Experiment: no_plant_soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS22630 and ABZR87_RS22635 are separated by 145 nucleotides ABZR87_RS22635 and ABZR87_RS22640 are separated by 105 nucleotides ABZR87_RS22640 and ABZR87_RS22645 are separated by 237 nucleotides ABZR87_RS22645 and ABZR87_RS22650 are separated by 379 nucleotides
ABZR87_RS22630: ABZR87_RS22630 - SDR family oxidoreductase, at 1,435,399 to 1,436,421
_RS22630
ABZR87_RS22635: ABZR87_RS22635 - hypothetical protein, at 1,436,567 to 1,436,761
_RS22635
ABZR87_RS22640: ABZR87_RS22640 - hypothetical protein, at 1,436,867 to 1,437,151
_RS22640
ABZR87_RS22645: ABZR87_RS22645 - hypothetical protein, at 1,437,389 to 1,437,619
_RS22645
ABZR87_RS22650: ABZR87_RS22650 - PgaD family protein, at 1,437,999 to 1,439,009
_RS22650
Position (kb)
1437
1438 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1436.832 kb on + strand at 1436.866 kb on - strand at 1437.270 kb on - strand at 1437.270 kb on - strand at 1437.308 kb on + strand at 1437.309 kb on - strand at 1437.457 kb on - strand, within ABZR87_RS22645 at 1437.457 kb on - strand, within ABZR87_RS22645 at 1437.480 kb on + strand, within ABZR87_RS22645 at 1437.480 kb on + strand, within ABZR87_RS22645 at 1437.684 kb on - strand at 1437.759 kb on + strand at 1437.759 kb on + strand at 1437.759 kb on + strand at 1437.759 kb on + strand at 1437.760 kb on - strand at 1437.760 kb on - strand at 1437.760 kb on - strand at 1438.000 kb on + strand at 1438.000 kb on + strand at 1438.000 kb on + strand at 1438.001 kb on - strand at 1438.001 kb on - strand at 1438.228 kb on + strand, within ABZR87_RS22650 at 1438.228 kb on + strand, within ABZR87_RS22650 at 1438.228 kb on + strand, within ABZR87_RS22650 at 1438.229 kb on - strand, within ABZR87_RS22650 at 1438.477 kb on + strand, within ABZR87_RS22650
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB remove 1,436,832 + +1.1 1,436,866 - +0.9 1,437,270 - +0.9 1,437,270 - -0.7 1,437,308 + -1.6 1,437,309 - -0.2 1,437,457 - ABZR87_RS22645 0.29 -2.8 1,437,457 - ABZR87_RS22645 0.29 -0.0 1,437,480 + ABZR87_RS22645 0.39 -1.2 1,437,480 + ABZR87_RS22645 0.39 -0.6 1,437,684 - -0.2 1,437,759 + -0.1 1,437,759 + +1.5 1,437,759 + +0.3 1,437,759 + +0.2 1,437,760 - +0.8 1,437,760 - -0.4 1,437,760 - -0.5 1,438,000 + -0.3 1,438,000 + +0.6 1,438,000 + +0.4 1,438,001 - +1.2 1,438,001 - -0.7 1,438,228 + ABZR87_RS22650 0.23 -0.3 1,438,228 + ABZR87_RS22650 0.23 +1.3 1,438,228 + ABZR87_RS22650 0.23 -0.9 1,438,229 - ABZR87_RS22650 0.23 -1.0 1,438,477 + ABZR87_RS22650 0.47 -0.1
Or see this region's nucleotide sequence