Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00090

Experiment: PYE with nitrite 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00089 and CCNA_00090 are separated by 64 nucleotidesCCNA_00090 and CCNA_00091 are separated by 205 nucleotides CCNA_00089: CCNA_00089 - MHYT/PAS-family GGDEF/EAL protein, at 99,466 to 101,895 _00089 CCNA_00090: CCNA_00090 - UDP-glucose 4-epimerase, at 101,960 to 102,943 _00090 CCNA_00091: CCNA_00091 - transporter, drug/metabolite exporter family, at 103,149 to 104,042 _00091 Position (kb) 101 102 103Strain fitness (log2 ratio) -2 -1 0 1 2 3at 100.969 kb on - strand, within CCNA_00089at 100.975 kb on - strand, within CCNA_00089at 100.976 kb on - strand, within CCNA_00089at 100.992 kb on - strand, within CCNA_00089at 100.993 kb on - strand, within CCNA_00089at 101.014 kb on + strand, within CCNA_00089at 101.017 kb on - strand, within CCNA_00089at 101.066 kb on + strand, within CCNA_00089at 101.074 kb on - strand, within CCNA_00089at 101.100 kb on - strand, within CCNA_00089at 101.124 kb on - strand, within CCNA_00089at 101.161 kb on - strand, within CCNA_00089at 101.174 kb on + strand, within CCNA_00089at 101.175 kb on + strand, within CCNA_00089at 101.175 kb on + strand, within CCNA_00089at 101.183 kb on - strand, within CCNA_00089at 101.213 kb on - strand, within CCNA_00089at 101.224 kb on + strandat 101.227 kb on - strand, within CCNA_00089at 101.231 kb on - strand, within CCNA_00089at 101.232 kb on - strand, within CCNA_00089at 101.272 kb on + strand, within CCNA_00089at 101.321 kb on - strand, within CCNA_00089at 101.328 kb on + strand, within CCNA_00089at 101.391 kb on + strand, within CCNA_00089at 101.431 kb on + strand, within CCNA_00089at 101.469 kb on - strand, within CCNA_00089at 101.484 kb on + strand, within CCNA_00089at 101.494 kb on - strand, within CCNA_00089at 101.497 kb on - strand, within CCNA_00089at 101.508 kb on + strand, within CCNA_00089at 101.516 kb on - strand, within CCNA_00089at 101.516 kb on - strand, within CCNA_00089at 101.521 kb on - strand, within CCNA_00089at 101.526 kb on - strand, within CCNA_00089at 101.526 kb on - strand, within CCNA_00089at 101.549 kb on + strand, within CCNA_00089at 101.554 kb on + strand, within CCNA_00089at 101.554 kb on + strand, within CCNA_00089at 101.557 kb on - strand, within CCNA_00089at 101.557 kb on - strand, within CCNA_00089at 101.562 kb on - strand, within CCNA_00089at 101.562 kb on - strand, within CCNA_00089at 101.567 kb on - strand, within CCNA_00089at 101.585 kb on + strand, within CCNA_00089at 101.585 kb on + strand, within CCNA_00089at 101.587 kb on - strand, within CCNA_00089at 101.593 kb on - strand, within CCNA_00089at 101.593 kb on - strand, within CCNA_00089at 101.593 kb on - strand, within CCNA_00089at 101.593 kb on - strand, within CCNA_00089at 101.593 kb on - strand, within CCNA_00089at 101.593 kb on - strand, within CCNA_00089at 101.593 kb on - strand, within CCNA_00089at 101.593 kb on - strand, within CCNA_00089at 101.639 kb on - strand, within CCNA_00089at 101.642 kb on + strand, within CCNA_00089at 101.642 kb on + strand, within CCNA_00089at 101.650 kb on - strand, within CCNA_00089at 101.668 kb on - strandat 101.680 kb on - strandat 101.687 kb on + strandat 101.687 kb on + strandat 101.733 kb on - strandat 101.735 kb on + strandat 101.743 kb on - strandat 101.777 kb on - strandat 101.791 kb on - strandat 101.804 kb on - strandat 101.810 kb on + strandat 101.860 kb on - strandat 101.863 kb on - strandat 101.899 kb on + strandat 101.907 kb on - strandat 101.907 kb on - strandat 101.907 kb on - strandat 101.971 kb on + strandat 101.971 kb on - strandat 101.979 kb on - strandat 102.011 kb on - strandat 102.034 kb on + strandat 102.059 kb on - strand, within CCNA_00090at 102.059 kb on - strand, within CCNA_00090at 102.098 kb on - strand, within CCNA_00090at 102.138 kb on + strand, within CCNA_00090at 102.177 kb on - strand, within CCNA_00090at 102.177 kb on - strand, within CCNA_00090at 102.201 kb on - strand, within CCNA_00090at 102.224 kb on - strand, within CCNA_00090at 102.228 kb on + strand, within CCNA_00090at 102.260 kb on + strand, within CCNA_00090at 102.268 kb on - strand, within CCNA_00090at 102.281 kb on + strand, within CCNA_00090at 102.294 kb on - strand, within CCNA_00090at 102.340 kb on - strand, within CCNA_00090at 102.388 kb on - strand, within CCNA_00090at 102.441 kb on - strand, within CCNA_00090at 102.466 kb on - strand, within CCNA_00090at 102.524 kb on + strand, within CCNA_00090at 102.525 kb on + strand, within CCNA_00090at 102.526 kb on + strand, within CCNA_00090at 102.527 kb on + strand, within CCNA_00090at 102.545 kb on - strand, within CCNA_00090at 102.593 kb on + strand, within CCNA_00090at 102.593 kb on + strand, within CCNA_00090at 102.600 kb on - strand, within CCNA_00090at 102.605 kb on - strand, within CCNA_00090at 102.613 kb on + strand, within CCNA_00090at 102.613 kb on - strand, within CCNA_00090at 102.613 kb on - strand, within CCNA_00090at 102.636 kb on + strand, within CCNA_00090at 102.644 kb on - strand, within CCNA_00090at 102.723 kb on + strand, within CCNA_00090at 102.726 kb on + strand, within CCNA_00090at 102.728 kb on + strand, within CCNA_00090at 102.728 kb on + strand, within CCNA_00090at 102.736 kb on - strand, within CCNA_00090at 102.736 kb on - strand, within CCNA_00090at 102.799 kb on + strand, within CCNA_00090at 102.799 kb on + strand, within CCNA_00090at 102.799 kb on + strand, within CCNA_00090at 102.799 kb on + strand, within CCNA_00090at 102.799 kb on + strand, within CCNA_00090at 102.807 kb on + strand, within CCNA_00090at 102.812 kb on + strand, within CCNA_00090at 102.834 kb on + strand, within CCNA_00090at 102.859 kb on - strandat 102.926 kb on + strandat 102.926 kb on + strandat 102.926 kb on + strandat 102.951 kb on + strandat 102.951 kb on + strandat 102.951 kb on + strandat 102.951 kb on + strandat 102.951 kb on + strandat 102.956 kb on - strandat 102.958 kb on - strandat 102.959 kb on - strandat 102.959 kb on - strandat 102.959 kb on - strandat 102.970 kb on + strandat 103.052 kb on + strandat 103.146 kb on + strandat 103.170 kb on - strandat 103.198 kb on + strandat 103.198 kb on + strandat 103.206 kb on - strandat 103.206 kb on - strandat 103.208 kb on + strandat 103.208 kb on - strandat 103.216 kb on - strandat 103.216 kb on - strandat 103.226 kb on + strandat 103.261 kb on + strand, within CCNA_00091at 103.269 kb on - strand, within CCNA_00091at 103.296 kb on + strand, within CCNA_00091at 103.342 kb on - strand, within CCNA_00091at 103.401 kb on + strand, within CCNA_00091at 103.430 kb on - strand, within CCNA_00091at 103.459 kb on + strand, within CCNA_00091at 103.478 kb on + strand, within CCNA_00091at 103.483 kb on + strand, within CCNA_00091at 103.491 kb on - strand, within CCNA_00091at 103.491 