Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00160

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00159 and CCNA_00160 are separated by 140 nucleotidesCCNA_00160 and CCNA_00161 are separated by 424 nucleotides CCNA_00159: CCNA_00159 - DNA gyrase subunit B, at 166,781 to 169,246 _00159 CCNA_00160: CCNA_00160 - methyl-accepting chemotaxis protein, at 169,387 to 170,526 _00160 CCNA_00161: CCNA_00161 - hypothetical protein, at 170,951 to 171,577 _00161 Position (kb) 169 170 171Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 169.302 kb on + strandat 169.302 kb on + strandat 169.307 kb on + strandat 169.315 kb on - strandat 169.351 kb on + strandat 169.384 kb on + strandat 169.437 kb on + strandat 169.452 kb on + strandat 169.454 kb on + strandat 169.460 kb on - strandat 169.462 kb on - strandat 169.466 kb on + strandat 169.467 kb on - strandat 169.469 kb on - strandat 169.480 kb on - strandat 169.512 kb on + strand, within CCNA_00160at 169.515 kb on - strand, within CCNA_00160at 169.527 kb on + strand, within CCNA_00160at 169.551 kb on + strand, within CCNA_00160at 169.558 kb on - strand, within CCNA_00160at 169.618 kb on + strand, within CCNA_00160at 169.624 kb on + strand, within CCNA_00160at 169.626 kb on - strand, within CCNA_00160at 169.626 kb on - strand, within CCNA_00160at 169.639 kb on + strand, within CCNA_00160at 169.647 kb on + strand, within CCNA_00160at 169.701 kb on + strand, within CCNA_00160at 169.706 kb on + strand, within CCNA_00160at 169.714 kb on - strand, within CCNA_00160at 169.744 kb on + strand, within CCNA_00160at 169.744 kb on + strand, within CCNA_00160at 169.763 kb on + strand, within CCNA_00160at 169.778 kb on + strand, within CCNA_00160at 169.783 kb on + strand, within CCNA_00160at 169.786 kb on - strand, within CCNA_00160at 169.822 kb on + strand, within CCNA_00160at 169.829 kb on + strand, within CCNA_00160at 169.829 kb on + strand, within CCNA_00160at 169.835 kb on - strand, within CCNA_00160at 169.835 kb on - strand, within CCNA_00160at 169.835 kb on - strand, within CCNA_00160at 169.837 kb on - strand, within CCNA_00160at 169.837 kb on - strand, within CCNA_00160at 169.864 kb on + strand, within CCNA_00160at 169.872 kb on - strand, within CCNA_00160at 169.874 kb on + strand, within CCNA_00160at 169.874 kb on + strand, within CCNA_00160at 169.877 kb on - strand, within CCNA_00160at 169.882 kb on - strand, within CCNA_00160at 169.882 kb on - strand, within CCNA_00160at 169.882 kb on - strand, within CCNA_00160at 169.923 kb on + strand, within CCNA_00160at 169.931 kb on - strand, within CCNA_00160at 169.931 kb on - strand, within CCNA_00160at 169.941 kb on + strand, within CCNA_00160at 169.949 kb on - strand, within CCNA_00160at 169.978 kb on + strand, within CCNA_00160at 169.978 kb on + strand, within CCNA_00160at 169.978 kb on + strand, within CCNA_00160at 169.978 kb on + strand, within CCNA_00160at 169.986 kb on - strand, within CCNA_00160at 169.986 kb on - strand, within CCNA_00160at 169.986 kb on - strand, within CCNA_00160at 170.057 kb on + strand, within CCNA_00160at 170.057 kb on + strand, within CCNA_00160at 170.065 kb on - strand, within