Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00143

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00141 and CCNA_00142 are separated by 1 nucleotidesCCNA_00142 and CCNA_00143 overlap by 1 nucleotidesCCNA_00143 and CCNA_00144 are separated by 34 nucleotides CCNA_00141: CCNA_00141 - tetratricopeptide repeat family protein, at 153,718 to 154,533 _00141 CCNA_00142: CCNA_00142 - endonuclease, at 154,535 to 154,912 _00142 CCNA_00143: CCNA_00143 - ribosomal RNA small subunit methyltransferase I, at 154,912 to 155,784 _00143 CCNA_00144: CCNA_00144 - oxygen-independent coproporphyrinogen-III oxidase, at 155,819 to 156,973 _00144 Position (kb) 154 155 156Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 153.933 kb on - strand, within CCNA_00141at 153.970 kb on + strand, within CCNA_00141at 153.970 kb on + strand, within CCNA_00141at 153.975 kb on + strand, within CCNA_00141at 153.978 kb on - strand, within CCNA_00141at 153.978 kb on - strand, within CCNA_00141at 153.978 kb on - strand, within CCNA_00141at 153.991 kb on + strand, within CCNA_00141at 154.033 kb on + strand, within CCNA_00141at 154.041 kb on - strand, within CCNA_00141at 154.041 kb on - strand, within CCNA_00141at 154.073 kb on - strand, within CCNA_00141at 154.073 kb on - strand, within CCNA_00141at 154.080 kb on - strand, within CCNA_00141at 154.081 kb on + strand, within CCNA_00141at 154.099 kb on - strand, within CCNA_00141at 154.101 kb on + strand, within CCNA_00141at 154.122 kb on + strand, within CCNA_00141at 154.163 kb on + strand, within CCNA_00141at 154.173 kb on + strand, within CCNA_00141at 154.181 kb on - strand, within CCNA_00141at 154.211 kb on - strand, within CCNA_00141at 154.226 kb on + strand, within CCNA_00141at 154.235 kb on + strand, within CCNA_00141at 154.243 kb on - strand, within CCNA_00141at 154.245 kb on + strand, within CCNA_00141at 154.278 kb on + strand, within CCNA_00141at 154.286 kb on - strand, within CCNA_00141at 154.286 kb on - strand, within CCNA_00141at 154.286 kb on - strand, within CCNA_00141at 154.331 kb on + strand, within CCNA_00141at 154.332 kb on - strand, within CCNA_00141at 154.332 kb on - strand, within CCNA_00141at 154.332 kb on - strand, within CCNA_00141at 154.401 kb on - strand, within CCNA_00141at 154.401 kb on - strand, within CCNA_00141at 154.442 kb on + strand, within CCNA_00141at 154.442 kb on + strand, within CCNA_00141at 154.442 kb on + strand, within CCNA_00141at 154.442 kb on + strand, within CCNA_00141at 154.442 kb on + strand, within CCNA_00141at 154.442 kb on + strand, within CCNA_00141at 154.442 kb on + strand, within CCNA_00141at 154.442 kb on + strand, within CCNA_00141at 154.442 kb on + strand, within CCNA_00141at 154.442 kb on + strand, within CCNA_00141at 154.442 kb on + strand, within CCNA_00141at 154.442 kb on + strand, within CCNA_00141at 154.447 kb on + strand, within CCNA_00141at 154.447 kb on + strand, within CCNA_00141at 154.450 kb on - strand, within CCNA_00141at 154.450 kb on - strand, within CCNA_00141at 