Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22815

Experiment: no_plant_soil sample 3; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no_plant_soil sample 3; outgrowth in LB
1,479,108	+				-0.5
1,479,168	+				+0.3
1,479,168	+				-0.7
1,479,168	+				-1.0
1,479,169	-				+0.4
1,479,170	+				-0.5
1,479,171	-				-0.7
1,479,174	+				+0.9
1,479,174	+				-0.2
1,479,175	-				-2.8
1,479,175	-				-1.1
1,479,215	+				-1.7
1,479,216	-				-0.6
1,479,216	-				+0.8
1,479,218	+				-0.0
1,479,311	-				+0.4
1,479,319	+				+0.4
1,479,378	-				+0.2
1,479,402	+				+0.0
1,479,479	+				-1.1
1,479,588	-				-0.9
1,479,598	+				-0.9
1,479,598	+				-0.2
1,479,598	+				+0.1
1,479,598	+				-0.2
1,479,599	-				-0.5
1,479,599	-				-1.3
1,479,599	-				+0.3
1,479,643	+				+0.3
1,479,683	-				-0.5
1,479,703	-				-0.4
1,479,733	+				-0.3
1,479,734	-				+0.1
1,479,766	-				-0.0
1,479,795	+				-0.2
1,479,923	+				-1.4
1,479,924	-				+0.3
1,479,924	-				-0.7
1,479,961	+				-0.6
1,480,122	-		ABZR87_RS22815	0.10	+0.5
1,480,130	+		ABZR87_RS22815	0.11	-0.3
1,480,130	+		ABZR87_RS22815	0.11	-0.1
1,480,130	+		ABZR87_RS22815	0.11	-0.7
1,480,131	-		ABZR87_RS22815	0.11	+0.3
1,480,131	-		ABZR87_RS22815	0.11	+0.5
1,480,131	-		ABZR87_RS22815	0.11	+0.6
1,480,131	-		ABZR87_RS22815	0.11	+0.2
1,480,131	-		ABZR87_RS22815	0.11	-0.4
1,480,139	+		ABZR87_RS22815	0.11	-0.3
1,480,140	-		ABZR87_RS22815	0.11	-0.9
1,480,169	+		ABZR87_RS22815	0.14	-0.3
1,480,169	+		ABZR87_RS22815	0.14	-0.1
1,480,169	+		ABZR87_RS22815	0.14	+0.1
1,480,289	-		ABZR87_RS22815	0.22	+0.1
1,480,452	-		ABZR87_RS22815	0.33	+0.7
1,480,452	-		ABZR87_RS22815	0.33	-0.4
1,480,452	-		ABZR87_RS22815	0.33	-0.1
1,480,559	+		ABZR87_RS22815	0.41	-0.3
1,480,559	+		ABZR87_RS22815	0.41	-0.2
1,480,559	+		ABZR87_RS22815	0.41	+0.5
1,480,559	+		ABZR87_RS22815	0.41	-0.2
1,480,592	+		ABZR87_RS22815	0.43	-1.1
1,480,592	+		ABZR87_RS22815	0.43	-0.2
1,480,593	-		ABZR87_RS22815	0.43	-2.5
1,480,655	+		ABZR87_RS22815	0.48	-0.4
1,480,655	+		ABZR87_RS22815	0.48	-0.4
1,480,655	+		ABZR87_RS22815	0.48	-0.2
1,480,655	+		ABZR87_RS22815	0.48	-2.3
1,480,655	+		ABZR87_RS22815	0.48	-1.4
1,480,656	-		ABZR87_RS22815	0.48	+1.4
1,480,656	-		ABZR87_RS22815	0.48	-1.0
1,480,656	-		ABZR87_RS22815	0.48	+0.8
1,480,656	-		ABZR87_RS22815	0.48	+0.3
1,480,656	-		ABZR87_RS22815	0.48	+0.6
1,480,658	+		ABZR87_RS22815	0.48	-0.7
1,480,692	-		ABZR87_RS22815	0.50	-0.8
1,480,733	+		ABZR87_RS22815	0.53	-1.5
1,480,733	+		ABZR87_RS22815	0.53	-0.3
1,480,733	+		ABZR87_RS22815	0.53	+0.1
1,480,733	+		ABZR87_RS22815	0.53	-1.0
1,480,734	-		ABZR87_RS22815	0.53	-1.5
1,480,819	+		ABZR87_RS22815	0.59	+0.5
1,480,820	-		ABZR87_RS22815	0.59	+0.5
1,480,820	-		ABZR87_RS22815	0.59	-0.1
1,480,829	+		ABZR87_RS22815	0.60	-0.7
1,480,829	+		ABZR87_RS22815	0.60	-0.0
1,480,829	+		ABZR87_RS22815	0.60	-1.1
1,480,830	-		ABZR87_RS22815	0.60	-0.2
