Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00005

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,196	+		CCNA_00003	0.58	-0.5
2,196	+		CCNA_00003	0.58	-1.1
2,200	+		CCNA_00003	0.58	-0.6
2,204	-		CCNA_00003	0.59	-0.6
2,204	-		CCNA_00003	0.59	-1.1
2,204	-		CCNA_00003	0.59	+0.6
2,227	+		CCNA_00003	0.61	+1.2
2,276	+		CCNA_00003	0.67	-0.3
2,298	+		CCNA_00003	0.70	+0.4
2,298	+		CCNA_00003	0.70	-0.6
2,303	+		CCNA_00003	0.70	+0.4
2,303	+		CCNA_00003	0.70	-0.9
2,306	-		CCNA_00003	0.71	+0.1
2,311	-		CCNA_00003	0.71	-0.3
2,316	+		CCNA_00003	0.72	+0.2
2,323	+		CCNA_00003	0.73	-0.2
2,399	-		CCNA_00003	0.81	-0.1
2,407	-		CCNA_00003	0.82	-2.6
2,427	+		CCNA_00003	0.85	-1.7
2,442	+		CCNA_00003	0.86	+1.2
2,442	+		CCNA_00003	0.86	+0.5
2,442	+		CCNA_00003	0.86	+0.1
2,450	-		CCNA_00003	0.87	-2.3
2,458	+		CCNA_00003	0.88	+1.8
2,487	+				+1.2
2,539	+				+0.0
2,552	+				+0.8
3,113	+				-1.6
3,131	-				-2.3
3,134	+				-0.4
3,142	-				+1.4
3,142	-				+0.6
3,142	-				+0.5
3,142	-				-1.7
3,142	-				+2.6
3,153	+				-0.9
3,161	-				+1.6
3,187	+				-0.5
3,195	-				+0.5
3,917	-				-1.0
3,920	+				+1.5
3,937	+				+3.2
3,951	+				+0.7
3,951	+				+1.5
3,951	+				+1.6
3,959	-				-0.1
3,959	-				+0.4
3,964	-				-0.2
3,964	-				+0.2
3,977	-				+1.4
3,977	-				-0.1
3,987	+				+0.9
3,987	+				+1.7
3,987	+				+1.6
3,987	+				+3.3
3,987	+				+0.9
3,987	+				+1.9
3,987	+				+0.8
3,987	+				+1.6
3,987	+				+0.5
3,987	+				+1.2
3,987	+				+0.8
3,987	+				+0.7
3,987	+				+1.1
3,987	+				+0.6
3,987	+				+1.6
3,987	+				+1.5
3,987	+				-0.6
3,989	+				+1.8
3,989	+				+0.4
3,995	-				-0.7
3,995	-				-0.6
3,995	-				+0.3
3,995	-				+3.8
3,995	-				-0.5
3,995	-				-1.2
3,995	-				-0.7
3,995	-				-0.8
3,995	-				-0.8
3,995	-				-1.1
3,995	-				-0.7
3,995	-				-0.7
3,995	-				-0.7
3,995	-				-0.2
3,995	-				-0.4
3,995	-				+0.5
3,995	-				-1.9
3,995	-				+0.9
3,995	-				-0.4
3,995	-				-0.7
3,995	-				-0.8
3,995	-				-1.1
3,995	-				-0.6
3,995	-				+0.5
3,995	-				+1.8
3,997	-				+3.2
4,012	+				+2.0
4,030	+				+1.1
4,030	+				+0.1
4,030	+				+0.5
4,038	-				-0.7
4,038	-				-0.6
4,038	-				-1.4
4,060	-				-0.7
4,071	+				-1.5
4,076	+				+1.6
4,079	-				-1.6
4,084	-				-0.4
4,084	-				+0.3
4,084	-				-1.3
4,084	-				-1.3
4,084	-				-1.1
4,093	-				+0.6
4,094	-				+1.4
4,095	+				-0.0
4,103	-		CCNA_00006	0.10	-1.1
4,120	-		CCNA_00006	0.12	+2.4
4,122	-		CCNA_00006	0.13	-0.4
4,130	-		CCNA_00006	0.14	-0.4
4,137	+		CCNA_00006	0.15	+0.6
4,150	-		CCNA_00006	0.16	-0.7
4,166	+		CCNA_00006	0.18	-0.6
4,175	+		CCNA_00006	0.19	-1.1
4,185	+		CCNA_00006	0.21	-0.2
4,190	+		CCNA_00006	0.21	-1.1
4,246	+		CCNA_00006	0.28	+0.1
4,247	+		CCNA_00006	0.29	-1.5
4,255	-		CCNA_00006	0.30	+0.8
4,274	-		CCNA_00006	0.32	+1.0
4,275	-		CCNA_00006	0.32	-1.4
4,275	-		CCNA_00006	0.32	+1.6
4,304	+		CCNA_00006	0.36	-2.1
4,329	+		CCNA_00006	0.39	+0.3
4,351	-		CCNA_00006	0.42	+0.4
4,386	+		CCNA_00006	0.46	-0.1
4,386	+		CCNA_00006	0.46	-0.8
4,407	+		CCNA_00006	0.49	-0.6
4,428	+		CCNA_00006	0.51	-0.2
4,492	+		CCNA_00006	0.60	+0.7
4,492	+		CCNA_00006	0.60	-3.2
4,492	+		CCNA_00006	0.60	-1.3
4,492	+		CCNA_00006	0.60	-0.5
4,492	+		CCNA_00006	0.60	-1.1
4,500	-		CCNA_00006	0.61	-0.7
4,500	-		CCNA_00006	0.61	+1.0
4,500	-		CCNA_00006	0.61	+2.0
4,500	-		CCNA_00006	0.61	+0.6
4,500	-		CCNA_00006	0.61	+0.1
4,500	-		CCNA_00006	0.61	+0.4
4,500	-		CCNA_00006	0.61	-0.4
4,500	-		CCNA_00006	0.61	+0.4
4,519	-		CCNA_00006	0.63	+0.1
4,587	+		CCNA_00006	0.72	-0.9
4,603	-		CCNA_00006	0.74	-2.3
4,661	+		CCNA_00006	0.81	-2.5
4,666	+		CCNA_00006	0.82	-0.8
4,674	-		CCNA_00006	0.83	+0.3
4,688	+		CCNA_00006	0.84	+0.0
4,783	+				-0.5
4,783	+				+0.7
4,783	+				-0.2
4,783	-				-0.4
4,791	-				-0.7
4,795	+				-1.6
4,795	+				-0.5
4,795	+				-0.8
4,795	+				-0.6
4,795	+				-2.3
4,795	+				-1.0
4,795	+				+0.5
4,795	+				-0.9
4,803	-				+0.1
4,803	-				+0.3
4,803	-				+3.0
4,815	+				+1.6
4,863	+				+3.2