Experiment: no_plant_soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21230 and ABZR87_RS21235 are separated by 86 nucleotides ABZR87_RS21235 and ABZR87_RS21240 are separated by 3 nucleotides ABZR87_RS21240 and ABZR87_RS21245 are separated by 20 nucleotides ABZR87_RS21245 and ABZR87_RS21250 overlap by 7 nucleotides
ABZR87_RS21230: ABZR87_RS21230 - 3-oxoadipate enol-lactonase, at 1,145,550 to 1,146,365
_RS21230
ABZR87_RS21235: ABZR87_RS21235 - TetR/AcrR family transcriptional regulator, at 1,146,452 to 1,147,090
_RS21235
ABZR87_RS21240: ABZR87_RS21240 - 1,2-phenylacetyl-CoA epoxidase subunit PaaE, at 1,147,094 to 1,148,194
_RS21240
ABZR87_RS21245: ABZR87_RS21245 - 1,2-phenylacetyl-CoA epoxidase subunit PaaD, at 1,148,215 to 1,148,727
_RS21245
ABZR87_RS21250: ABZR87_RS21250 - 1,2-phenylacetyl-CoA epoxidase subunit PaaC, at 1,148,721 to 1,149,521
_RS21250
Position (kb) 1147
1148
1149 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1146.417 kb on - strand at 1146.539 kb on + strand, within ABZR87_RS21235 at 1146.600 kb on - strand, within ABZR87_RS21235 at 1146.600 kb on - strand, within ABZR87_RS21235 at 1146.606 kb on - strand, within ABZR87_RS21235 at 1146.606 kb on - strand, within ABZR87_RS21235 at 1146.608 kb on + strand, within ABZR87_RS21235 at 1146.609 kb on - strand, within ABZR87_RS21235 at 1146.651 kb on - strand, within ABZR87_RS21235 at 1146.745 kb on + strand, within ABZR87_RS21235 at 1146.809 kb on + strand, within ABZR87_RS21235 at 1146.999 kb on - strand, within ABZR87_RS21235 at 1147.107 kb on + strand at 1147.267 kb on - strand, within ABZR87_RS21240 at 1147.645 kb on - strand, within ABZR87_RS21240 at 1147.729 kb on - strand, within ABZR87_RS21240 at 1147.825 kb on - strand, within ABZR87_RS21240 at 1147.825 kb on - strand, within ABZR87_RS21240 at 1147.857 kb on + strand, within ABZR87_RS21240 at 1147.857 kb on + strand, within ABZR87_RS21240 at 1147.858 kb on - strand, within ABZR87_RS21240 at 1147.984 kb on - strand, within ABZR87_RS21240 at 1148.010 kb on + strand, within ABZR87_RS21240 at 1148.010 kb on + strand, within ABZR87_RS21240 at 1148.011 kb on - strand, within ABZR87_RS21240 at 1148.083 kb on + strand, within ABZR87_RS21240 at 1148.083 kb on + strand, within ABZR87_RS21240 at 1148.220 kb on - strand at 1148.220 kb on - strand at 1148.220 kb on - strand at 1148.232 kb on - strand at 1148.265 kb on - strand at 1148.265 kb on - strand at 1148.576 kb on + strand, within ABZR87_RS21245 at 1148.722 kb on + strand at 1148.723 kb on - strand at 1148.723 kb on - strand at 1148.723 kb on - strand at 1148.821 kb on + strand, within ABZR87_RS21250 at 1148.821 kb on + strand, within ABZR87_RS21250 at 1148.822 kb on - strand, within ABZR87_RS21250 at 1148.975 kb on - strand, within ABZR87_RS21250 at 1148.975 kb on - strand, within ABZR87_RS21250 at 1149.170 kb on - strand, within ABZR87_RS21250 at 1149.170 kb on - strand, within ABZR87_RS21250
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB remove 1,146,417 - -0.4 1,146,539 + ABZR87_RS21235 0.14 -0.1 1,146,600 - ABZR87_RS21235 0.23 +0.4 1,146,600 - ABZR87_RS21235 0.23 -2.0 1,146,606 - ABZR87_RS21235 0.24 +0.2 1,146,606 - ABZR87_RS21235 0.24 -0.3 1,146,608 + ABZR87_RS21235 0.24 -1.1 1,146,609 - ABZR87_RS21235 0.25 +2.7 1,146,651 - ABZR87_RS21235 0.31 -0.1 1,146,745 + ABZR87_RS21235 0.46 -0.9 1,146,809 + ABZR87_RS21235 0.56 +0.2 1,146,999 - ABZR87_RS21235 0.86 -0.7 1,147,107 + -0.8 1,147,267 - ABZR87_RS21240 0.16 -1.5 1,147,645 - ABZR87_RS21240 0.50 -1.4 1,147,729 - ABZR87_RS21240 0.58 -1.1 1,147,825 - ABZR87_RS21240 0.66 +0.7 1,147,825 - ABZR87_RS21240 0.66 +0.3 1,147,857 + ABZR87_RS21240 0.69 -1.5 1,147,857 + ABZR87_RS21240 0.69 -1.0 1,147,858 - ABZR87_RS21240 0.69 -1.1 1,147,984 - ABZR87_RS21240 0.81 +0.0 1,148,010 + ABZR87_RS21240 0.83 -1.0 1,148,010 + ABZR87_RS21240 0.83 -0.5 1,148,011 - ABZR87_RS21240 0.83 +0.7 1,148,083 + ABZR87_RS21240 0.90 -2.3 1,148,083 + ABZR87_RS21240 0.90 -0.8 1,148,220 - -1.3 1,148,220 - -0.5 1,148,220 - -1.5 1,148,232 - -1.5 1,148,265 - -1.6 1,148,265 - -1.0 1,148,576 + ABZR87_RS21245 0.70 -0.4 1,148,722 + -0.0 1,148,723 - -0.8 1,148,723 - -0.2 1,148,723 - -0.2 1,148,821 + ABZR87_RS21250 0.12 +0.3 1,148,821 + ABZR87_RS21250 0.12 -0.3 1,148,822 - ABZR87_RS21250 0.13 +0.8 1,148,975 - ABZR87_RS21250 0.32 -0.4 1,148,975 - ABZR87_RS21250 0.32 -0.2 1,149,170 - ABZR87_RS21250 0.56 +0.1 1,149,170 - ABZR87_RS21250 0.56 -0.5
Or see this region's nucleotide sequence