Experiment: no_plant_soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20670 and ABZR87_RS20675 are separated by 4 nucleotides ABZR87_RS20675 and ABZR87_RS20680 are separated by 32 nucleotides ABZR87_RS20680 and ABZR87_RS20685 overlap by 8 nucleotides
ABZR87_RS20670: ABZR87_RS20670 - alpha/beta hydrolase, at 1,025,571 to 1,026,473
_RS20670
ABZR87_RS20675: ABZR87_RS20675 - cupin domain-containing protein, at 1,026,478 to 1,027,014
_RS20675
ABZR87_RS20680: ABZR87_RS20680 - SDR family oxidoreductase, at 1,027,047 to 1,027,820
_RS20680
ABZR87_RS20685: ABZR87_RS20685 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 1,027,813 to 1,028,880
_RS20685
Position (kb)
1027
1028 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1026.079 kb on + strand, within ABZR87_RS20670 at 1026.080 kb on - strand, within ABZR87_RS20670 at 1026.080 kb on - strand, within ABZR87_RS20670 at 1026.173 kb on - strand, within ABZR87_RS20670 at 1026.221 kb on - strand, within ABZR87_RS20670 at 1026.516 kb on - strand at 1026.836 kb on + strand, within ABZR87_RS20675 at 1026.836 kb on + strand, within ABZR87_RS20675 at 1026.836 kb on + strand, within ABZR87_RS20675 at 1026.836 kb on + strand, within ABZR87_RS20675 at 1026.857 kb on + strand, within ABZR87_RS20675 at 1026.903 kb on - strand, within ABZR87_RS20675 at 1027.019 kb on + strand at 1027.020 kb on - strand at 1027.048 kb on + strand at 1027.048 kb on + strand at 1027.049 kb on - strand at 1027.211 kb on - strand, within ABZR87_RS20680 at 1027.211 kb on - strand, within ABZR87_RS20680 at 1027.211 kb on - strand, within ABZR87_RS20680 at 1027.897 kb on + strand at 1027.898 kb on - strand at 1027.898 kb on - strand at 1028.033 kb on + strand, within ABZR87_RS20685 at 1028.034 kb on - strand, within ABZR87_RS20685 at 1028.091 kb on - strand, within ABZR87_RS20685 at 1028.342 kb on + strand, within ABZR87_RS20685 at 1028.382 kb on - strand, within ABZR87_RS20685 at 1028.387 kb on + strand, within ABZR87_RS20685 at 1028.388 kb on - strand, within ABZR87_RS20685 at 1028.388 kb on - strand, within ABZR87_RS20685 at 1028.607 kb on + strand, within ABZR87_RS20685 at 1028.607 kb on + strand, within ABZR87_RS20685 at 1028.608 kb on - strand, within ABZR87_RS20685 at 1028.608 kb on - strand, within ABZR87_RS20685 at 1028.608 kb on - strand, within ABZR87_RS20685 at 1028.636 kb on + strand, within ABZR87_RS20685 at 1028.636 kb on + strand, within ABZR87_RS20685
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB remove 1,026,079 + ABZR87_RS20670 0.56 -0.5 1,026,080 - ABZR87_RS20670 0.56 -0.7 1,026,080 - ABZR87_RS20670 0.56 -0.9 1,026,173 - ABZR87_RS20670 0.67 -0.8 1,026,221 - ABZR87_RS20670 0.72 +0.5 1,026,516 - -1.7 1,026,836 + ABZR87_RS20675 0.67 -1.9 1,026,836 + ABZR87_RS20675 0.67 +0.1 1,026,836 + ABZR87_RS20675 0.67 +0.0 1,026,836 + ABZR87_RS20675 0.67 -2.8 1,026,857 + ABZR87_RS20675 0.71 -0.3 1,026,903 - ABZR87_RS20675 0.79 +1.2 1,027,019 + -0.3 1,027,020 - -2.1 1,027,048 + +0.3 1,027,048 + +0.4 1,027,049 - -3.7 1,027,211 - ABZR87_RS20680 0.21 -3.3 1,027,211 - ABZR87_RS20680 0.21 -1.5 1,027,211 - ABZR87_RS20680 0.21 -1.0 1,027,897 + -0.5 1,027,898 - -1.3 1,027,898 - -0.6 1,028,033 + ABZR87_RS20685 0.21 +0.0 1,028,034 - ABZR87_RS20685 0.21 -0.7 1,028,091 - ABZR87_RS20685 0.26 +0.5 1,028,342 + ABZR87_RS20685 0.50 -0.3 1,028,382 - ABZR87_RS20685 0.53 -0.2 1,028,387 + ABZR87_RS20685 0.54 +1.3 1,028,388 - ABZR87_RS20685 0.54 -1.5 1,028,388 - ABZR87_RS20685 0.54 -1.5 1,028,607 + ABZR87_RS20685 0.74 +0.2 1,028,607 + ABZR87_RS20685 0.74 +1.2 1,028,608 - ABZR87_RS20685 0.74 -0.9 1,028,608 - ABZR87_RS20685 0.74 +0.7 1,028,608 - ABZR87_RS20685 0.74 -0.3 1,028,636 + ABZR87_RS20685 0.77 -0.1 1,028,636 + ABZR87_RS20685 0.77 -0.6
Or see this region's nucleotide sequence