Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS23110

Experiment: no_plant_soil sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS23105 and ABZR87_RS23110 overlap by 1 nucleotidesABZR87_RS23110 and ABZR87_RS23115 are separated by 3 nucleotides ABZR87_RS23105: ABZR87_RS23105 - efflux RND transporter periplasmic adaptor subunit, at 1,545,579 to 1,546,886 _RS23105 ABZR87_RS23110: ABZR87_RS23110 - efflux transporter outer membrane subunit, at 1,546,886 to 1,548,355 _RS23110 ABZR87_RS23115: ABZR87_RS23115 - hypothetical protein, at 1,548,359 to 1,549,288 _RS23115 Position (kb) 1546 1547 1548 1549Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1545.897 kb on + strand, within ABZR87_RS23105at 1545.915 kb on + strand, within ABZR87_RS23105at 1545.915 kb on + strand, within ABZR87_RS23105at 1545.915 kb on + strand, within ABZR87_RS23105at 1545.915 kb on + strand, within ABZR87_RS23105at 1545.915 kb on + strand, within ABZR87_RS23105at 1545.916 kb on - strand, within ABZR87_RS23105at 1545.916 kb on - strand, within ABZR87_RS23105at 1545.916 kb on - strand, within ABZR87_RS23105at 1545.916 kb on - strand, within ABZR87_RS23105at 1545.934 kb on - strand, within ABZR87_RS23105at 1545.934 kb on - strand, within ABZR87_RS23105at 1546.362 kb on + strand, within ABZR87_RS23105at 1546.362 kb on + strand, within ABZR87_RS23105at 1546.362 kb on + strand, within ABZR87_RS23105at 1546.362 kb on + strand, within ABZR87_RS23105at 1546.362 kb on + strand, within ABZR87_RS23105at 1546.363 kb on - strand, within ABZR87_RS23105at 1546.363 kb on - strand, within ABZR87_RS23105at 1546.368 kb on + strand, within ABZR87_RS23105at 1546.368 kb on + strand, within ABZR87_RS23105at 1546.368 kb on + strand, within ABZR87_RS23105at 1546.368 kb on + strand, within ABZR87_RS23105at 1546.369 kb on - strand, within ABZR87_RS23105at 1546.369 kb on - strand, within ABZR87_RS23105at 1546.369 kb on - strand, within ABZR87_RS23105at 1546.369 kb on - strand, within ABZR87_RS23105at 1546.384 kb on - strand, within ABZR87_RS23105at 1546.384 kb on - strand, within ABZR87_RS23105at 1546.557 kb on + strand, within ABZR87_RS23105at 1546.557 kb on + strand, within ABZR87_RS23105at 1546.557 kb on + strand, within ABZR87_RS23105at 1546.558 kb on - strand, within ABZR87_RS23105at 1546.558 kb on - strand, within ABZR87_RS23105at 1546.558 kb on - strand, within ABZR87_RS23105at 1546.558 kb on - strand, within ABZR87_RS23105at 1546.596 kb on - strand, within ABZR87_RS23105at 1546.629 kb on + strand, within ABZR87_RS23105at 1546.629 kb on + strand, within ABZR87_RS23105at 1546.629 kb on + strand, within ABZR87_RS23105at 1546.630 kb on - strand, within ABZR87_RS23105at 1546.630 kb on - strand, within ABZR87_RS23105at 1546.630 kb on - strand, within ABZR87_RS23105at 1546.734 kb on + strand, within ABZR87_RS23105at 1546.967 kb on + strandat 1546.967 kb on + strandat 