Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00112

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00110 and CCNA_00111 are separated by 76 nucleotidesCCNA_00111 and CCNA_00112 are separated by 4 nucleotidesCCNA_00112 and CCNA_00113 are separated by 79 nucleotidesCCNA_00113 and CCNA_00114 are separated by 2 nucleotides CCNA_00110: CCNA_00110 - DNA-binding protein, at 120,169 to 120,675 _00110 CCNA_00111: CCNA_00111 - hypothetical protein, at 120,752 to 121,498 _00111 CCNA_00112: CCNA_00112 - glyoxalase family protein, at 121,503 to 121,892 _00112 CCNA_00113: CCNA_00113 - hypothetical protein, at 121,972 to 122,544 _00113 CCNA_00114: CCNA_00114 - MarR/EmrR-family transcriptional regulator, at 122,547 to 122,852 _00114 Position (kb) 121 122Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 120.503 kb on + strand, within CCNA_00110at 120.508 kb on + strand, within CCNA_00110at 120.511 kb on - strand, within CCNA_00110at 120.511 kb on - strand, within CCNA_00110at 120.516 kb on - strand, within CCNA_00110at 120.523 kb on - strand, within CCNA_00110at 120.537 kb on + strand, within CCNA_00110at 120.543 kb on - strand, within CCNA_00110at 120.545 kb on - strand, within CCNA_00110at 120.566 kb on + strand, within CCNA_00110at 120.566 kb on + strand, within CCNA_00110at 120.566 kb on + strand, within CCNA_00110at 120.566 kb on + strand, within CCNA_00110at 120.574 kb on + strand, within CCNA_00110at 120.574 kb on - strand, within CCNA_00110at 120.610 kb on + strand, within CCNA_00110at 120.610 kb on + strand, within CCNA_00110at 120.618 kb on - strand, within CCNA_00110at 120.618 kb on - strand, within CCNA_00110at 120.618 kb on - strand, within CCNA_00110at 120.629 kb on + strandat 120.657 kb on + strandat 120.665 kb on - strandat 120.670 kb on - strandat 120.682 kb on + strandat 120.682 kb on + strandat 120.682 kb on + strandat 120.690 kb on - strandat 120.690 kb on - strandat 120.692 kb on + strandat 120.692 kb on + strandat 120.692 kb on + strandat 120.692 kb on + strandat 120.700 kb on - strandat 120.700 kb on - strandat 120.707 kb on + strandat 120.715 kb on - strandat 120.715 kb on - strandat 120.719 kb on + strandat 120.755 kb on + strandat 120.763 kb on + strandat 120.787 kb on + strandat 120.844 kb on - strand, within CCNA_00111at 120.849 kb on - strand, within CCNA_00111at 120.863 kb on + strand, within CCNA_00111at 120.870 kb on - strand, within CCNA_00111at 120.874 kb on + strand, within CCNA_00111at 120.887 kb on + strand, within CCNA_00111at 120.899 kb on - strand, within CCNA_00111at 120.949 kb on - strand, within CCNA_00111at 120.973 kb on + strand, within CCNA_00111at 121.001 kb on + strand, within CCNA_00111at 121.020 kb on + strand, within CCNA_00111at 121.028 kb on - strand, within CCNA_00111at 121.028 kb on - strand, within CCNA_00111at 121.040 