kb on - strand, within CCNA_00091at 103.491 kb on - strand, within CCNA_00091at 103.519 kb on + strand, within CCNA_00091at 103.550 kb on - strand, within CCNA_00091at 103.568 kb on + strand, within CCNA_00091at 103.580 kb on + strand, within CCNA_00091at 103.586 kb on - strand, within CCNA_00091at 103.586 kb on - strand, within CCNA_00091at 103.586 kb on - strand, within CCNA_00091at 103.586 kb on - strand, within CCNA_00091at 103.586 kb on - strand, within CCNA_00091at 103.589 kb on + strand, within CCNA_00091at 103.607 kb on - strand, within CCNA_00091at 103.632 kb on + strand, within CCNA_00091at 103.653 kb on + strand, within CCNA_00091at 103.656 kb on - strand, within CCNA_00091at 103.671 kb on - strand, within CCNA_00091at 103.676 kb on - strand, within CCNA_00091at 103.697 kb on + strand, within CCNA_00091at 103.697 kb on + strand, within CCNA_00091at 103.705 kb on - strand, within CCNA_00091at 103.705 kb on - strand, within CCNA_00091at 103.705 kb on - strand, within CCNA_00091at 103.715 kb on + strand, within CCNA_00091at 103.728 kb on - strand, within CCNA_00091at 103.747 kb on + strand, within CCNA_00091at 103.788 kb on - strand, within CCNA_00091at 103.789 kb on + strand, within CCNA_00091at 103.797 kb on - strand, within CCNA_00091at 103.849 kb on + strand, within CCNA_00091at 103.916 kb on + strand, within CCNA_00091at 103.923 kb on + strand, within CCNA_00091at 103.931 kb on - strand, within CCNA_00091

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
remove
100,969 - CCNA_00089 0.62 +1.2
100,975 - CCNA_00089 0.62 -0.5
100,976 - CCNA_00089 0.62 -0.8
100,992 - CCNA_00089 0.63 +0.1
100,993 - CCNA_00089 0.63 +1.5
101,014 + CCNA_00089 0.64 -0.2
101,017 - CCNA_00089 0.64 -1.1
101,066 + CCNA_00089 0.66 +0.4
101,074 - CCNA_00089 0.66 -1.1
101,100 - CCNA_00089 0.67 -0.4
101,124 - CCNA_00089 0.68 +1.3
101,161 - CCNA_00089 0.70 +1.2
101,174 + CCNA_00089 0.70 +0.2
101,175 + CCNA_00089 0.70 -0.0
101,175 + CCNA_00089 0.70 -0.6
101,183 - CCNA_00089 0.71 +0.8
101,213 - CCNA_00089 0.72 +0.4
101,224 + +1.6
101,227 - CCNA_00089 0.72 +1.0
101,231 - CCNA_00089 0.73 +0.2
101,232 - CCNA_00089 0.73 +1.5
101,272 + CCNA_00089 0.74 -1.0
101,321 - CCNA_00089 0.76 -0.2
101,328 + CCNA_00089 0.77 -0.4
101,391 + CCNA_00089 0.79 +0.4
101,431 + CCNA_00089 0.81 +0.6
101,469 - CCNA_00089 0.82 +1.1
101,484 + CCNA_00089 0.83 +1.5
101,494 - CCNA_00089 0.83 +0.1
101,497 - CCNA_00089 0.84 +0.9
101,508 + CCNA_00089 0.84 -0.9
101,516 - CCNA_00089 0.84 +2.4
101,516 - CCNA_00089 0.84 +0.3
101,521 - CCNA_00089 0.85 +1.1
101,526 - CCNA_00089 0.85 +1.3
101,526 - CCNA_00089 0.85 +0.2
101,549 + CCNA_00089 0.86 -0.5
101,554 + CCNA_00089 0.86 -0.7
101,554 + CCNA_00089 0.86 +0.3
101,557 - CCNA_00089 0.86 +1.5
101,557 - CCNA_00089 0.86 +0.2
101,562 - CCNA_00089 0.86 -1.0
101,562 - CCNA_00089 0.86 +0.8
101,567 - CCNA_00089 0.86 +0.8
101,585 + CCNA_00089 0.87 -2.0
101,585 + CCNA_00089 0.87 -1.3
101,587 - CCNA_00089 0.87 +3.0
101,593 - CCNA_00089 0.88 +1.4
101,593 - CCNA_00089 0.88 -0.0
101,593 - CCNA_00089 0.88 +0.7
101,593 - CCNA_00089 0.88 +0.8
101,593 - CCNA_00089 0.88 +2.2
101,593 - CCNA_00089 0.88 +1.8
101,593 - CCNA_00089 0.88 +1.1
101,593 - CCNA_00089 0.88 +0.2
101,639 - CCNA_00089 0.89 +0.8
101,642 + CCNA_00089 0.90 +1.4
101,642 + CCNA_00089 0.90 -0.0
101,650 - CCNA_00089 0.90 +0.7
101,668 - +1.5
101,680 - +1.1
101,687 + -1.6
101,687 + -0.5
101,733 - -0.1
101,735 + +0.3