CCNA_00160at 170.065 kb on - strand, within CCNA_00160at 170.065 kb on - strand, within CCNA_00160at 170.068 kb on + strand, within CCNA_00160at 170.068 kb on + strand, within CCNA_00160at 170.068 kb on + strand, within CCNA_00160at 170.115 kb on + strand, within CCNA_00160at 170.118 kb on - strand, within CCNA_00160at 170.123 kb on - strand, within CCNA_00160at 170.125 kb on + strand, within CCNA_00160at 170.125 kb on + strand, within CCNA_00160at 170.125 kb on + strand, within CCNA_00160at 170.135 kb on - strand, within CCNA_00160at 170.194 kb on + strand, within CCNA_00160at 170.194 kb on + strand, within CCNA_00160at 170.194 kb on + strand, within CCNA_00160at 170.194 kb on + strand, within CCNA_00160at 170.196 kb on - strand, within CCNA_00160at 170.201 kb on - strand, within CCNA_00160at 170.202 kb on - strand, within CCNA_00160at 170.202 kb on - strand, within CCNA_00160at 170.202 kb on - strand, within CCNA_00160at 170.202 kb on - strand, within CCNA_00160at 170.202 kb on - strand, within CCNA_00160at 170.216 kb on + strand, within CCNA_00160at 170.230 kb on + strand, within CCNA_00160at 170.235 kb on + strand, within CCNA_00160at 170.238 kb on - strand, within CCNA_00160at 170.260 kb on + strand, within CCNA_00160at 170.267 kb on + strand, within CCNA_00160at 170.267 kb on + strand, within CCNA_00160at 170.268 kb on - strand, within CCNA_00160at 170.268 kb on - strand, within CCNA_00160at 170.299 kb on + strand, within CCNA_00160at 170.307 kb on - strand, within CCNA_00160at 170.347 kb on - strand, within CCNA_00160at 170.353 kb on + strand, within CCNA_00160at 170.360 kb on - strand, within CCNA_00160at 170.368 kb on + strand, within CCNA_00160at 170.368 kb on - strand, within CCNA_00160at 170.368 kb on - strand, within CCNA_00160at 170.368 kb on - strand, within CCNA_00160at 170.373 kb on - strand, within CCNA_00160at 170.373 kb on - strand, within CCNA_00160at 170.477 kb on + strandat 170.482 kb on + strandat 170.512 kb on + strandat 170.541 kb on - strandat 170.559 kb on - strandat 170.581 kb on + strandat 170.588 kb on - strandat 170.609 kb on - strandat 170.621 kb on - strandat 170.727 kb on + strandat 170.735 kb on - strandat 170.798 kb on - strandat 170.907 kb on + strandat 170.915 kb on - strandat 170.963 kb on + strandat 171.085 kb on + strand, within CCNA_00161at 171.266 kb on + strand, within CCNA_00161at 171.266 kb on + strand, within CCNA_00161at 171.405 kb on + strand, within CCNA_00161at 171.421 kb on + strand, within CCNA_00161at 171.438 kb on + strand, within CCNA_00161at 171.464 kb on + strand, within CCNA_00161

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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169,302 + +2.1
169,302 + +2.8
169,307 + +2.2
169,315 - -0.2
169,351 + +0.8
169,384 + +0.2
169,437 + +0.9
169,452 + +1.1
169,454 + +1.1
169,460 - -0.5
169,462 - -0.6
169,466 + -0.7
169,467 - +0.9
169,469 - +0.2
169,480 - +0.7
169,512 + CCNA_00160 0.11 +0.0
169,515 - CCNA_00160 0.11 -0.4
169,527 + CCNA_00160 0.12 -0.4
169,551 + CCNA_00160 0.14 +0.6
169,558 - CCNA_00160 0.15 +0.0
169,618 + CCNA_00160 0.20 +0.9
169,624 + CCNA_00160 0.21 -1.2
169,626 - CCNA_00160 0.21 -0.2