154.450 kb on - strand, within CCNA_00141at 154.450 kb on - strand, within CCNA_00141at 154.450 kb on - strand, within CCNA_00141at 154.455 kb on - strandat 154.455 kb on - strandat 154.455 kb on - strandat 154.455 kb on - strandat 154.457 kb on + strandat 154.465 kb on - strandat 154.465 kb on - strandat 154.496 kb on + strandat 154.511 kb on + strandat 154.521 kb on + strandat 154.533 kb on + strandat 154.587 kb on + strand, within CCNA_00142at 154.619 kb on + strand, within CCNA_00142at 154.624 kb on + strand, within CCNA_00142at 154.632 kb on - strand, within CCNA_00142at 154.632 kb on - strand, within CCNA_00142at 154.684 kb on + strand, within CCNA_00142at 154.684 kb on + strand, within CCNA_00142at 154.692 kb on - strand, within CCNA_00142at 154.692 kb on - strand, within CCNA_00142at 154.692 kb on - strand, within CCNA_00142at 154.692 kb on - strand, within CCNA_00142at 154.692 kb on - strand, within CCNA_00142at 154.692 kb on - strand, within CCNA_00142at 154.735 kb on - strand, within CCNA_00142at 154.747 kb on - strand, within CCNA_00142at 154.747 kb on - strand, within CCNA_00142at 154.759 kb on + strand, within CCNA_00142at 154.817 kb on + strand, within CCNA_00142at 154.867 kb on - strand, within CCNA_00142at 154.894 kb on + strandat 154.902 kb on - strandat 154.915 kb on + strandat 154.953 kb on - strandat 155.002 kb on - strand, within CCNA_00143at 155.014 kb on + strand, within CCNA_00143at 155.022 kb on - strand, within CCNA_00143at 155.031 kb on + strand, within CCNA_00143at 155.156 kb on - strand, within CCNA_00143at 155.186 kb on - strand, within CCNA_00143at 155.196 kb on - strand, within CCNA_00143at 155.308 kb on + strand, within CCNA_00143at 155.380 kb on + strand, within CCNA_00143at 155.387 kb on - strand, within CCNA_00143at 155.424 kb on + strand, within CCNA_00143at 155.465 kb on - strand, within CCNA_00143at 155.465 kb on - strand, within CCNA_00143at 155.486 kb on + strand, within CCNA_00143at 155.503 kb on - strand, within CCNA_00143at 155.508 kb on - strand, within CCNA_00143at 155.566 kb on - strand, within CCNA_00143at 155.599 kb on - strand, within CCNA_00143at 155.685 kb on + strand, within CCNA_00143at 155.693 kb on - strand, within CCNA_00143at 155.757 kb on + strandat 155.760 kb on - strandat 155.760 kb on - strandat 155.785 kb on - strandat 155.814 kb on - strandat 155.863 kb on - strandat 155.874 kb on + strandat 155.874 kb on + strandat 155.882 kb on - strandat 155.882 kb on - strandat 155.910 kb on + strandat 155.918 kb on - strandat 155.918 kb on - strandat 155.918 kb on - strandat 155.921 kb on + strandat 155.929 kb on + strandat 155.929 kb on + strandat 155.944 kb on + strand, within CCNA_00144at 155.944 kb on + strand, within CCNA_00144at 155.944 kb on + strand, within CCNA_00144at 155.951 kb on + strand, within CCNA_00144at 155.952 kb on - strand, within CCNA_00144at 155.959 kb on - strand, within CCNA_00144at 155.968 kb on + strand, within CCNA_00144at 155.968 kb on + strand, within CCNA_00144at 155.968 