101,743 - +0.5
101,777 - -0.5
101,791 - +0.8
101,804 - -0.8
101,810 + +0.8
101,860 - +0.4
101,863 - +0.8
101,899 + +1.0
101,907 - -0.1
101,907 - +1.4
101,907 - +0.6
101,971 + -1.4
101,971 - +1.6
101,979 - +2.4
102,011 - -0.4
102,034 + -1.4
102,059 - CCNA_00090 0.10 -0.3
102,059 - CCNA_00090 0.10 -0.6
102,098 - CCNA_00090 0.14 -0.6
102,138 + CCNA_00090 0.18 -0.2
102,177 - CCNA_00090 0.22 +0.4
102,177 - CCNA_00090 0.22 -0.6
102,201 - CCNA_00090 0.24 -1.2
102,224 - CCNA_00090 0.27 +1.3
102,228 + CCNA_00090 0.27 -0.3
102,260 + CCNA_00090 0.30 +0.4
102,268 - CCNA_00090 0.31 +0.6
102,281 + CCNA_00090 0.33 -0.5
102,294 - CCNA_00090 0.34 +1.2
102,340 - CCNA_00090 0.39 -0.5
102,388 - CCNA_00090 0.43 +2.0
102,441 - CCNA_00090 0.49 -0.0
102,466 - CCNA_00090 0.51 -0.2
102,524 + CCNA_00090 0.57 -0.0
102,525 + CCNA_00090 0.57 -1.2
102,526 + CCNA_00090 0.58 +0.8
102,527 + CCNA_00090 0.58 -1.8
102,545 - CCNA_00090 0.59 -1.4
102,593 + CCNA_00090 0.64 -1.8
102,593 + CCNA_00090 0.64 -0.8
102,600 - CCNA_00090 0.65 -0.6
102,605 - CCNA_00090 0.66 +0.3
102,613 + CCNA_00090 0.66 +1.2
102,613 - CCNA_00090 0.66 +0.7
102,613 - CCNA_00090 0.66 +0.6
102,636 + CCNA_00090 0.69 -1.0
102,644 - CCNA_00090 0.70 +0.6
102,723 + CCNA_00090 0.78 +0.5
102,726 + CCNA_00090 0.78 -2.3
102,728 + CCNA_00090 0.78 +0.6
102,728 + CCNA_00090 0.78 -0.6
102,736 - CCNA_00090 0.79 +0.8
102,736 - CCNA_00090 0.79 -0.3
102,799 + CCNA_00090 0.85 -0.3
102,799 + CCNA_00090 0.85 -0.6
102,799 + CCNA_00090 0.85 -0.4
102,799 + CCNA_00090 0.85 -0.5
102,799 + CCNA_00090 0.85 +1.0
102,807 + CCNA_00090 0.86 -0.4
102,812 + CCNA_00090 0.87 -0.0
102,834 + CCNA_00090 0.89 +0.8
102,859 - -1.7
102,926 + +1.4
102,926 + +0.4
102,926 + -1.3
102,951 + -1.5
102,951 + -0.7
102,951 + +0.2
102,951 + +2.0
102,951 + +2.2
102,956 - +2.2
102,958 - -1.5
102,959 - +0.1
102,959 - -1.4
102,959 - +1.8
102,970 + -0.8
103,052 + -1.7
103,146 + +0.3
103,170 - +1.6
103,198 + +1.1
103,198 + +2.0
103,206 - -2.4
103,206 - -0.4
103,208 + -1.3
103,208 - +0.3
103,216 - +1.0
103,216 - -1.9
103,226 + +0.1
103,261 + CCNA_00091 0.13 -1.2
103,269 - CCNA_00091 0.13 +1.0
103,296 + CCNA_00091 0.16 -0.6
103,342 - CCNA_00091 0.22 -0.5
103,401 + CCNA_00091 0.28 +0.1
103,430 - CCNA_00091 0.31 -1.7
103,459 + CCNA_00091 0.35 -1.1
103,478 + CCNA_00091 0.37 -0.3
103,483 + CCNA_00091 0.37 +0.8
103,491 - CCNA_00091 0.38 -0.0
103,491 - CCNA_00091 0.38 -0.7
103,491 - CCNA_00091 0.38 -1.0
103,519 + CCNA_00091 0.41 +0.6
103,550 - CCNA_00091 0.45 -1.7
103,568 + CCNA_00091 0.47 -2.5
103,580 + CCNA_00091 0.48 -0.4
103,586 - CCNA_00091 0.49 +0.1
103,586 - CCNA_00091 0.49 -1.1
103,586 - CCNA_00091 0.49 +0.3
103,586 - CCNA_00091 0.49 -1.4
103,586 - CCNA_00091 0.49 +0.9
103,589 + CCNA_00091 0.49 -2.0
103,607 - CCNA_00091 0.51 -0.3
103,632 + CCNA_00091 0.54 +0.1
103,653 + CCNA_00091 0.56 +0.2
103,656 - CCNA_00091 0.57 -0.1
103,671 - CCNA_00091 0.58 -1.1
103,676 - CCNA_00091 0.59 +0.4
103,697 + CCNA_00091 0.61 -0.3
103,697 + CCNA_00091 0.61 +1.0
103,705 - CCNA_00091 0.62 +0.2
103,705 - CCNA_00091 0.62 +1.0
103,705 - CCNA_00091 0.62 +0.8
103,715 + CCNA_00091 0.63 -0.5
103,728 - CCNA_00091 0.65 -0.3
103,747 + CCNA_00091 0.67 -1.2
103,788 - CCNA_00091 0.71 -0.5
103,789 + CCNA_00091 0.72 -0.2
103,797 - CCNA_00091 0.72 -1.9
103,849 + CCNA_00091 0.78 -0.4
103,916 + CCNA_00091 0.86 -0.7
103,923 + CCNA_00091 0.87 -2.1
103,931 - CCNA_00091 0.87 -0.8

Or see this region's nucleotide sequence