169,626 - CCNA_00160 0.21 -1.6
169,639 + CCNA_00160 0.22 +0.5
169,647 + CCNA_00160 0.23 +0.3
169,701 + CCNA_00160 0.28 +2.6
169,706 + CCNA_00160 0.28 -0.1
169,714 - CCNA_00160 0.29 -0.3
169,744 + CCNA_00160 0.31 +1.4
169,744 + CCNA_00160 0.31 -0.8
169,763 + CCNA_00160 0.33 -0.1
169,778 + CCNA_00160 0.34 -0.8
169,783 + CCNA_00160 0.35 +1.3
169,786 - CCNA_00160 0.35 +0.0
169,822 + CCNA_00160 0.38 +1.1
169,829 + CCNA_00160 0.39 +1.2
169,829 + CCNA_00160 0.39 +0.6
169,835 - CCNA_00160 0.39 +0.7
169,835 - CCNA_00160 0.39 -0.9
169,835 - CCNA_00160 0.39 -1.1
169,837 - CCNA_00160 0.39 -1.2
169,837 - CCNA_00160 0.39 +0.2
169,864 + CCNA_00160 0.42 -0.6
169,872 - CCNA_00160 0.43 +0.6
169,874 + CCNA_00160 0.43 -0.2
169,874 + CCNA_00160 0.43 +0.0
169,877 - CCNA_00160 0.43 +0.2
169,882 - CCNA_00160 0.43 +0.2
169,882 - CCNA_00160 0.43 +0.5
169,882 - CCNA_00160 0.43 -0.6
169,923 + CCNA_00160 0.47 -0.5
169,931 - CCNA_00160 0.48 -0.8
169,931 - CCNA_00160 0.48 -1.2
169,941 + CCNA_00160 0.49 -0.7
169,949 - CCNA_00160 0.49 +0.5
169,978 + CCNA_00160 0.52 -0.2
169,978 + CCNA_00160 0.52 +0.2
169,978 + CCNA_00160 0.52 +0.4
169,978 + CCNA_00160 0.52 +0.3
169,986 - CCNA_00160 0.53 -0.8
169,986 - CCNA_00160 0.53 -2.1
169,986 - CCNA_00160 0.53 +0.4
170,057 + CCNA_00160 0.59 +0.8
170,057 + CCNA_00160 0.59 +0.7
170,065 - CCNA_00160 0.59 -0.2
170,065 - CCNA_00160 0.59 -0.4
170,065 - CCNA_00160 0.59 -0.3
170,068 + CCNA_00160 0.60 +0.4
170,068 + CCNA_00160 0.60 -0.3
170,068 + CCNA_00160 0.60 -3.1
170,115 + CCNA_00160 0.64 +1.0
170,118 - CCNA_00160 0.64 -0.3
170,123 - CCNA_00160 0.65 -0.9
170,125 + CCNA_00160 0.65 +1.3
170,125 + CCNA_00160 0.65 +1.4
170,125 + CCNA_00160 0.65 +0.4
170,135 - CCNA_00160 0.66 -0.8
170,194 + CCNA_00160 0.71 +0.1
170,194 + CCNA_00160 0.71 -0.4
170,194 + CCNA_00160 0.71 +0.9
170,194 + CCNA_00160 0.71 +0.2
170,196 - CCNA_00160 0.71 -0.3
170,201 - CCNA_00160 0.71 -2.1
170,202 - CCNA_00160 0.71 +0.1
170,202 - CCNA_00160 0.71 -0.1
170,202 - CCNA_00160 0.71 -1.7
170,202 - CCNA_00160 0.71 -1.1
170,202 - CCNA_00160 0.71 -0.4
170,216 + CCNA_00160 0.73 -0.1
170,230 + CCNA_00160 0.74 +0.1
170,235 + CCNA_00160 0.74 -0.4
170,238 - CCNA_00160 0.75 -0.1
170,260 + CCNA_00160 0.77 -0.3
170,267 + CCNA_00160 0.77 +4.3
170,267 + CCNA_00160 0.77 +4.1
170,268 - CCNA_00160 0.77 -0.2
170,268 - CCNA_00160 0.77 -0.3
170,299 + CCNA_00160 0.80 +0.4
170,307 - CCNA_00160 0.81 +2.1
170,347 - CCNA_00160 0.84 -0.9
170,353 + CCNA_00160 0.85 -0.9
170,360 - CCNA_00160 0.85 -1.1
170,368 + CCNA_00160 0.86 -0.2
170,368 - CCNA_00160 0.86 -0.7
170,368 - CCNA_00160 0.86 -0.1
170,368 - CCNA_00160 0.86 -1.0
170,373 - CCNA_00160 0.86 -2.7
170,373 - CCNA_00160 0.86 -1.4
170,477 + -0.8
170,482 + -1.1
170,512 + -0.9
170,541 - +1.4
170,559 - +0.1
170,581 + -0.7
170,588 - -0.5
170,609 - -0.5
170,621 - +1.0
170,727 + +1.6
170,735 - -2.2
170,798 - -0.3
170,907 + +2.2
170,915 - +0.1
170,963 + +4.4
171,085 + CCNA_00161 0.21 +4.6
171,266 + CCNA_00161 0.50 +4.8
171,266 + CCNA_00161 0.50 +4.8
171,405 + CCNA_00161 0.72 +4.7
171,421 + CCNA_00161 0.75 +4.8
171,438 + CCNA_00161 0.78 +4.7
171,464 + CCNA_00161 0.82 +4.7

Or see this region's nucleotide sequence