Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20680

Experiment: no_plant_soil sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS20670 and ABZR87_RS20675 are separated by 4 nucleotidesABZR87_RS20675 and ABZR87_RS20680 are separated by 32 nucleotidesABZR87_RS20680 and ABZR87_RS20685 overlap by 8 nucleotides ABZR87_RS20670: ABZR87_RS20670 - alpha/beta hydrolase, at 1,025,571 to 1,026,473 _RS20670 ABZR87_RS20675: ABZR87_RS20675 - cupin domain-containing protein, at 1,026,478 to 1,027,014 _RS20675 ABZR87_RS20680: ABZR87_RS20680 - SDR family oxidoreductase, at 1,027,047 to 1,027,820 _RS20680 ABZR87_RS20685: ABZR87_RS20685 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 1,027,813 to 1,028,880 _RS20685 Position (kb) 1027 1028Strain fitness (log2 ratio) -3 -2 -1 0 1at 1026.079 kb on + strand, within ABZR87_RS20670at 1026.080 kb on - strand, within ABZR87_RS20670at 1026.080 kb on - strand, within ABZR87_RS20670at 1026.173 kb on - strand, within ABZR87_RS20670at 1026.221 kb on - strand, within ABZR87_RS20670at 1026.516 kb on - strandat 1026.836 kb on + strand, within ABZR87_RS20675at 1026.836 kb on + strand, within ABZR87_RS20675at 1026.836 kb on + strand, within ABZR87_RS20675at 1026.836 kb on + strand, within ABZR87_RS20675at 1026.857 kb on + strand, within ABZR87_RS20675at 1026.903 kb on - strand, within ABZR87_RS20675at 1027.019 kb on + strandat 1027.020 kb on - strandat 1027.048 kb on + strandat 1027.048 kb on + strandat 1027.049 kb on - strandat 1027.211 kb on - strand, within ABZR87_RS20680at 1027.211 kb on - strand, within ABZR87_RS20680at 1027.211 kb on - strand, within ABZR87_RS20680at 1027.897 kb on + strandat 1027.898 kb on - strandat 1027.898 kb on - strandat 1028.033 kb on + strand, within ABZR87_RS20685at 1028.034 kb on - strand, within ABZR87_RS20685at 1028.091 kb on - strand, within ABZR87_RS20685at 1028.342 kb on + strand, within ABZR87_RS20685at 1028.382 kb on - strand, within ABZR87_RS20685at 1028.387 kb on + strand, within ABZR87_RS20685at 1028.388 kb on - strand, within ABZR87_RS20685at 1028.388 kb on - strand, within ABZR87_RS20685at 1028.607 kb on + strand, within ABZR87_RS20685at 1028.607 kb on + strand, within ABZR87_RS20685at 1028.608 kb on - strand, within ABZR87_RS20685at 1028.608 kb on - strand, within ABZR87_RS20685at 1028.608 kb on - strand, within ABZR87_RS20685at 1028.636 kb on + strand, within ABZR87_RS20685at 1028.636 kb on + strand, within ABZR87_RS20685

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB
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1,026,079 + ABZR87_RS20670 0.56 -0.5
1,026,080 - ABZR87_RS20670 0.56 -0.7
1,026,080 - ABZR87_RS20670 0.56 -0.9
1,026,173 - ABZR87_RS20670 0.67 -0.8
1,026,221 - ABZR87_RS20670 0.72 +0.5
1,026,516 - -1.7
1,026,836 + ABZR87_RS20675 0.67 -1.9
1,026,836 + ABZR87_RS20675 0.67 +0.1
1,026,836 + ABZR87_RS20675 0.67 +0.0
1,026,836 + ABZR87_RS20675 0.67 -2.8
1,026,857 + ABZR87_RS20675 0.71 -0.3
1,026,903 - ABZR87_RS20675 0.79 +1.2
1,027,019 + -0.3
1,027,020 - -2.1
1,027,048 + +0.3
1,027,048 + +0.4
1,027,049 - -3.7
1,027,211 - ABZR87_RS20680 0.21 -3.3
1,027,211 - ABZR87_RS20680 0.21 -1.5
1,027,211 - ABZR87_RS20680 0.21 -1.0
1,027,897 + -0.5
1,027,898 - -1.3
1,027,898 - -0.6
1,028,033 + ABZR87_RS20685 0.21 +0.0
1,028,034 - ABZR87_RS20685 0.21 -0.7
1,028,091 - ABZR87_RS20685 0.26 +0.5
1,028,342 + ABZR87_RS20685 0.50 -0.3
1,028,382 - ABZR87_RS20685 0.53 -0.2
1,028,387 + ABZR87_RS20685 0.54 +1.3
1,028,388 - ABZR87_RS20685 0.54 -1.5
1,028,388 - ABZR87_RS20685 0.54 -1.5
1,028,607 + ABZR87_RS20685 0.74 +0.2
1,028,607 + ABZR87_RS20685 0.74 +1.2
1,028,608 - ABZR87_RS20685 0.74 -0.9
1,028,608 - ABZR87_RS20685 0.74 +0.7
1,028,608 - ABZR87_RS20685 0.74 -0.3
1,028,636 + ABZR87_RS20685 0.77 -0.1
1,028,636 + ABZR87_RS20685 0.77 -0.6

Or see this region's nucleotide sequence