1547.264 kb on + strand, within ABZR87_RS23110at 1547.319 kb on + strand, within ABZR87_RS23110at 1547.319 kb on + strand, within ABZR87_RS23110at 1547.319 kb on + strand, within ABZR87_RS23110at 1547.320 kb on - strand, within ABZR87_RS23110at 1547.320 kb on - strand, within ABZR87_RS23110at 1547.320 kb on - strand, within ABZR87_RS23110at 1547.320 kb on - strand, within ABZR87_RS23110at 1547.320 kb on - strand, within ABZR87_RS23110at 1547.324 kb on + strand, within ABZR87_RS23110at 1547.324 kb on + strand, within ABZR87_RS23110at 1547.324 kb on + strand, within ABZR87_RS23110at 1547.450 kb on + strand, within ABZR87_RS23110at 1547.451 kb on - strand, within ABZR87_RS23110at 1547.642 kb on + strand, within ABZR87_RS23110at 1547.643 kb on - strand, within ABZR87_RS23110at 1548.002 kb on + strand, within ABZR87_RS23110at 1548.162 kb on - strand, within ABZR87_RS23110at 1548.162 kb on - strand, within ABZR87_RS23110at 1548.560 kb on + strand, within ABZR87_RS23115at 1548.560 kb on + strand, within ABZR87_RS23115at 1548.561 kb on - strand, within ABZR87_RS23115at 1548.561 kb on - strand, within ABZR87_RS23115at 1548.561 kb on - strand, within ABZR87_RS23115at 1548.561 kb on - strand, within ABZR87_RS23115at 1548.561 kb on - strand, within ABZR87_RS23115at 1548.618 kb on + strand, within ABZR87_RS23115at 1548.618 kb on + strand, within ABZR87_RS23115at 1548.618 kb on + strand, within ABZR87_RS23115at 1548.618 kb on + strand, within ABZR87_RS23115at 1548.618 kb on + strand, within ABZR87_RS23115at 1548.619 kb on - strand, within ABZR87_RS23115at 1548.619 kb on - strand, within ABZR87_RS23115at 1548.619 kb on - strand, within ABZR87_RS23115at 1548.619 kb on - strand, within ABZR87_RS23115at 1548.619 kb on - strand, within ABZR87_RS23115at 1548.619 kb on - strand, within ABZR87_RS23115at 1548.619 kb on - strand, within ABZR87_RS23115at 1548.840 kb on + strand, within ABZR87_RS23115at 1548.840 kb on + strand, within ABZR87_RS23115at 1548.841 kb on - strand, within ABZR87_RS23115at 1548.841 kb on - strand, within ABZR87_RS23115at 1548.873 kb on + strand, within ABZR87_RS23115at 1548.874 kb on - strand, within ABZR87_RS23115at 1549.020 kb on + strand, within ABZR87_RS23115at 1549.234 kb on - strandat 1549.234 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB
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1,545,897 + ABZR87_RS23105 0.24 -0.7
1,545,915 + ABZR87_RS23105 0.26 -1.9
1,545,915 + ABZR87_RS23105 0.26 -0.7
1,545,915 + ABZR87_RS23105 0.26 -0.8
1,545,915 + ABZR87_RS23105 0.26 -0.2
1,545,915 + ABZR87_RS23105 0.26 -1.3
1,545,916 - ABZR87_RS23105 0.26 -0.4
1,545,916 - ABZR87_RS23105 0.26 +0.1
1,545,916 - ABZR87_RS23105 0.26 +0.7
1,545,916 - ABZR87_RS23105 0.26 +0.7
1,545,934 - ABZR87_RS23105 0.27 -2.6
1,545,934 - ABZR87_RS23105 0.27 -0.8
1,546,362 + ABZR87_RS23105 0.60 +0.6
1,546,362 + ABZR87_RS23105 0.60 -1.0
