Experiment: PYE with nitrite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00092 and CCNA_00093 are separated by 98 nucleotides CCNA_00093 and CCNA_00094 are separated by 72 nucleotides CCNA_00094 and CCNA_00095 are separated by 103 nucleotides
CCNA_00092: CCNA_00092 - short chain dehydrogenase, at 104,039 to 104,929
_00092
CCNA_00093: CCNA_00093 - hypothetical protein, at 105,028 to 105,237
_00093
CCNA_00094: CCNA_00094 - WecG/TagA-family glycosyltransferase HfsJ, at 105,310 to 106,230
_00094
CCNA_00095: CCNA_00095 - quinone oxidoreductase, at 106,334 to 107,332
_00095
Position (kb) 105
106
107 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 104.374 kb on + strand, within CCNA_00092 at 104.382 kb on - strand, within CCNA_00092 at 104.388 kb on + strand, within CCNA_00092 at 104.409 kb on + strand, within CCNA_00092 at 104.466 kb on + strand, within CCNA_00092 at 104.466 kb on + strand, within CCNA_00092 at 104.474 kb on - strand, within CCNA_00092 at 104.479 kb on + strand, within CCNA_00092 at 104.551 kb on + strand, within CCNA_00092 at 104.594 kb on - strand, within CCNA_00092 at 104.604 kb on + strand, within CCNA_00092 at 104.604 kb on + strand, within CCNA_00092 at 104.612 kb on - strand, within CCNA_00092 at 104.629 kb on + strand, within CCNA_00092 at 104.637 kb on - strand, within CCNA_00092 at 104.669 kb on + strand, within CCNA_00092 at 104.710 kb on + strand at 104.710 kb on + strand, within CCNA_00092 at 104.711 kb on + strand, within CCNA_00092 at 104.718 kb on + strand, within CCNA_00092 at 104.720 kb on - strand, within CCNA_00092 at 104.720 kb on - strand, within CCNA_00092 at 104.726 kb on - strand, within CCNA_00092 at 104.726 kb on - strand, within CCNA_00092 at 104.745 kb on + strand at 104.745 kb on + strand, within CCNA_00092 at 104.763 kb on - strand, within CCNA_00092 at 104.770 kb on + strand, within CCNA_00092 at 104.770 kb on + strand, within CCNA_00092 at 104.778 kb on - strand, within CCNA_00092 at 104.785 kb on + strand, within CCNA_00092 at 104.785 kb on + strand, within CCNA_00092 at 104.793 kb on - strand, within CCNA_00092 at 104.823 kb on - strand, within CCNA_00092 at 104.832 kb on + strand, within CCNA_00092 at 104.854 kb on + strand at 104.862 kb on - strand at 104.893 kb on - strand at 104.920 kb on - strand at 104.944 kb on + strand at 104.946 kb on + strand at 105.001 kb on - strand at 105.020 kb on - strand at 105.048 kb on - strand at 105.090 kb on + strand, within CCNA_00093 at 105.106 kb on + strand, within CCNA_00093 at 105.117 kb on + strand, within CCNA_00093 at 105.125 kb on - strand, within CCNA_00093 at 105.131 kb on + strand, within CCNA_00093 at 105.131 kb on + strand, within CCNA_00093 at 105.131 kb on + strand, within CCNA_00093 at 105.131 kb on + strand, within CCNA_00093 at 105.136 kb on + strand, within CCNA_00093 at 105.136 kb on + strand, within CCNA_00093 at 105.139 kb on - strand, within CCNA_00093 at 105.139 kb on - strand, within CCNA_00093 at 105.141 kb on + strand, within CCNA_00093 at 105.141 kb on + strand, within CCNA_00093 at 105.144 kb on - strand, within CCNA_00093 at 105.144 kb on - strand, within CCNA_00093 at 105.149 kb on - strand, within CCNA_00093 at 105.156 kb on + strand, within CCNA_00093 at 105.159 kb on - strand, within CCNA_00093 at 105.164 kb on - strand, within CCNA_00093 at 105.164 kb on - strand, within CCNA_00093 at 105.189 kb on - strand, within CCNA_00093 at 105.205 kb on - strand, within CCNA_00093 at 105.242 kb on + strand at 105.250 kb on - strand at 105.266 kb on + strand at 105.297 kb on - strand at 105.320 kb on + strand at 105.332 kb on + strand at 105.337 kb on + strand at 105.345 kb on - strand at 105.389 kb on + strand at 105.389 kb on + strand at 105.389 kb on + strand at 105.389 kb on + strand at 105.389 kb on + strand at 105.397 kb on - strand at 105.397 kb on - strand at 105.397 kb on - strand at 105.397 kb on - strand at 105.397 kb on - strand at 105.397 kb on - strand at 105.397 kb on - strand at 105.399 kb on - strand at 105.433 kb on - strand, within CCNA_00094 at 105.502 kb on + strand at 105.511 kb on - strand, within CCNA_00094 at 105.524 kb on - strand, within CCNA_00094 at 105.524 kb on - strand, within CCNA_00094 at 105.524 kb on - strand, within CCNA_00094 at 105.526 kb on + strand, within CCNA_00094 at 105.546 kb on - strand, within CCNA_00094 at 105.604 kb on - strand, within CCNA_00094 at 105.610 kb on - strand, within CCNA_00094 at 105.628 kb on - strand, within CCNA_00094 at 105.642 kb on + strand, within CCNA_00094 at 105.642 kb on + strand, within CCNA_00094 at 105.660 kb on - strand, within CCNA_00094 at 105.665 kb on - strand, within CCNA_00094 at 105.672 kb on - strand, within CCNA_00094 at 105.703 kb on + strand, within CCNA_00094 at 105.703 kb on + strand, within CCNA_00094 at 105.723 kb on - strand, within CCNA_00094 at 105.723 kb on - strand, within CCNA_00094 at 105.746 kb on + strand, within CCNA_00094 at 105.769 kb on + strand, within CCNA_00094 at 105.769 kb on + strand, within CCNA_00094 at 105.777 kb on - strand, within CCNA_00094 at 105.777 kb on - strand, within CCNA_00094 at 105.777 kb on - strand, within CCNA_00094 at 105.777 kb on - strand, within CCNA_00094 at 105.804 kb on + strand, within CCNA_00094 at 105.833 kb on + strand, within CCNA_00094 at 105.850 kb on + strand, within CCNA_00094 at 105.855 kb on + strand, within CCNA_00094 at 105.858 kb on - strand, within CCNA_00094 at 105.858 kb on - strand, within CCNA_00094 at 105.858 kb on - strand, within CCNA_00094 at 105.877 kb on + strand, within CCNA_00094 at 105.882 kb on + strand, within CCNA_00094 at 105.884 kb on - strand, within CCNA_00094 at 105.885 kb on - strand, within CCNA_00094 at 105.887 kb on + strand, within CCNA_00094 at 105.964 kb on - strand, within CCNA_00094 at 105.977 kb on + strand, within CCNA_00094 at 105.982 kb on + strand, within CCNA_00094 at 105.985 kb on - strand, within CCNA_00094 at 106.009 kb on + strand, within CCNA_00094 at 106.014 kb on + strand, within CCNA_00094 at 106.014 kb on + strand, within CCNA_00094 at 106.014 kb on + strand, within CCNA_00094 at 106.014 kb on + strand, within CCNA_00094 at 106.022 kb on - strand, within CCNA_00094 at 106.030 kb on - strand, within CCNA_00094 at 106.084 