Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22645

Experiment: no_plant_soil sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22630 and ABZR87_RS22635 are separated by 145 nucleotidesABZR87_RS22635 and ABZR87_RS22640 are separated by 105 nucleotidesABZR87_RS22640 and ABZR87_RS22645 are separated by 237 nucleotidesABZR87_RS22645 and ABZR87_RS22650 are separated by 379 nucleotides ABZR87_RS22630: ABZR87_RS22630 - SDR family oxidoreductase, at 1,435,399 to 1,436,421 _RS22630 ABZR87_RS22635: ABZR87_RS22635 - hypothetical protein, at 1,436,567 to 1,436,761 _RS22635 ABZR87_RS22640: ABZR87_RS22640 - hypothetical protein, at 1,436,867 to 1,437,151 _RS22640 ABZR87_RS22645: ABZR87_RS22645 - hypothetical protein, at 1,437,389 to 1,437,619 _RS22645 ABZR87_RS22650: ABZR87_RS22650 - PgaD family protein, at 1,437,999 to 1,439,009 _RS22650 Position (kb) 1437 1438Strain fitness (log2 ratio) -3 -2 -1 0 1at 1436.832 kb on + strandat 1436.866 kb on - strandat 1437.270 kb on - strandat 1437.270 kb on - strandat 1437.308 kb on + strandat 1437.309 kb on - strandat 1437.457 kb on - strand, within ABZR87_RS22645at 1437.457 kb on - strand, within ABZR87_RS22645at 1437.480 kb on + strand, within ABZR87_RS22645at 1437.480 kb on + strand, within ABZR87_RS22645at 1437.684 kb on - strandat 1437.759 kb on + strandat 1437.759 kb on + strandat 1437.759 kb on + strandat 1437.759 kb on + strandat 1437.760 kb on - strandat 1437.760 kb on - strandat 1437.760 kb on - strandat 1438.000 kb on + strandat 1438.000 kb on + strandat 1438.000 kb on + strandat 1438.001 kb on - strandat 1438.001 kb on - strandat 1438.228 kb on + strand, within ABZR87_RS22650at 1438.228 kb on + strand, within ABZR87_RS22650at 1438.228 kb on + strand, within ABZR87_RS22650at 1438.229 kb on - strand, within ABZR87_RS22650at 1438.477 kb on + strand, within ABZR87_RS22650

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB
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1,436,832 + +1.1
1,436,866 - +0.9
1,437,270 - +0.9
1,437,270 - -0.7
1,437,308 + -1.6
1,437,309 - -0.2
1,437,457 - ABZR87_RS22645 0.29 -2.8
1,437,457 - ABZR87_RS22645 0.29 -0.0
1,437,480 + ABZR87_RS22645 0.39 -1.2
1,437,480 + ABZR87_RS22645 0.39 -0.6
1,437,684 - -0.2
1,437,759 + -0.1
1,437,759 + +1.5
1,437,759 + +0.3
1,437,759 + +0.2
1,437,760 - +0.8
1,437,760 - -0.4
1,437,760 - -0.5
1,438,000 + -0.3
1,438,000 + +0.6
1,438,000 + +0.4
1,438,001 - +1.2
1,438,001 - -0.7
1,438,228 + ABZR87_RS22650 0.23 -0.3
1,438,228 + ABZR87_RS22650 0.23 +1.3
1,438,228 + ABZR87_RS22650 0.23 -0.9
1,438,229 - ABZR87_RS22650 0.23 -1.0
1,438,477 + ABZR87_RS22650 0.47 -0.1

Or see this region's nucleotide sequence