kb on + strand, within CCNA_00144at 155.976 kb on - strand, within CCNA_00144at 155.976 kb on - strand, within CCNA_00144at 155.976 kb on - strand, within CCNA_00144at 155.976 kb on - strand, within CCNA_00144at 155.976 kb on - strand, within CCNA_00144at 155.976 kb on - strand, within CCNA_00144at 155.999 kb on + strand, within CCNA_00144at 156.000 kb on + strand, within CCNA_00144at 156.008 kb on - strand, within CCNA_00144at 156.008 kb on - strand, within CCNA_00144at 156.014 kb on + strand, within CCNA_00144at 156.014 kb on + strand, within CCNA_00144at 156.014 kb on + strand, within CCNA_00144at 156.014 kb on + strand, within CCNA_00144at 156.014 kb on + strand, within CCNA_00144at 156.022 kb on - strand, within CCNA_00144at 156.022 kb on - strand, within CCNA_00144at 156.022 kb on - strand, within CCNA_00144at 156.022 kb on - strand, within CCNA_00144at 156.022 kb on - strand, within CCNA_00144at 156.022 kb on - strand, within CCNA_00144at 156.089 kb on - strand, within CCNA_00144at 156.092 kb on - strand, within CCNA_00144at 156.097 kb on - strand, within CCNA_00144at 156.154 kb on - strand, within CCNA_00144at 156.206 kb on - strand, within CCNA_00144at 156.211 kb on - strand, within CCNA_00144at 156.227 kb on - strand, within CCNA_00144at 156.227 kb on - strand, within CCNA_00144at 156.244 kb on + strand, within CCNA_00144at 156.244 kb on - strand, within CCNA_00144at 156.252 kb on - strand, within CCNA_00144at 156.288 kb on + strand, within CCNA_00144at 156.288 kb on + strand, within CCNA_00144at 156.296 kb on - strand, within CCNA_00144at 156.324 kb on - strand, within CCNA_00144at 156.326 kb on + strand, within CCNA_00144at 156.334 kb on - strand, within CCNA_00144at 156.360 kb on - strand, within CCNA_00144at 156.361 kb on - strand, within CCNA_00144at 156.361 kb on - strand, within CCNA_00144at 156.385 kb on - strand, within CCNA_00144at 156.390 kb on + strand, within CCNA_00144at 156.390 kb on + strand, within CCNA_00144at 156.398 kb on - strand, within CCNA_00144at 156.408 kb on - strand, within CCNA_00144at 156.415 kb on - strand, within CCNA_00144at 156.433 kb on - strand, within CCNA_00144at 156.452 kb on + strand, within CCNA_00144at 156.452 kb on + strand, within CCNA_00144at 156.460 kb on - strand, within CCNA_00144at 156.460 kb on - strand, within CCNA_00144at 156.468 kb on + strand, within CCNA_00144at 156.468 kb on + strand, within CCNA_00144at 156.468 kb on + strand, within CCNA_00144at 156.476 kb on - strand, within CCNA_00144at 156.481 kb on - strand, within CCNA_00144at 156.540 kb on + strand, within CCNA_00144at 156.554 kb on + strand, within CCNA_00144at 156.556 kb on - strand, within CCNA_00144at 156.602 kb on - strand, within CCNA_00144at 156.605 kb on + strand, within CCNA_00144at 156.605 kb on + strand, within CCNA_00144at 156.623 kb on + strand, within CCNA_00144at 156.645 kb on + strand, within CCNA_00144at 156.645 kb on + strand, within CCNA_00144at 156.677 kb on + strand, within CCNA_00144at 156.688 kb on - strand, within CCNA_00144at 156.699 kb on + strand, within CCNA_00144