kb on + strand, within CCNA_00111at 121.048 kb on + strand, within CCNA_00111at 121.048 kb on - strand, within CCNA_00111at 121.058 kb on + strand, within CCNA_00111at 121.058 kb on + strand, within CCNA_00111at 121.066 kb on - strand, within CCNA_00111at 121.066 kb on - strand, within CCNA_00111at 121.107 kb on - strand, within CCNA_00111at 121.210 kb on + strand, within CCNA_00111at 121.211 kb on + strand, within CCNA_00111at 121.237 kb on + strand, within CCNA_00111at 121.238 kb on + strand, within CCNA_00111at 121.243 kb on + strand, within CCNA_00111at 121.288 kb on + strand, within CCNA_00111at 121.288 kb on + strand, within CCNA_00111at 121.301 kb on - strand, within CCNA_00111at 121.318 kb on + strand, within CCNA_00111at 121.318 kb on + strand, within CCNA_00111at 121.326 kb on - strand, within CCNA_00111at 121.357 kb on + strand, within CCNA_00111at 121.368 kb on + strand, within CCNA_00111at 121.387 kb on + strand, within CCNA_00111at 121.412 kb on + strand, within CCNA_00111at 121.412 kb on + strand, within CCNA_00111at 121.420 kb on - strand, within CCNA_00111at 121.429 kb on + strandat 121.471 kb on + strandat 121.479 kb on - strandat 121.487 kb on + strandat 121.493 kb on + strandat 121.494 kb on - strandat 121.522 kb on - strandat 121.557 kb on + strand, within CCNA_00112at 121.557 kb on - strand, within CCNA_00112at 121.558 kb on - strand, within CCNA_00112at 121.558 kb on - strand, within CCNA_00112at 121.582 kb on - strand, within CCNA_00112at 121.601 kb on + strand, within CCNA_00112at 121.667 kb on + strand, within CCNA_00112at 121.675 kb on - strand, within CCNA_00112at 121.689 kb on + strand, within CCNA_00112at 121.735 kb on + strand, within CCNA_00112at 121.738 kb on - strand, within CCNA_00112at 121.743 kb on - strandat 121.745 kb on + strand, within CCNA_00112at 121.745 kb on + strand, within CCNA_00112at 121.777 kb on - strand, within CCNA_00112at 121.777 kb on - strand, within CCNA_00112at 121.817 kb on + strand, within CCNA_00112at 121.850 kb on + strand, within CCNA_00112at 121.879 kb on + strandat 121.887 kb on - strandat 121.953 kb on - strandat 121.954 kb on + strandat 121.979 kb on + strandat 122.017 kb on + strandat 122.019 kb on + strandat 122.027 kb on - strandat 122.103 kb on + strand, within CCNA_00113at 122.103 kb on + strand, within CCNA_00113at 122.106 kb on - strand, within CCNA_00113at 122.111 kb on - strand, within CCNA_00113at 122.132 kb on + strand, within CCNA_00113at 122.171 kb on + strand, within CCNA_00113at 122.247 kb on + strand, within CCNA_00113at 122.248 kb on + strand, within CCNA_00113at 122.255 kb on - strand, within CCNA_00113at 122.262 kb on - strand, within CCNA_00113at 122.280 kb on + strand, within CCNA_00113at 122.292 kb on - strandat 122.373 kb on + strand, within CCNA_00113at 122.373 kb on + strand, within