kb on + strand, within CCNA_00094 at 106.092 kb on - strand, within CCNA_00094 at 106.100 kb on - strand, within CCNA_00094 at 106.110 kb on + strand, within CCNA_00094 at 106.118 kb on + strand, within CCNA_00094 at 106.126 kb on - strand, within CCNA_00094 at 106.141 kb on - strand at 106.143 kb on + strand at 106.147 kb on - strand at 106.151 kb on - strand at 106.151 kb on - strand at 106.151 kb on - strand at 106.151 kb on - strand at 106.177 kb on - strand at 106.193 kb on + strand at 106.205 kb on - strand at 106.212 kb on + strand at 106.215 kb on - strand at 106.238 kb on - strand at 106.240 kb on + strand at 106.240 kb on + strand at 106.248 kb on + strand at 106.248 kb on - strand at 106.250 kb on - strand at 106.340 kb on - strand at 106.361 kb on - strand at 106.361 kb on - strand at 106.418 kb on + strand at 106.452 kb on + strand, within CCNA_00095 at 106.460 kb on - strand, within CCNA_00095 at 106.460 kb on - strand, within CCNA_00095 at 106.460 kb on - strand, within CCNA_00095 at 106.471 kb on + strand, within CCNA_00095 at 106.471 kb on + strand, within CCNA_00095 at 106.492 kb on + strand, within CCNA_00095 at 106.518 kb on + strand, within CCNA_00095 at 106.518 kb on + strand, within CCNA_00095 at 106.518 kb on + strand, within CCNA_00095 at 106.518 kb on + strand, within CCNA_00095 at 106.518 kb on + strand, within CCNA_00095 at 106.518 kb on + strand, within CCNA_00095 at 106.526 kb on - strand, within CCNA_00095 at 106.526 kb on - strand, within CCNA_00095 at 106.526 kb on - strand, within CCNA_00095 at 106.526 kb on - strand, within CCNA_00095 at 106.526 kb on - strand, within CCNA_00095 at 106.526 kb on - strand, within CCNA_00095 at 106.526 kb on - strand, within CCNA_00095 at 106.555 kb on - strand, within CCNA_00095 at 106.596 kb on - strand, within CCNA_00095 at 106.616 kb on - strand, within CCNA_00095 at 106.642 kb on - strand, within CCNA_00095 at 106.678 kb on + strand, within CCNA_00095 at 106.678 kb on + strand, within CCNA_00095 at 106.686 kb on - strand, within CCNA_00095 at 106.686 kb on - strand, within CCNA_00095 at 106.704 kb on + strand, within CCNA_00095 at 106.704 kb on + strand, within CCNA_00095 at 106.712 kb on - strand, within CCNA_00095 at 106.712 kb on - strand, within CCNA_00095 at 106.735 kb on - strand, within CCNA_00095 at 106.842 kb on - strand, within CCNA_00095 at 106.848 kb on + strand, within CCNA_00095 at 106.850 kb on - strand, within CCNA_00095 at 106.856 kb on - strand, within CCNA_00095 at 106.856 kb on - strand, within CCNA_00095 at 106.957 kb on - strand, within CCNA_00095 at 106.957 kb on - strand, within CCNA_00095 at 106.964 kb on + strand, within CCNA_00095 at 106.969 kb on + strand, within CCNA_00095 at 106.972 kb on - strand, within CCNA_00095 at 106.972 kb on - strand, within CCNA_00095 at 106.977 kb on - strand, within CCNA_00095 at 107.049 kb on - strand, within CCNA_00095 at 107.100 kb on - strand, within CCNA_00095 at 107.121 kb on + strand, within CCNA_00095 at 107.134 kb on - strand, within CCNA_00095 at 107.145 kb on - strand, within CCNA_00095 at 107.169 kb on + strand, within CCNA_00095 at 107.169 kb on + strand, within CCNA_00095 at 107.177 kb on - strand, within CCNA_00095 at 107.177 kb on - strand, within CCNA_00095 at 107.213 kb on + strand, within CCNA_00095
