Experiment: no_plant_soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20530 and ABZR87_RS20535 are separated by 128 nucleotides ABZR87_RS20535 and ABZR87_RS20540 are separated by 55 nucleotides
ABZR87_RS20530: ABZR87_RS20530 - Crp/Fnr family transcriptional regulator, at 991,980 to 992,711
_RS20530
ABZR87_RS20535: ABZR87_RS20535 - elongation factor G, at 992,840 to 994,942
_RS20535
ABZR87_RS20540: ABZR87_RS20540 - LysR family transcriptional regulator, at 994,998 to 995,912
_RS20540
Position (kb) 992
993
994
995 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 991.888 kb on + strand at 991.888 kb on + strand at 991.889 kb on - strand at 991.889 kb on - strand at 991.889 kb on - strand at 991.904 kb on + strand at 992.026 kb on - strand at 992.166 kb on + strand, within ABZR87_RS20530 at 992.272 kb on + strand, within ABZR87_RS20530 at 992.273 kb on - strand, within ABZR87_RS20530 at 992.318 kb on + strand, within ABZR87_RS20530 at 992.333 kb on + strand, within ABZR87_RS20530 at 992.333 kb on + strand, within ABZR87_RS20530 at 992.333 kb on + strand, within ABZR87_RS20530 at 992.333 kb on + strand, within ABZR87_RS20530 at 992.334 kb on - strand, within ABZR87_RS20530 at 992.488 kb on + strand, within ABZR87_RS20530 at 992.488 kb on + strand, within ABZR87_RS20530 at 992.488 kb on + strand, within ABZR87_RS20530 at 992.488 kb on + strand, within ABZR87_RS20530 at 992.489 kb on - strand, within ABZR87_RS20530 at 992.489 kb on - strand, within ABZR87_RS20530 at 992.489 kb on - strand, within ABZR87_RS20530 at 992.489 kb on - strand, within ABZR87_RS20530 at 992.489 kb on - strand, within ABZR87_RS20530 at 992.691 kb on + strand at 992.691 kb on + strand at 992.692 kb on - strand at 992.692 kb on - strand at 992.724 kb on + strand at 992.725 kb on - strand at 992.725 kb on - strand at 992.730 kb on + strand at 992.730 kb on + strand at 992.756 kb on + strand at 992.756 kb on + strand at 992.756 kb on + strand at 992.756 kb on + strand at 992.756 kb on + strand at 992.756 kb on + strand at 992.756 kb on + strand at 992.756 kb on + strand at 992.756 kb on + strand at 992.756 kb on + strand at 992.757 kb on - strand at 992.757 kb on - strand at 992.757 kb on - strand at 992.757 kb on - strand at 992.758 kb on + strand at 992.758 kb on + strand at 992.758 kb on + strand at 992.758 kb on + strand at 992.759 kb on - strand at 992.759 kb on - strand at 992.759 kb on - strand at 992.759 kb on - strand at 992.936 kb on + strand at 992.936 kb on + strand at 992.937 kb on - strand at 992.958 kb on + strand at 993.176 kb on + strand, within ABZR87_RS20535 at 993.176 kb on + strand, within ABZR87_RS20535 at 993.236 kb on + strand, within ABZR87_RS20535 at 993.236 kb on + strand, within ABZR87_RS20535 at 993.236 kb on + strand, within ABZR87_RS20535 at 993.236 kb on + strand, within ABZR87_RS20535 at 993.236 kb on + strand, within ABZR87_RS20535 at 993.236 kb on + strand, within ABZR87_RS20535 at 993.237 kb on - strand, within ABZR87_RS20535 at 993.237 kb on - strand, within ABZR87_RS20535 at 993.237 kb on - strand, within ABZR87_RS20535 at 993.237 kb on - strand, within ABZR87_RS20535 at 993.237 kb on - strand, within ABZR87_RS20535 at 993.237 kb on - strand, within ABZR87_RS20535 