Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21990

Experiment: no_plant_soil sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21985 and ABZR87_RS21990 overlap by 118 nucleotidesABZR87_RS21990 and ABZR87_RS21995 are separated by 6 nucleotides ABZR87_RS21985: ABZR87_RS21985 - contractile injection system protein, VgrG/Pvc8 family, at 1,304,312 to 1,305,571 _RS21985 ABZR87_RS21990: ABZR87_RS21990 - hypothetical protein, at 1,305,454 to 1,306,416 _RS21990 ABZR87_RS21995: ABZR87_RS21995 - phage tail tape measure protein, at 1,306,423 to 1,308,375 _RS21995 Position (kb) 1305 1306 1307Strain fitness (log2 ratio) -3 -2 -1 0 1at 1304.493 kb on - strand, within ABZR87_RS21985at 1304.493 kb on - strand, within ABZR87_RS21985at 1304.523 kb on + strand, within ABZR87_RS21985at 1304.625 kb on + strand, within ABZR87_RS21985at 1304.776 kb on - strand, within ABZR87_RS21985at 1304.832 kb on + strand, within ABZR87_RS21985at 1304.832 kb on + strand, within ABZR87_RS21985at 1304.840 kb on - strand, within ABZR87_RS21985at 1304.840 kb on - strand, within ABZR87_RS21985at 1304.840 kb on - strand, within ABZR87_RS21985at 1304.903 kb on + strand, within ABZR87_RS21985at 1304.919 kb on + strand, within ABZR87_RS21985at 1304.919 kb on + strand, within ABZR87_RS21985at 1304.919 kb on + strand, within ABZR87_RS21985at 1304.920 kb on - strand, within ABZR87_RS21985at 1304.920 kb on - strand, within ABZR87_RS21985at 1305.043 kb on + strand, within ABZR87_RS21985at 1305.044 kb on - strand, within ABZR87_RS21985at 1305.047 kb on + strand, within ABZR87_RS21985at 1305.048 kb on - strand, within ABZR87_RS21985at 1305.123 kb on + strand, within ABZR87_RS21985at 1305.123 kb on + strand, within ABZR87_RS21985at 1305.123 kb on + strand, within ABZR87_RS21985at 1305.124 kb on - strand, within ABZR87_RS21985at 1305.143 kb on - strand, within ABZR87_RS21985at 1305.153 kb on + strand, within ABZR87_RS21985at 1305.274 kb on + strand, within ABZR87_RS21985at 1305.288 kb on + strand, within ABZR87_RS21985at 1305.587 kb on + strand, within ABZR87_RS21990at 1305.651 kb on - strand, within ABZR87_RS21990at 1305.651 kb on - strand, within ABZR87_RS21990at 1305.772 kb on - strand, within ABZR87_RS21990at 1305.816 kb on + strand, within ABZR87_RS21990at 1306.151 kb on + strand, within ABZR87_RS21990at 1306.152 kb on - strand, within ABZR87_RS21990at 1306.398 kb on + strandat 1306.562 kb on + strandat 1306.562 kb on + strandat 1306.669 kb on + strand, within ABZR87_RS21995at 1306.669 kb on + strand, within ABZR87_RS21995at 1306.677 kb on - strand, within ABZR87_RS21995at 1306.734 kb on + strand, within ABZR87_RS21995at 1306.734 kb on + strand, within ABZR87_RS21995at 1306.734 kb on + strand, within ABZR87_RS21995at 1306.755 kb on - strand, within ABZR87_RS21995at 1306.770 kb on - strand, within ABZR87_RS21995at 1306.779 kb on - strand, within ABZR87_RS21995at 1306.791 kb on + strand, within ABZR87_RS21995at 1306.791 kb on + strand, within ABZR87_RS21995at 1306.791 kb on + strand, within ABZR87_RS21995at 1306.971 kb on + strand, within ABZR87_RS21995at 1307.203 kb on - strand, within ABZR87_RS21995at 1307.228 kb on + strand, within ABZR87_RS21995at 1307.229 kb on - strand, within ABZR87_RS21995

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB
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1,304,493 - ABZR87_RS21985 0.14 +1.0
1,304,493 - ABZR87_RS21985 0.14 +0.6
1,304,523 + ABZR87_RS21985 0.17 -0.9
1,304,625 + ABZR87_RS21985 0.25 -0.9
1,304,776 - ABZR87_RS21985 0.37 +1.0
1,304,832 + ABZR87_RS21985 0.41 +0.4
1,304,832 + ABZR87_RS21985 0.41 +0.2
1,304,840 - ABZR87_RS21985 0.42 -1.8
1,304,840 - ABZR87_RS21985 0.42 -0.9
1,304,840 - ABZR87_RS21985 0.42 +0.7
1,304,903 + ABZR87_RS21985 0.47 +1.0
1,304,919 + ABZR87_RS21985 0.48 -0.9
1,304,919 + ABZR87_RS21985 0.48 -0.6
1,304,919 + ABZR87_RS21985 0.48 +0.9
1,304,920 - ABZR87_RS21985 0.48 +0.8
1,304,920 - ABZR87_RS21985 0.48 +0.8
1,305,043 + ABZR87_RS21985 0.58 +0.5
1,305,044 - ABZR87_RS21985 0.58 -2.4
1,305,047 + ABZR87_RS21985 0.58 -0.4
1,305,048 - ABZR87_RS21985 0.58 -0.2
1,305,123 + ABZR87_RS21985 0.64 -0.5
1,305,123 + ABZR87_RS21985 0.64 -1.6
1,305,123 + ABZR87_RS21985 0.64 +0.1
1,305,124 - ABZR87_RS21985 0.64 -2.9
1,305,143 - ABZR87_RS21985 0.66 +0.3
1,305,153 + ABZR87_RS21985 0.67 +0.7
1,305,274 + ABZR87_RS21985 0.76 +0.6
1,305,288 + ABZR87_RS21985 0.77 +0.9
1,305,587 + ABZR87_RS21990 0.14 +0.5
1,305,651 - ABZR87_RS21990 0.20 +0.2
1,305,651 - ABZR87_RS21990 0.20 -0.0
1,305,772 - ABZR87_RS21990 0.33 +0.1
1,305,816 + ABZR87_RS21990 0.38 +0.1
1,306,151 + ABZR87_RS21990 0.72 +0.9
1,306,152 - ABZR87_RS21990 0.72 +0.0
1,306,398 + -0.3
1,306,562 + +0.3
1,306,562 + -0.3
1,306,669 + ABZR87_RS21995 0.13 -0.8
1,306,669 + ABZR87_RS21995 0.13 +0.7
1,306,677 - ABZR87_RS21995 0.13 +0.3
1,306,734 + ABZR87_RS21995 0.16 -0.6
1,306,734 + ABZR87_RS21995 0.16 -0.0
1,306,734 + ABZR87_RS21995 0.16 +0.1
1,306,755 - ABZR87_RS21995 0.17 -0.6
1,306,770 - ABZR87_RS21995 0.18 -0.8
1,306,779 - ABZR87_RS21995 0.18 +0.8
1,306,791 + ABZR87_RS21995 0.19 -1.0
1,306,791 + ABZR87_RS21995 0.19 +0.5
1,306,791 + ABZR87_RS21995 0.19 -2.9
1,306,971 + ABZR87_RS21995 0.28 -0.0
1,307,203 - ABZR87_RS21995 0.40 +0.2
1,307,228 + ABZR87_RS21995 0.41 -0.6
1,307,229 - ABZR87_RS21995 0.41 -2.2

Or see this region's nucleotide sequence