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM remove 104,374 + CCNA_00092 0.38 +1.8 104,382 - CCNA_00092 0.38 -0.3 104,388 + CCNA_00092 0.39 -0.5 104,409 + CCNA_00092 0.42 +0.8 104,466 + CCNA_00092 0.48 -0.0 104,466 + CCNA_00092 0.48 -0.6 104,474 - CCNA_00092 0.49 -0.4 104,479 + CCNA_00092 0.49 +0.2 104,551 + CCNA_00092 0.57 -0.9 104,594 - CCNA_00092 0.62 -1.2 104,604 + CCNA_00092 0.63 +0.6 104,604 + CCNA_00092 0.63 -1.0 104,612 - CCNA_00092 0.64 +2.4 104,629 + CCNA_00092 0.66 +0.7 104,637 - CCNA_00092 0.67 -1.6 104,669 + CCNA_00092 0.71 -0.6 104,710 + +2.0 104,710 + CCNA_00092 0.75 -0.9 104,711 + CCNA_00092 0.75 -1.5 104,718 + CCNA_00092 0.76 +0.2 104,720 - CCNA_00092 0.76 -1.5 104,720 - CCNA_00092 0.76 +0.8 104,726 - CCNA_00092 0.77 -1.3 104,726 - CCNA_00092 0.77 -0.2 104,745 + +3.0 104,745 + CCNA_00092 0.79 -1.0 104,763 - CCNA_00092 0.81 +0.1 104,770 + CCNA_00092 0.82 +0.4 104,770 + CCNA_00092 0.82 -0.8 104,778 - CCNA_00092 0.83 +0.3 104,785 + CCNA_00092 0.84 -2.2 104,785 + CCNA_00092 0.84 +0.8 104,793 - CCNA_00092 0.85 -2.4 104,823 - CCNA_00092 0.88 -0.6 104,832 + CCNA_00092 0.89 -1.6 104,854 + -0.3 104,862 - -0.0 104,893 - -0.6 104,920 - +0.7 104,944 + -0.1 104,946 + +0.2 105,001 - +3.5 105,020 - +2.8 105,048 - +2.1 105,090 + CCNA_00093 0.30 +1.0 105,106 + CCNA_00093 0.37 -0.1 105,117 + CCNA_00093 0.42 +0.4 105,125 - CCNA_00093 0.46 +1.4 105,131 + CCNA_00093 0.49 -0.6 105,131 + CCNA_00093 0.49 -1.3 105,131 + CCNA_00093 0.49 -1.5 105,131 + CCNA_00093 0.49 +0.8 105,136 + CCNA_00093 0.51 -1.5 105,136 + CCNA_00093 0.51 -0.3 105,139 - CCNA_00093 0.53 -0.4 105,139 - CCNA_00093 0.53 +1.4 105,141 + CCNA_00093 0.54 -1.5 105,141 + CCNA_00093 0.54 +0.3 105,144 - CCNA_00093 0.55 +1.2 105,144 - CCNA_00093 0.55 -1.0 105,149 - CCNA_00093 0.58 +1.0 105,156 + CCNA_00093 0.61 -0.2 105,159 - CCNA_00093 0.62 +1.8 105,164 - CCNA_00093 0.65 -0.2 105,164 - CCNA_00093 0.65 -1.1 105,189 - CCNA_00093 0.77 +1.2 105,205 - CCNA_00093 0.84 +0.5 105,242 + +0.8 105,250 - -1.5 105,266 + -1.4 105,297 - +2.2 105,320 + -0.5 105,332 + +1.4 105,337 + -0.7 105,345 - +1.0 105,389 + -0.6 105,389 + +1.0 105,389 + -1.7 105,389 + +1.4 105,389 + -0.2 105,397 - +0.5 105,397 - +2.4 105,397 - +1.5 105,397 - +2.2 105,397 - +0.9 105,397 - +1.7 105,397 - -0.4 105,399 - +1.7 105,433 - CCNA_00094 0.13 +1.3 105,502 + +1.6 105,511 - CCNA_00094 0.22 +2.2 105,524 - CCNA_00094 0.23 -0.4 105,524 - CCNA_00094 0.23 +1.4 105,524 - CCNA_00094 0.23 +2.2 105,526 + CCNA_00094 0.23 -0.9 105,546 - CCNA_00094 0.26 +1.0 105,604 - CCNA_00094 0.32 +1.6 105,610 - CCNA_00094 0.33 -0.6 105,628 - CCNA_00094 0.35 +1.5 105,642 + CCNA_00094 0.36 -1.1 105,642 + CCNA_00094 0.36 -0.0 105,660 - CCNA_00094 0.38 +1.6 105,665 - CCNA_00094 0.39 +1.7 105,672 - CCNA_00094 0.39 +1.8 105,703 + CCNA_00094 0.43 -1.3 105,703 + CCNA_00094 0.43 -1.0 105,723 - CCNA_00094 0.45 +1.6 105,723 - CCNA_00094 0.45 +1.6 105,746 + CCNA_00094 0.47 +0.1 105,769 + CCNA_00094 0.50 -0.3 