kb on + strand, within CCNA_00164at 176.126 kb on + strand, within CCNA_00164at 176.146 kb on + strand, within CCNA_00164at 176.175 kb on + strand, within CCNA_00164

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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171,982 - CCNA_00162 0.26 +0.4
172,024 + CCNA_00162 0.30 +4.6
172,058 + CCNA_00162 0.32 +4.4
172,068 + CCNA_00162 0.33 +4.3
172,073 + CCNA_00162 0.33 +4.3
172,111 + CCNA_00162 0.36 +4.2
172,236 + CCNA_00162 0.46 +3.9
172,494 + CCNA_00162 0.67 +4.2
172,601 + CCNA_00162 0.75 +5.0
172,906 + +3.8
172,911 + +4.2
172,961 + +4.6
173,155 + +3.6
173,155 + +4.1
173,155 + +3.5
173,155 + +4.1
173,163 - -0.9
173,163 - -0.2
173,291 - CCNA_00163 0.15 -0.8
173,332 + CCNA_00163 0.17 +2.9
173,340 - CCNA_00163 0.17 -0.1
173,359 + CCNA_00163 0.18 +3.6
173,434 - CCNA_00163 0.21 -0.1
173,457 + CCNA_00163 0.22 +2.8
173,477 + CCNA_00163 0.23 +2.9
173,618 + CCNA_00163 0.29 +2.7
173,628 + CCNA_00163 0.30 +3.8
173,658 - CCNA_00163 0.31 -0.0
173,713 + CCNA_00163 0.34 +3.7
173,798 + CCNA_00163 0.38 +3.3
173,806 - CCNA_00163 0.38 -0.8
173,806 - CCNA_00163 0.38 -0.8
173,835 + CCNA_00163 0.39 +3.6
173,835 + CCNA_00163 0.39 +3.6
173,973 + CCNA_00163 0.45 +2.5
174,022 + CCNA_00163 0.48 +3.1
174,103 + CCNA_00163 0.51 +3.8
174,103 - CCNA_00163 0.51 -0.6
174,132 + CCNA_00163 0.53 +3.7
174,132 + CCNA_00163 0.53 +3.4
174,181 + CCNA_00163 0.55 +3.2
174,211 + CCNA_00163 0.56 +3.5
174,235 - CCNA_00163 0.57 -1.1
174,269 + CCNA_00163 0.59 +3.4
174,269 + CCNA_00163 0.59 +3.3
174,279 + CCNA_00163 0.59 +2.9
174,288 + CCNA_00163 0.60 +3.4
174,322 + CCNA_00163 0.61 +3.0
174,435 - CCNA_00163 0.66 -1.2
174,437 + CCNA_00163 0.66 +1.4
174,437 + CCNA_00163 0.66 +2.5
174,437 + CCNA_00163 0.66 +2.9
174,437 + CCNA_00163 0.66 +2.7
174,445 - CCNA_00163 0.67 -1.3
174,445 - CCNA_00163 0.67 -0.8
174,455 + CCNA_00163 0.67 +2.8
174,508 + CCNA_00163 0.70 +3.6
174,528 - CCNA_00163 0.70 -1.2
174,608 - CCNA_00163 0.74 +0.5
174,660 + CCNA_00163 0.76 +3.3
174,660 + CCNA_00163 0.76 +3.5
174,704 - CCNA_00163 0.78 -1.8
174,783 + CCNA_00163 0.82 +3.9
174,791 - CCNA_00163 0.82 +2.4
174,818 + CCNA_00163 0.84 +2.7
174,818 + CCNA_00163 0.84 +2.7
174,849 - CCNA_00163 0.85 -0.7
174,963 + +3.1
175,024 + +3.3
175,024 + +0.5
175,024 + +2.7
175,032 - -1.1
175,032 - -2.2
175,054 + +3.3
175,225 + +4.4
175,242 + +4.2
175,250 - -1.7
175,278 - +1.0
175,401 + CCNA_00164 0.12 +2.2
175,416 + CCNA_00164 0.13 +2.5
175,649 + CCNA_00164 0.25 +2.4
175,649 + CCNA_00164 0.25 +2.8
175,649 + CCNA_00164 0.25 +2.3
175,649 + CCNA_00164 0.25 +2.5
175,649 + CCNA_00164 0.25 +2.5
175,654 + CCNA_00164 0.25 +3.1
175,657 - CCNA_00164 0.25 -0.3
175,657 - CCNA_00164 0.25 -0.0
175,681 + CCNA_00164 0.26 +2.0
175,686 + CCNA_00164 0.27 +2.2
175,689 - CCNA_00164 0.27 +0.3
175,694 - CCNA_00164 0.27 +0.8
175,758 - CCNA_00164 0.30 -2.2
175,826 + CCNA_00164 0.34 +3.6
175,884 - CCNA_00164 0.37 -1.3
175,918 - CCNA_00164 0.39 -0.6
175,985 + CCNA_00164 0.42 +2.9
175,985 + CCNA_00164 0.42 +2.7
175,991 + CCNA_00164 0.42 +2.8
175,999 - CCNA_00164 0.43 +0.8
176,014 - CCNA_00164 0.44 -1.0
176,039 + CCNA_00164 0.45 +2.9
176,042 - CCNA_00164 0.45 +1.0
176,060 - CCNA_00164 0.46 +1.2
176,068 + CCNA_00164 0.46 +2.4
176,075 + CCNA_00164 0.47 +1.7
176,126 + CCNA_00164 0.49 +2.9
176,146 + CCNA_00164 0.51 +2.9
176,175 + CCNA_00164 0.52 +3.5

Or see this region's nucleotide sequence