CCNA_00113at 122.373 kb on + strand, within CCNA_00113at 122.373 kb on + strand, within CCNA_00113at 122.373 kb on + strand, within CCNA_00113at 122.391 kb on + strand, within CCNA_00113at 122.399 kb on - strand, within CCNA_00113at 122.399 kb on - strand, within CCNA_00113at 122.399 kb on - strand, within CCNA_00113at 122.401 kb on + strand, within CCNA_00113at 122.406 kb on + strand, within CCNA_00113at 122.425 kb on + strand, within CCNA_00113at 122.433 kb on - strand, within CCNA_00113at 122.438 kb on + strand, within CCNA_00113at 122.446 kb on - strand, within CCNA_00113at 122.514 kb on + strandat 122.519 kb on - strandat 122.532 kb on - strandat 122.596 kb on + strand, within CCNA_00114at 122.608 kb on + strand, within CCNA_00114at 122.608 kb on + strand, within CCNA_00114at 122.673 kb on + strand, within CCNA_00114at 122.759 kb on + strand, within CCNA_00114at 122.759 kb on + strand, within CCNA_00114at 122.777 kb on + strand, within CCNA_00114at 122.779 kb on + strand, within CCNA_00114at 122.785 kb on - strand, within CCNA_00114at 122.787 kb on + strand, within CCNA_00114at 122.794 kb on - strand, within CCNA_00114at 122.807 kb on - strand, within CCNA_00114at 122.830 kb on - strandat 122.881 kb on + strandat 122.881 kb on + strandat 122.882 kb on + strandat 122.882 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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120,503 + CCNA_00110 0.66 -1.5
120,508 + CCNA_00110 0.67 +1.6
120,511 - CCNA_00110 0.67 -0.1
120,511 - CCNA_00110 0.67 +1.4
120,516 - CCNA_00110 0.68 -0.5
120,523 - CCNA_00110 0.70 -1.6
120,537 + CCNA_00110 0.73 +0.4
120,543 - CCNA_00110 0.74 +0.6
120,545 - CCNA_00110 0.74 -0.8
120,566 + CCNA_00110 0.78 +0.6
120,566 + CCNA_00110 0.78 -0.8
120,566 + CCNA_00110 0.78 -0.4
120,566 + CCNA_00110 0.78 -0.9
120,574 + CCNA_00110 0.80 +2.6
120,574 - CCNA_00110 0.80 -0.3
120,610 + CCNA_00110 0.87 +0.3
120,610 + CCNA_00110 0.87 +0.4
120,618 - CCNA_00110 0.89 +0.3
120,618 - CCNA_00110 0.89 -0.9
120,618 - CCNA_00110 0.89 -0.6
120,629 + -1.7
120,657 + +2.0
120,665 - +0.3
120,670 - -1.8
120,682 + -1.0
120,682 + -0.4
120,682 + -1.8
120,690 - +1.0
120,690 - +0.4
120,692 + +1.7
120,692 + +1.2
120,692 + +0.8
120,692 + -0.2
120,700 - -0.5
120,700 - -0.8
120,707 + -2.0
120,715 - -0.8
120,715 - -0.9
120,719 + -0.8
120,755 + +0.4
120,763 + +1.2
120,787 + +1.2
120,844 - CCNA_00111 0.12 -0.9
120,849 - CCNA_00111 0.13 -2.4
120,863 + CCNA_00111 0.15 +0.5
120,870 - CCNA_00111 0.16 -1.2
120,874 + CCNA_00111 0.16 -0.8
120,887 + CCNA_00111 0.18 -0.1
120,899 - CCNA_00111 0.20 -0.3
120,949 - CCNA_00111 0.26 -0.1
120,973 + CCNA_00111 0.30 -0.6
121,001 + CCNA_00111 0.33 -1.4
121,020 + CCNA_00111 0.36 +1.9
121,028 - CCNA_00111 0.37 -0.7
121,028 - CCNA_00111 0.37 +0.5
121,040 + CCNA_00111 0.39 +0.2
121,048 + CCNA_00111 0.40 -0.8