at 993.450 kb on - strand, within ABZR87_RS20535 at 993.548 kb on + strand, within ABZR87_RS20535 at 993.548 kb on + strand, within ABZR87_RS20535 at 993.549 kb on - strand, within ABZR87_RS20535 at 993.549 kb on - strand, within ABZR87_RS20535 at 993.549 kb on - strand, within ABZR87_RS20535 at 993.692 kb on + strand, within ABZR87_RS20535 at 993.692 kb on + strand, within ABZR87_RS20535 at 993.692 kb on + strand, within ABZR87_RS20535 at 993.692 kb on + strand, within ABZR87_RS20535 at 993.693 kb on - strand, within ABZR87_RS20535 at 993.693 kb on - strand, within ABZR87_RS20535 at 993.693 kb on - strand, within ABZR87_RS20535 at 993.849 kb on - strand, within ABZR87_RS20535 at 993.881 kb on + strand, within ABZR87_RS20535 at 993.881 kb on + strand, within ABZR87_RS20535 at 993.882 kb on - strand, within ABZR87_RS20535 at 993.882 kb on - strand, within ABZR87_RS20535 at 993.882 kb on - strand, within ABZR87_RS20535 at 994.421 kb on + strand, within ABZR87_RS20535 at 994.422 kb on - strand, within ABZR87_RS20535 at 994.568 kb on + strand, within ABZR87_RS20535 at 994.568 kb on + strand, within ABZR87_RS20535 at 994.569 kb on - strand, within ABZR87_RS20535 at 994.569 kb on - strand, within ABZR87_RS20535 at 994.569 kb on - strand, within ABZR87_RS20535 at 994.700 kb on + strand, within ABZR87_RS20535 at 994.700 kb on + strand, within ABZR87_RS20535 at 994.865 kb on + strand at 994.866 kb on - strand at 994.866 kb on - strand at 994.866 kb on - strand at 994.866 kb on - strand at 994.866 kb on - strand at 994.887 kb on - strand at 994.973 kb on + strand at 994.999 kb on + strand at 995.000 kb on - strand at 995.000 kb on - strand at 995.033 kb on + strand at 995.034 kb on - strand at 995.060 kb on - strand at 995.074 kb on + strand at 995.075 kb on - strand at 995.083 kb on + strand at 995.083 kb on + strand at 995.084 kb on - strand at 995.314 kb on + strand, within ABZR87_RS20540 at 995.314 kb on + strand, within ABZR87_RS20540 at 995.314 kb on + strand, within ABZR87_RS20540 at 995.315 kb on - strand, within ABZR87_RS20540 at 995.315 kb on - strand, within ABZR87_RS20540 at 995.315 kb on - strand, within ABZR87_RS20540 at 995.315 kb on - strand, within ABZR87_RS20540 at 995.315 kb on - strand, within ABZR87_RS20540 at 995.315 kb on - strand, within ABZR87_RS20540 at 995.380 kb on + strand, within ABZR87_RS20540 at 995.380 kb on + strand, within ABZR87_RS20540 at 995.380 kb on + strand, within ABZR87_RS20540 at 995.380 kb on + strand, within ABZR87_RS20540 at 995.704 kb on + strand, within ABZR87_RS20540 at 995.704 kb on + strand, within ABZR87_RS20540 at 995.879 kb on + strand at 995.879 kb on + strand at 995.880 kb on - strand at 995.880 kb on - strand at 995.935 kb on + strand at 995.936 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB remove 991,888 + -2.1 991,888 + -0.6 991,889 - +0.3 991,889 - +1.0 991,889 - -1.3 991,904 + +0.3 992,026 - -0.8 992,166 + ABZR87_RS20530 0.25 -0.2 992,272 + ABZR87_RS20530 0.40 -0.2 992,273 - ABZR87_RS20530 0.40 +0.0 992,318 + ABZR87_RS20530 0.46 +0.2 992,333 + ABZR87_RS20530 0.48 -0.1 992,333 + ABZR87_RS20530 0.48 -0.4 992,333 + ABZR87_RS20530 0.48 -2.1 992,333 + ABZR87_RS20530 0.48 +0.9 992,334 - ABZR87_RS20530 0.48 -1.4 992,488 + ABZR87_RS20530 0.69 +1.4 992,488 + ABZR87_RS20530 0.69 -0.2 992,488 + ABZR87_RS20530 0.69 +1.0 992,488 + ABZR87_RS20530 0.69 -1.0 992,489 - ABZR87_RS20530 0.70 -1.1 992,489 - ABZR87_RS20530 0.70 +0.2 992,489 - ABZR87_RS20530 0.70 +0.1 992,489 - ABZR87_RS20530 0.70 -1.1 992,489 - ABZR87_RS20530 0.70 +1.6 992,691 + +2.3 992,691 + -0.9 992,692 - -0.8 992,692 - -1.0 992,724 + -2.3 992,725 - +0.4 992,725 - -0.8 992,730 + -0.7 992,730 + -0.4 992,756 + +0.8 992,756 + -1.5 992,756 + -0.3 992,756 + -0.2 992,756 + -2.0 992,756 + -1.4 992,756 + +0.5 992,756 + -0.3 992,756 + -1.1 992,756 + -0.1 992,757 - +0.5 992,757 - -0.5 992,757 - -0.3 992,757 - +0.8 992,758 + -0.7 992,758 + -0.2 992,758 + +0.2 992,758 + +0.1 992,759 - +1.0 992,759 - +0.4 992,759 - +1.5 992,759 - +0.7 992,936 + +0.3 992,936 + -1.1 992,937 - -1.3 992,958 + -0.7 993,176 + ABZR87_RS20535 0.16 -1.6 993,176 + ABZR87_RS20535 0.16 -0.7 993,236 + ABZR87_RS20535 0.19 -0.1 993,236 + ABZR87_RS20535 0.19 -0.5 993,236 + ABZR87_RS20535 0.19 -1.2 993,236 + ABZR87_RS20535 0.19 +0.1 993,236 + ABZR87_RS20535 0.19 -1.4 993,236 + ABZR87_RS20535 0.19 -0.6 993,237 - ABZR87_RS20535 0.19 -3.6 993,237 - ABZR87_RS20535 0.19 -1.6 993,237 - ABZR87_RS20535 0.19 -1.0 993,237 - ABZR87_RS20535 0.19 -2.0 993,237 - ABZR87_RS20535 0.19 -1.2 993,237 - ABZR87_RS20535 0.19 -1.7 993,450 - ABZR87_RS20535 0.29 -1.9 993,548 + ABZR87_RS20535 0.34 -0.6 993,548 + ABZR87_RS20535 0.34 -1.0 993,549 - ABZR87_RS20535 0.34 -0.4 993,549 - ABZR87_RS20535 0.34 -0.4 993,549 - ABZR87_RS20535 0.34 -0.1 993,692 + ABZR87_RS20535 0.41 -0.6 993,692 + ABZR87_RS20535 0.41 -1.7 993,692 + ABZR87_RS20535 0.41 -3.1 993,692 + ABZR87_RS20535 0.41 -0.6 993,693 - ABZR87_RS20535 0.41 -0.4 993,693 - ABZR87_RS20535 0.41 -1.4 993,693 - ABZR87_RS20535 0.41 -2.1 993,849 - ABZR87_RS20535 0.48 -3.2 993,881 + ABZR87_RS20535 0.50 -0.6 993,881 + ABZR87_RS20535 0.50 -0.4 993,882 - ABZR87_RS20535 0.50 -2.5 993,882 - ABZR87_RS20535 0.50 -0.4 993,882 - ABZR87_RS20535 0.50 -3.1 994,421 + ABZR87_RS20535 0.75 -1.3 994,422 - ABZR87_RS20535 0.75 +0.1 994,568 + ABZR87_RS20535 0.82 -1.8 994,568 + ABZR87_RS20535 0.82 -0.2 994,569 - ABZR87_RS20535 0.82 +0.7 994,569 - ABZR87_RS20535 0.82 -0.8 994,569 - ABZR87_RS20535 0.82 -0.7 994,700 + ABZR87_RS20535 0.88 -1.3 994,700 + ABZR87_RS20535 0.88 -0.9 994,865 + -0.8 994,866 - -1.2 994,866 - -0.9 994,866 - -2.7 994,866 - -1.0 994,866 - -2.7 994,887 - -2.5 994,973 + +0.1 994,999 + -1.9 995,000 - +0.6 995,000 - +0.5 995,033 + -0.3 995,034 - -0.0 995,060 - -0.8 995,074 + -0.5 995,075 - +0.2 995,083 + -0.3 995,083 + +0.1 995,084 - -0.4 995,314 + ABZR87_RS20540 0.35 +0.0 995,314 + ABZR87_RS20540 0.35 +0.6 995,314 + ABZR87_RS20540 0.35 -0.3 995,315 - ABZR87_RS20540 0.35 +0.1 995,315 - ABZR87_RS20540 0.35 +1.0 995,315 - ABZR87_RS20540 0.35 +0.0 995,315 - ABZR87_RS20540 0.35 +1.5 995,315 - ABZR87_RS20540 0.35 -0.1 995,315 - ABZR87_RS20540 0.35 -0.2 995,380 + ABZR87_RS20540 0.42 -2.0 995,380 + ABZR87_RS20540 0.42 +0.2 995,380 + ABZR87_RS20540 0.42 +0.3 995,380 + ABZR87_RS20540 0.42 -0.3 995,704 + ABZR87_RS20540 0.77 -0.7 995,704 + ABZR87_RS20540 0.77 -0.5 995,879 + -0.7 995,879 + +0.6 995,880 - -0.5 995,880 - +1.6 995,935 + +0.6 995,936 - -1.1
Or see this region's nucleotide sequence