Experiment: no_plant_soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21360 and ABZR87_RS21365 overlap by 4 nucleotides ABZR87_RS21365 and ABZR87_RS21370 are separated by 33 nucleotides
ABZR87_RS21360: ABZR87_RS21360 - ligase-associated DNA damage response DEXH box helicase, at 1,173,729 to 1,176,344
_RS21360
ABZR87_RS21365: ABZR87_RS21365 - ligase-associated DNA damage response endonuclease PdeM, at 1,176,341 to 1,177,000
_RS21365
ABZR87_RS21370: ABZR87_RS21370 - zinc-dependent alcohol dehydrogenase, at 1,177,034 to 1,178,203
_RS21370
Position (kb) 1176
1177
1178 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1175.341 kb on - strand, within ABZR87_RS21360 at 1175.694 kb on + strand, within ABZR87_RS21360 at 1175.925 kb on + strand, within ABZR87_RS21360 at 1175.926 kb on - strand, within ABZR87_RS21360 at 1175.926 kb on - strand, within ABZR87_RS21360 at 1175.926 kb on - strand, within ABZR87_RS21360 at 1176.340 kb on + strand at 1176.340 kb on + strand at 1176.340 kb on + strand at 1176.340 kb on + strand at 1176.341 kb on - strand at 1176.341 kb on - strand at 1176.341 kb on - strand at 1176.341 kb on - strand at 1176.794 kb on + strand, within ABZR87_RS21365 at 1176.795 kb on - strand, within ABZR87_RS21365 at 1176.991 kb on - strand at 1176.991 kb on - strand at 1176.999 kb on - strand at 1177.089 kb on + strand at 1177.089 kb on + strand at 1177.090 kb on - strand at 1177.090 kb on - strand at 1177.185 kb on + strand, within ABZR87_RS21370 at 1177.185 kb on + strand, within ABZR87_RS21370 at 1177.186 kb on - strand, within ABZR87_RS21370 at 1177.272 kb on + strand, within ABZR87_RS21370 at 1177.272 kb on + strand, within ABZR87_RS21370 at 1177.273 kb on - strand, within ABZR87_RS21370 at 1177.273 kb on - strand, within ABZR87_RS21370 at 1177.273 kb on - strand, within ABZR87_RS21370 at 1177.294 kb on + strand, within ABZR87_RS21370 at 1177.552 kb on + strand, within ABZR87_RS21370 at 1177.552 kb on + strand, within ABZR87_RS21370 at 1177.552 kb on + strand, within ABZR87_RS21370 at 1177.553 kb on - strand, within ABZR87_RS21370 at 1177.553 kb on - strand, within ABZR87_RS21370 at 1177.553 kb on - strand, within ABZR87_RS21370 at 1177.657 kb on + strand, within ABZR87_RS21370 at 1177.657 kb on + strand, within ABZR87_RS21370 at 1177.658 kb on - strand, within ABZR87_RS21370 at 1177.680 kb on + strand, within ABZR87_RS21370 at 1177.680 kb on + strand, within ABZR87_RS21370 at 1177.680 kb on + strand, within ABZR87_RS21370 at 1177.680 kb on + strand, within ABZR87_RS21370 at 1177.779 kb on + strand, within ABZR87_RS21370 at 1177.822 kb on - strand, within ABZR87_RS21370
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB remove 1,175,341 - ABZR87_RS21360 0.62 +0.9 1,175,694 + ABZR87_RS21360 0.75 +0.9 1,175,925 + ABZR87_RS21360 0.84 +0.8 1,175,926 - ABZR87_RS21360 0.84 -0.3 1,175,926 - ABZR87_RS21360 0.84 +2.6 1,175,926 - ABZR87_RS21360 0.84 -0.1 1,176,340 + -3.0 1,176,340 + -0.8 1,176,340 + -0.1 1,176,340 + +0.6 1,176,341 - +0.5 1,176,341 - +1.9 1,176,341 - -1.4 1,176,341 - -2.4 1,176,794 + ABZR87_RS21365 0.69 -2.7 1,176,795 - ABZR87_RS21365 0.69 -0.7 1,176,991 - -0.9 1,176,991 - -0.5 1,176,999 - -0.0 1,177,089 + +0.5 1,177,089 + +1.5 1,177,090 - +0.5 1,177,090 - -0.2 1,177,185 + ABZR87_RS21370 0.13 +0.1 1,177,185 + ABZR87_RS21370 0.13 -0.7 1,177,186 - ABZR87_RS21370 0.13 +1.8 1,177,272 + ABZR87_RS21370 0.20 +0.5 1,177,272 + ABZR87_RS21370 0.20 +0.9 1,177,273 - ABZR87_RS21370 0.20 -0.9 1,177,273 - ABZR87_RS21370 0.20 +0.2 1,177,273 - ABZR87_RS21370 0.20 -0.5 1,177,294 + ABZR87_RS21370 0.22 -0.0 1,177,552 + ABZR87_RS21370 0.44 +0.5 1,177,552 + ABZR87_RS21370 0.44 -0.6 1,177,552 + ABZR87_RS21370 0.44 -0.0 1,177,553 - ABZR87_RS21370 0.44 -0.7 1,177,553 - ABZR87_RS21370 0.44 +1.3 1,177,553 - ABZR87_RS21370 0.44 +0.5 1,177,657 + ABZR87_RS21370 0.53 -0.1 1,177,657 + ABZR87_RS21370 0.53 -0.4 1,177,658 - ABZR87_RS21370 0.53 -0.4 1,177,680 + ABZR87_RS21370 0.55 +1.8 1,177,680 + ABZR87_RS21370 0.55 -0.3 1,177,680 + ABZR87_RS21370 0.55 +0.4 1,177,680 + ABZR87_RS21370 0.55 +0.6 1,177,779 + ABZR87_RS21370 0.64 +0.1 1,177,822 - ABZR87_RS21370 0.67 -2.1
Or see this region's nucleotide sequence