121,048 - CCNA_00111 0.40 +1.6
121,058 + CCNA_00111 0.41 +0.6
121,058 + CCNA_00111 0.41 +0.2
121,066 - CCNA_00111 0.42 -1.0
121,066 - CCNA_00111 0.42 -0.7
121,107 - CCNA_00111 0.48 +0.1
121,210 + CCNA_00111 0.61 +0.7
121,211 + CCNA_00111 0.61 +0.4
121,237 + CCNA_00111 0.65 +1.1
121,238 + CCNA_00111 0.65 -0.2
121,243 + CCNA_00111 0.66 -1.7
121,288 + CCNA_00111 0.72 -0.7
121,288 + CCNA_00111 0.72 +0.6
121,301 - CCNA_00111 0.73 -0.8
121,318 + CCNA_00111 0.76 +0.4
121,318 + CCNA_00111 0.76 -0.2
121,326 - CCNA_00111 0.77 +1.1
121,357 + CCNA_00111 0.81 +0.8
121,368 + CCNA_00111 0.82 -0.8
121,387 + CCNA_00111 0.85 +0.2
121,412 + CCNA_00111 0.88 +0.4
121,412 + CCNA_00111 0.88 +0.1
121,420 - CCNA_00111 0.89 -0.6
121,429 + +0.5
121,471 + +0.1
121,479 - +0.5
121,487 + +1.0
121,493 + +1.2
121,494 - -0.4
121,522 - +0.6
121,557 + CCNA_00112 0.14 +0.5
121,557 - CCNA_00112 0.14 -1.0
121,558 - CCNA_00112 0.14 -1.7
121,558 - CCNA_00112 0.14 +0.3
121,582 - CCNA_00112 0.20 -1.2
121,601 + CCNA_00112 0.25 -1.1
121,667 + CCNA_00112 0.42 -0.9
121,675 - CCNA_00112 0.44 -1.3
121,689 + CCNA_00112 0.48 -0.5
121,735 + CCNA_00112 0.59 -0.3
121,738 - CCNA_00112 0.60 -0.0
121,743 - +1.6
121,745 + CCNA_00112 0.62 -2.4
121,745 + CCNA_00112 0.62 -0.2
121,777 - CCNA_00112 0.70 +0.5
121,777 - CCNA_00112 0.70 -0.5
121,817 + CCNA_00112 0.81 -1.1
121,850 + CCNA_00112 0.89 -0.7
121,879 + +0.7
121,887 - +0.1
121,953 - -1.3
121,954 + +0.1
121,979 + -0.8
122,017 + +1.0
122,019 + -2.2
122,027 - -1.4
122,103 + CCNA_00113 0.23 -2.2
122,103 + CCNA_00113 0.23 -0.0
122,106 - CCNA_00113 0.23 -1.5
122,111 - CCNA_00113 0.24 -0.9
122,132 + CCNA_00113 0.28 +1.3
122,171 + CCNA_00113 0.35 +0.5
122,247 + CCNA_00113 0.48 -1.0
122,248 + CCNA_00113 0.48 +0.4
122,255 - CCNA_00113 0.49 -0.9
122,262 - CCNA_00113 0.51 +2.2
122,280 + CCNA_00113 0.54 -0.4
122,292 - +1.2
122,373 + CCNA_00113 0.70 +0.6
122,373 + CCNA_00113 0.70 +1.0
122,373 + CCNA_00113 0.70 +0.3
122,373 + CCNA_00113 0.70 -1.1
122,373 + CCNA_00113 0.70 +0.4
122,391 + CCNA_00113 0.73 -1.1
122,399 - CCNA_00113 0.75 -0.7
122,399 - CCNA_00113 0.75 -0.6
122,399 - CCNA_00113 0.75 +0.6
122,401 + CCNA_00113 0.75 +3.2
122,406 + CCNA_00113 0.76 -1.5
122,425 + CCNA_00113 0.79 -1.1
122,433 - CCNA_00113 0.80 -0.9
122,438 + CCNA_00113 0.81 -1.7
122,446 - CCNA_00113 0.83 +0.5
122,514 + +0.3
122,519 - -0.7
122,532 - -0.7
122,596 + CCNA_00114 0.16 +1.8
122,608 + CCNA_00114 0.20 +2.6
122,608 + CCNA_00114 0.20 +3.0
122,673 + CCNA_00114 0.41 +1.5
122,759 + CCNA_00114 0.69 +2.6
122,759 + CCNA_00114 0.69 +2.9
122,777 + CCNA_00114 0.75 +2.5
122,779 + CCNA_00114 0.76 +1.7
122,785 - CCNA_00114 0.78 +0.8
122,787 + CCNA_00114 0.78 +3.0
122,794 - CCNA_00114 0.81 -0.9
122,807 - CCNA_00114 0.85 -0.5
122,830 - -0.4
122,881 + +1.0
122,881 + +0.2
122,882 + +1.0
122,882 + +4.0

Or see this region's nucleotide sequence