1,546,362 + ABZR87_RS23105 0.60 -0.8
1,546,362 + ABZR87_RS23105 0.60 -0.5
1,546,362 + ABZR87_RS23105 0.60 -0.7
1,546,363 - ABZR87_RS23105 0.60 -0.1
1,546,363 - ABZR87_RS23105 0.60 -1.9
1,546,368 + ABZR87_RS23105 0.60 -0.3
1,546,368 + ABZR87_RS23105 0.60 +0.4
1,546,368 + ABZR87_RS23105 0.60 -0.3
1,546,368 + ABZR87_RS23105 0.60 +0.4
1,546,369 - ABZR87_RS23105 0.60 -0.2
1,546,369 - ABZR87_RS23105 0.60 +1.1
1,546,369 - ABZR87_RS23105 0.60 -0.9
1,546,369 - ABZR87_RS23105 0.60 +0.5
1,546,384 - ABZR87_RS23105 0.62 -1.1
1,546,384 - ABZR87_RS23105 0.62 -0.4
1,546,557 + ABZR87_RS23105 0.75 +0.0
1,546,557 + ABZR87_RS23105 0.75 +0.1
1,546,557 + ABZR87_RS23105 0.75 -0.4
1,546,558 - ABZR87_RS23105 0.75 +1.0
1,546,558 - ABZR87_RS23105 0.75 +0.7
1,546,558 - ABZR87_RS23105 0.75 -0.4
1,546,558 - ABZR87_RS23105 0.75 -1.3
1,546,596 - ABZR87_RS23105 0.78 +1.1
1,546,629 + ABZR87_RS23105 0.80 +0.7
1,546,629 + ABZR87_RS23105 0.80 +0.2
1,546,629 + ABZR87_RS23105 0.80 -1.3
1,546,630 - ABZR87_RS23105 0.80 -0.0
1,546,630 - ABZR87_RS23105 0.80 +0.4
1,546,630 - ABZR87_RS23105 0.80 -0.6
1,546,734 + ABZR87_RS23105 0.88 +0.6
1,546,967 + +0.1
1,546,967 + +0.4
1,547,264 + ABZR87_RS23110 0.26 -0.8
1,547,319 + ABZR87_RS23110 0.29 -2.3
1,547,319 + ABZR87_RS23110 0.29 -1.6
1,547,319 + ABZR87_RS23110 0.29 +1.4
1,547,320 - ABZR87_RS23110 0.30 -1.8
1,547,320 - ABZR87_RS23110 0.30 +0.1
1,547,320 - ABZR87_RS23110 0.30 -2.4
1,547,320 - ABZR87_RS23110 0.30 +0.2
1,547,320 - ABZR87_RS23110 0.30 -0.8
1,547,324 + ABZR87_RS23110 0.30 -0.7
1,547,324 + ABZR87_RS23110 0.30 -0.5
1,547,324 + ABZR87_RS23110 0.30 -0.5
1,547,450 + ABZR87_RS23110 0.38 -0.7
1,547,451 - ABZR87_RS23110 0.38 -0.7
1,547,642 + ABZR87_RS23110 0.51 +0.1
1,547,643 - ABZR87_RS23110 0.51 -1.9
1,548,002 + ABZR87_RS23110 0.76 +1.8
1,548,162 - ABZR87_RS23110 0.87 -0.5
1,548,162 - ABZR87_RS23110 0.87 -1.3
1,548,560 + ABZR87_RS23115 0.22 -0.0
1,548,560 + ABZR87_RS23115 0.22 +0.6
1,548,561 - ABZR87_RS23115 0.22 -0.3
1,548,561 - ABZR87_RS23115 0.22 +0.8
1,548,561 - ABZR87_RS23115 0.22 +3.0
1,548,561 - ABZR87_RS23115 0.22 -0.5
1,548,561 - ABZR87_RS23115 0.22 -0.1
1,548,618 + ABZR87_RS23115 0.28 +0.7
1,548,618 + ABZR87_RS23115 0.28 -0.3
1,548,618 + ABZR87_RS23115 0.28 +1.8
1,548,618 + ABZR87_RS23115 0.28 +0.9
1,548,618 + ABZR87_RS23115 0.28 +0.4
1,548,619 - ABZR87_RS23115 0.28 +2.1
1,548,619 - ABZR87_RS23115 0.28 +0.8
1,548,619 - ABZR87_RS23115 0.28 +0.1
1,548,619 - ABZR87_RS23115 0.28 +0.4
1,548,619 - ABZR87_RS23115 0.28 -0.6
1,548,619 - ABZR87_RS23115 0.28 +0.2
1,548,619 - ABZR87_RS23115 0.28 -0.4
1,548,840 + ABZR87_RS23115 0.52 +0.3
1,548,840 + ABZR87_RS23115 0.52 -0.1
1,548,841 - ABZR87_RS23115 0.52 +0.5
1,548,841 - ABZR87_RS23115 0.52 +0.8
1,548,873 + ABZR87_RS23115 0.55 +0.4
1,548,874 - ABZR87_RS23115 0.55 -0.6
1,549,020 + ABZR87_RS23115 0.71 -0.3
1,549,234 - -0.6
1,549,234 - -0.4

Or see this region's nucleotide sequence