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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153,933 - CCNA_00141 0.26 +0.9
153,970 + CCNA_00141 0.31 -1.3
153,970 + CCNA_00141 0.31 +0.3
153,975 + CCNA_00141 0.31 -1.5
153,978 - CCNA_00141 0.32 +0.4
153,978 - CCNA_00141 0.32 +1.5
153,978 - CCNA_00141 0.32 -0.2
153,991 + CCNA_00141 0.33 -1.5
154,033 + CCNA_00141 0.39 -0.2
154,041 - CCNA_00141 0.40 +1.6
154,041 - CCNA_00141 0.40 -0.1
154,073 - CCNA_00141 0.44 +1.2
154,073 - CCNA_00141 0.44 -0.4
154,080 - CCNA_00141 0.44 +0.9
154,081 + CCNA_00141 0.44 -2.8
154,099 - CCNA_00141 0.47 -0.4
154,101 + CCNA_00141 0.47 -0.3
154,122 + CCNA_00141 0.50 -1.0
154,163 + CCNA_00141 0.55 -1.3
154,173 + CCNA_00141 0.56 -1.2
154,181 - CCNA_00141 0.57 -0.8
154,211 - CCNA_00141 0.60 +0.6
154,226 + CCNA_00141 0.62 -0.8
154,235 + CCNA_00141 0.63 +0.7
154,243 - CCNA_00141 0.64 +1.1
154,245 + CCNA_00141 0.65 -1.2
154,278 + CCNA_00141 0.69 -0.4
154,286 - CCNA_00141 0.70 +0.9
154,286 - CCNA_00141 0.70 +0.3
154,286 - CCNA_00141 0.70 +2.3
154,331 + CCNA_00141 0.75 -0.5
154,332 - CCNA_00141 0.75 +1.6
154,332 - CCNA_00141 0.75 +2.0
154,332 - CCNA_00141 0.75 +1.2
154,401 - CCNA_00141 0.84 +1.0
154,401 - CCNA_00141 0.84 +1.2
154,442 + CCNA_00141 0.89 -0.5
154,442 + CCNA_00141 0.89 +0.8
154,442 + CCNA_00141 0.89 -0.7
154,442 + CCNA_00141 0.89 +0.3
154,442 + CCNA_00141 0.89 +2.1
154,442 + CCNA_00141 0.89 -0.4
154,442 + CCNA_00141 0.89 -0.6
154,442 + CCNA_00141 0.89 +0.1
154,442 + CCNA_00141 0.89 +0.6
154,442 + CCNA_00141 0.89 +0.2
154,442 + CCNA_00141 0.89 -0.8
154,442 + CCNA_00141 0.89 -1.4
154,447 + CCNA_00141 0.89 -1.6
154,447 + CCNA_00141 0.89 -0.0
154,450 - CCNA_00141 0.90 -0.6
154,450 - CCNA_00141 0.90 +1.8
154,450 - CCNA_00141 0.90 -0.9
154,450 - CCNA_00141 0.90 +0.8
154,450 - CCNA_00141 0.90 +1.3
154,455 - -1.5
154,455 - +1.0
154,455 - +0.0
154,455 - +0.3
154,457 + -0.6
154,465 - +0.2
154,465 - +0.1
154,496 + +2.0
154,511 + +1.2
154,521 + -2.2
154,533 + -1.1
154,587 + CCNA_00142 0.14 -0.3
154,619 + CCNA_00142 0.22 -3.1
154,624 + CCNA_00142 0.24 -0.6
154,632 - CCNA_00142 0.26 +1.1
154,632 - CCNA_00142 0.26 +1.1
154,684 + CCNA_00142 0.39 +2.0
154,684 + CCNA_00142 0.39 +1.4
154,692 - CCNA_00142 0.42 +3.0
154,692 - CCNA_00142 0.42 +4.2
154,692 - CCNA_00142 0.42 +2.8
154,692 - CCNA_00142 0.42 +3.1
154,692 - CCNA_00142 0.42 +2.2
154,692 - CCNA_00142 0.42 +2.5
154,735 - CCNA_00142 0.53 +0.8
154,747 - CCNA_00142 0.56 +2.5
154,747 - CCNA_00142 0.56 +1.1
154,759 + CCNA_00142 0.59 +0.4
154,817 + CCNA_00142 0.75 -0.6
154,867 - CCNA_00142 0.88 +0.3
154,894 + -0.6
154,902 - +2.1
154,915 + -1.8
154,953 - -1.9
155,002 - CCNA_00143 0.10 +1.2
155,014 + CCNA_00143 0.12 -0.9
155,022 - CCNA_00143 0.13 +0.6
155,031 + CCNA_00143 0.14 +0.6
155,156 - CCNA_00143 0.28 -0.2
155,186 - CCNA_00143 0.31 -1.9
155,196 - CCNA_00143 0.33 -0.4
155,308 + CCNA_00143 0.45 -0.4
155,380 + CCNA_00143 0.54 -1.4
155,387 - CCNA_00143 0.54 -1.5