105,769 + CCNA_00094 0.50 -0.7 105,777 - CCNA_00094 0.51 +1.4 105,777 - CCNA_00094 0.51 +2.2 105,777 - CCNA_00094 0.51 +1.1 105,777 - CCNA_00094 0.51 +1.8 105,804 + CCNA_00094 0.54 -1.4 105,833 + CCNA_00094 0.57 -0.5 105,850 + CCNA_00094 0.59 -0.2 105,855 + CCNA_00094 0.59 +1.4 105,858 - CCNA_00094 0.60 +1.4 105,858 - CCNA_00094 0.60 +1.2 105,858 - CCNA_00094 0.60 +1.9 105,877 + CCNA_00094 0.62 -0.1 105,882 + CCNA_00094 0.62 -0.5 105,884 - CCNA_00094 0.62 +2.2 105,885 - CCNA_00094 0.62 +1.0 105,887 + CCNA_00094 0.63 -1.0 105,964 - CCNA_00094 0.71 +0.7 105,977 + CCNA_00094 0.72 -0.4 105,982 + CCNA_00094 0.73 +0.7 105,985 - CCNA_00094 0.73 -1.0 106,009 + CCNA_00094 0.76 +1.8 106,014 + CCNA_00094 0.76 -2.3 106,014 + CCNA_00094 0.76 +0.1 106,014 + CCNA_00094 0.76 -0.5 106,014 + CCNA_00094 0.76 +0.8 106,022 - CCNA_00094 0.77 +1.2 106,030 - CCNA_00094 0.78 +0.1 106,084 + CCNA_00094 0.84 -0.2 106,092 - CCNA_00094 0.85 +1.7 106,100 - CCNA_00094 0.86 +4.5 106,110 + CCNA_00094 0.87 +2.6 106,118 + CCNA_00094 0.88 -0.2 106,126 - CCNA_00094 0.89 +1.0 106,141 - -0.1 106,143 + -0.0 106,147 - +1.7 106,151 - +2.4 106,151 - -0.7 106,151 - +1.2 106,151 - +0.5 106,177 - -0.8 106,193 + -0.1 106,205 - -0.8 106,212 + +0.9 106,215 - +0.3 106,238 - -0.1 106,240 + -1.2 106,240 + -1.2 106,248 + -0.7 106,248 - -0.5 106,250 - -0.8 106,340 - -0.6 106,361 - +2.1 106,361 - -0.9 106,418 + +1.0 106,452 + CCNA_00095 0.12 +0.1 106,460 - CCNA_00095 0.13 +1.6 106,460 - CCNA_00095 0.13 +0.6 106,460 - CCNA_00095 0.13 +0.9 106,471 + CCNA_00095 0.14 -1.4 106,471 + CCNA_00095 0.14 -2.1 106,492 + CCNA_00095 0.16 +0.2 106,518 + CCNA_00095 0.18 -0.3 106,518 + CCNA_00095 0.18 +0.4 106,518 + CCNA_00095 0.18 -0.9 106,518 + CCNA_00095 0.18 +1.2 106,518 + CCNA_00095 0.18 -0.7 106,518 + CCNA_00095 0.18 -0.4 106,526 - CCNA_00095 0.19 -1.4 106,526 - CCNA_00095 0.19 +1.4 106,526 - CCNA_00095 0.19 +1.7 106,526 - CCNA_00095 0.19 -1.6 106,526 - CCNA_00095 0.19 +1.0 106,526 - CCNA_00095 0.19 +1.2 106,526 - CCNA_00095 0.19 -0.2 106,555 - CCNA_00095 0.22 +0.6 106,596 - CCNA_00095 0.26 -0.7 106,616 - CCNA_00095 0.28 -0.4 106,642 - CCNA_00095 0.31 -0.4 106,678 + CCNA_00095 0.34 -1.0 106,678 + CCNA_00095 0.34 -0.6 106,686 - CCNA_00095 0.35 -1.2 106,686 - CCNA_00095 0.35 +1.4 106,704 + CCNA_00095 0.37 -0.8 106,704 + CCNA_00095 0.37 -0.2 106,712 - CCNA_00095 0.38 +0.2 106,712 - CCNA_00095 0.38 -1.0 106,735 - CCNA_00095 0.40 +0.4 106,842 - CCNA_00095 0.51 +0.0 106,848 + CCNA_00095 0.51 -0.3 106,850 - CCNA_00095 0.52 -1.3 106,856 - CCNA_00095 0.52 +1.1 106,856 - CCNA_00095 0.52 +0.3 106,957 - CCNA_00095 0.62 -0.8 106,957 - CCNA_00095 0.62 -2.0 106,964 + CCNA_00095 0.63 +0.1 106,969 + CCNA_00095 0.64 -0.7 106,972 - CCNA_00095 0.64 -1.6 106,972 - CCNA_00095 0.64 -1.1 106,977 - CCNA_00095 0.64 +0.5 107,049 - CCNA_00095 0.72 -0.3 107,100 - CCNA_00095 0.77 -1.4 107,121 + CCNA_00095 0.79 +0.5 107,134 - CCNA_00095 0.80 -0.4 107,145 - CCNA_00095 0.81 -0.3 107,169 + CCNA_00095 0.84 -1.8 107,169 + CCNA_00095 0.84 -0.9 107,177 - CCNA_00095 0.84 -1.8 107,177 - CCNA_00095 0.84 +1.4 107,213 + CCNA_00095 0.88 -1.5
Or see this region's nucleotide sequence