1,480,830	-		ABZR87_RS22815	0.60	+0.2
1,480,830	-		ABZR87_RS22815	0.60	+0.6
1,480,830	-		ABZR87_RS22815	0.60	-0.8
1,480,871	+		ABZR87_RS22815	0.63	+0.6
1,480,871	+		ABZR87_RS22815	0.63	-0.6
1,480,872	-		ABZR87_RS22815	0.63	+0.2
1,480,872	-		ABZR87_RS22815	0.63	+0.2
1,480,872	-		ABZR87_RS22815	0.63	-1.9
1,480,961	+		ABZR87_RS22815	0.69	-1.4
1,480,962	-		ABZR87_RS22815	0.69	+0.1
1,480,962	-		ABZR87_RS22815	0.69	-0.2
1,480,962	-		ABZR87_RS22815	0.69	-1.6
1,480,964	+		ABZR87_RS22815	0.70	-1.1
1,480,964	+		ABZR87_RS22815	0.70	+0.8
1,480,964	+		ABZR87_RS22815	0.70	-0.2
1,480,964	+		ABZR87_RS22815	0.70	-0.6
1,480,964	+		ABZR87_RS22815	0.70	-1.6
1,480,965	-		ABZR87_RS22815	0.70	+0.3
1,480,965	-		ABZR87_RS22815	0.70	-0.4
1,481,042	+		ABZR87_RS22815	0.75	-2.2
1,481,042	+		ABZR87_RS22815	0.75	-0.1
1,481,043	-		ABZR87_RS22815	0.75	+0.0
1,481,043	-		ABZR87_RS22815	0.75	-0.9
1,481,083	+		ABZR87_RS22815	0.78	-0.3
1,481,083	+		ABZR87_RS22815	0.78	-0.7
1,481,083	+		ABZR87_RS22815	0.78	+0.1
1,481,083	+		ABZR87_RS22815	0.78	+0.2
1,481,084	-		ABZR87_RS22815	0.78	+0.6
1,481,084	-		ABZR87_RS22815	0.78	-1.0
1,481,183	+		ABZR87_RS22815	0.85	+0.6
1,481,208	-		ABZR87_RS22815	0.87	-0.8
1,481,208	-		ABZR87_RS22815	0.87	+0.5
1,481,208	-		ABZR87_RS22815	0.87	-0.5
1,481,208	-		ABZR87_RS22815	0.87	-0.7
1,481,252	+		ABZR87_RS22815	0.90	+1.0
1,481,252	+		ABZR87_RS22815	0.90	-0.2
1,481,252	+		ABZR87_RS22815	0.90	-0.2
1,481,253	-		ABZR87_RS22815	0.90	-0.7
1,481,253	-		ABZR87_RS22815	0.90	-0.8
1,481,253	-		ABZR87_RS22815	0.90	+0.2
1,481,318	+				-0.9
1,481,319	-				-1.1
1,481,319	-				-0.8
1,481,330	+				-0.1
1,481,331	-				-0.5
1,481,331	-				-0.4
1,481,360	+				+0.8
1,481,391	-				-0.5
1,481,391	-				-0.4
1,481,393	+				+0.6
1,481,393	+				-1.8
1,481,393	+				-1.4
1,481,394	-				+0.4
1,481,511	+				-1.1
1,481,546	-				-0.1
1,481,695	+				+0.1
1,481,695	+				+0.1
1,481,940	+		ABZR87_RS22820	0.19	-0.2
1,481,940	+		ABZR87_RS22820	0.19	+0.3
1,481,940	+		ABZR87_RS22820	0.19	-2.4
1,481,940	+		ABZR87_RS22820	0.19	+0.6
1,481,941	-		ABZR87_RS22820	0.19	+3.2
1,481,941	-		ABZR87_RS22820	0.19	+0.2
1,481,941	-		ABZR87_RS22820	0.19	-1.0
1,482,048	+		ABZR87_RS22820	0.25	-1.6
1,482,049	-		ABZR87_RS22820	0.26	-0.2
1,482,049	-		ABZR87_RS22820	0.26	+0.0
1,482,049	-		ABZR87_RS22820	0.26	+0.4
1,482,049	-		ABZR87_RS22820	0.26	-0.4
1,482,049	-		ABZR87_RS22820	0.26	-0.2
1,482,049	-		ABZR87_RS22820	0.26	+0.4
1,482,049	-		ABZR87_RS22820	0.26	-0.7
1,482,050	+		ABZR87_RS22820	0.26	-0.2
1,482,051	-		ABZR87_RS22820	0.26	-1.0
1,482,051	-		ABZR87_RS22820	0.26	-1.8
1,482,051	-		ABZR87_RS22820	0.26	-0.0
1,482,051	-		ABZR87_RS22820	0.26	+0.2
1,482,187	-		ABZR87_RS22820	0.34	-0.0
1,482,331	-		ABZR87_RS22820	0.43	+0.0
1,482,348	+		ABZR87_RS22820	0.44	-0.1
1,482,349	-		ABZR87_RS22820	0.44	-0.9
1,482,378	+		ABZR87_RS22820	0.46	-0.1
1,482,379	-		ABZR87_RS22820	0.46	+0.1