155,424 + CCNA_00143 0.59 -0.1
155,465 - CCNA_00143 0.63 -1.1
155,465 - CCNA_00143 0.63 -1.5
155,486 + CCNA_00143 0.66 +1.0
155,503 - CCNA_00143 0.68 -0.6
155,508 - CCNA_00143 0.68 +1.4
155,566 - CCNA_00143 0.75 -0.7
155,599 - CCNA_00143 0.79 +0.6
155,685 + CCNA_00143 0.89 +0.8
155,693 - CCNA_00143 0.89 -0.7
155,757 + -1.8
155,760 - -0.6
155,760 - -0.4
155,785 - +0.9
155,814 - -0.1
155,863 - +1.0
155,874 + -1.4
155,874 + -1.5
155,882 - +1.2
155,882 - +1.2
155,910 + +1.6
155,918 - -0.2
155,918 - +0.6
155,918 - -0.4
155,921 + +1.4
155,929 + +0.2
155,929 + +0.5
155,944 + CCNA_00144 0.11 -1.3
155,944 + CCNA_00144 0.11 -2.1
155,944 + CCNA_00144 0.11 -0.4
155,951 + CCNA_00144 0.11 -0.5
155,952 - CCNA_00144 0.12 +1.4
155,959 - CCNA_00144 0.12 -0.1
155,968 + CCNA_00144 0.13 -1.4
155,968 + CCNA_00144 0.13 -1.0
155,968 + CCNA_00144 0.13 -0.0
155,976 - CCNA_00144 0.14 -1.1
155,976 - CCNA_00144 0.14 -0.3
155,976 - CCNA_00144 0.14 -1.4
155,976 - CCNA_00144 0.14 +1.0
155,976 - CCNA_00144 0.14 -0.7
155,976 - CCNA_00144 0.14 +1.8
155,999 + CCNA_00144 0.16 -0.6
156,000 + CCNA_00144 0.16 -1.9
156,008 - CCNA_00144 0.16 +0.6
156,008 - CCNA_00144 0.16 +0.7
156,014 + CCNA_00144 0.17 -0.7
156,014 + CCNA_00144 0.17 +0.0
156,014 + CCNA_00144 0.17 +0.5
156,014 + CCNA_00144 0.17 -1.8
156,014 + CCNA_00144 0.17 +0.7
156,022 - CCNA_00144 0.18 +3.2
156,022 - CCNA_00144 0.18 +1.8
156,022 - CCNA_00144 0.18 -0.4
156,022 - CCNA_00144 0.18 +0.3
156,022 - CCNA_00144 0.18 +1.0
156,022 - CCNA_00144 0.18 +1.2
156,089 - CCNA_00144 0.23 -0.2
156,092 - CCNA_00144 0.24 -1.1
156,097 - CCNA_00144 0.24 +1.1
156,154 - CCNA_00144 0.29 -0.3
156,206 - CCNA_00144 0.34 -0.7
156,211 - CCNA_00144 0.34 +0.5
156,227 - CCNA_00144 0.35 -0.4
156,227 - CCNA_00144 0.35 -0.5
156,244 + CCNA_00144 0.37 -1.0
156,244 - CCNA_00144 0.37 +0.7
156,252 - CCNA_00144 0.37 +0.7
156,288 + CCNA_00144 0.41 +2.0
156,288 + CCNA_00144 0.41 -0.3
156,296 - CCNA_00144 0.41 +1.3
156,324 - CCNA_00144 0.44 +1.2
156,326 + CCNA_00144 0.44 +0.6
156,334 - CCNA_00144 0.45 +0.4
156,360 - CCNA_00144 0.47 -0.1
156,361 - CCNA_00144 0.47 +0.4
156,361 - CCNA_00144 0.47 -0.5
156,385 - CCNA_00144 0.49 -0.3
156,390 + CCNA_00144 0.49 -2.3
156,390 + CCNA_00144 0.49 +1.3
156,398 - CCNA_00144 0.50 +3.4
156,408 - CCNA_00144 0.51 +2.2
156,415 - CCNA_00144 0.52 +0.1
156,433 - CCNA_00144 0.53 -0.3
156,452 + CCNA_00144 0.55 -1.1
156,452 + CCNA_00144 0.55 -0.8
156,460 - CCNA_00144 0.55 -0.6
156,460 - CCNA_00144 0.55 +0.6
156,468 + CCNA_00144 0.56 +0.2
156,468 + CCNA_00144 0.56 +0.4
156,468 + CCNA_00144 0.56 -0.0
156,476 - CCNA_00144 0.57 +0.2
156,481 - CCNA_00144 0.57 +1.0
156,540 + CCNA_00144 0.62 -0.2
156,554 + CCNA_00144 0.64 -0.2
156,556 - CCNA_00144 0.64 -0.7
156,602 - CCNA_00144 0.68 +1.0
156,605 + CCNA_00144 0.68 +1.3
156,605 + CCNA_00144 0.68 -1.4
156,623 + CCNA_00144 0.70 +1.1
156,645 + CCNA_00144 0.72 -1.2
156,645 + CCNA_00144 0.72 +1.5
156,677 + CCNA_00144 0.74 -0.4
156,688 - CCNA_00144 0.75 -1.3
156,699 + CCNA_00144 0.76 -0.4

Or see this region's nucleotide sequence