Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20405

Experiment: no_plant_soil sample 3; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS20395 and ABZR87_RS20400 are separated by 60 nucleotidesABZR87_RS20400 and ABZR87_RS20405 overlap by 4 nucleotidesABZR87_RS20405 and ABZR87_RS20410 are separated by 394 nucleotides ABZR87_RS20395: ABZR87_RS20395 - acyl-CoA dehydrogenase family protein, at 963,552 to 964,760 _RS20395 ABZR87_RS20400: ABZR87_RS20400 - cysteine dioxygenase, at 964,821 to 965,489 _RS20400 ABZR87_RS20405: ABZR87_RS20405 - rhodanese-related sulfurtransferase, at 965,486 to 967,126 _RS20405 ABZR87_RS20410: ABZR87_RS20410 - EamA family transporter, at 967,521 to 968,408 _RS20410 Position (kb) 965 966 967 968Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 964.489 kb on + strand, within ABZR87_RS20395at 964.579 kb on - strand, within ABZR87_RS20395at 964.856 kb on + strandat 964.857 kb on - strandat 965.035 kb on - strand, within ABZR87_RS20400at 965.035 kb on - strand, within ABZR87_RS20400at 965.193 kb on + strand, within ABZR87_RS20400at 965.392 kb on - strand, within ABZR87_RS20400at 965.393 kb on + strand, within ABZR87_RS20400at 965.393 kb on + strand, within ABZR87_RS20400at 965.393 kb on + strand, within ABZR87_RS20400at 965.561 kb on + strandat 965.633 kb on + strandat 965.634 kb on - strandat 965.634 kb on - strandat 965.798 kb on + strand, within ABZR87_RS20405at 965.799 kb on - strand, within ABZR87_RS20405at 965.799 kb on - strand, within ABZR87_RS20405at 965.800 kb on + strand, within ABZR87_RS20405at 965.800 kb on + strand, within ABZR87_RS20405at 965.800 kb on + strand, within ABZR87_RS20405at 965.801 kb on - strand, within ABZR87_RS20405at 965.801 kb on - strand, within ABZR87_RS20405at 965.810 kb on + strand, within ABZR87_RS20405at 965.810 kb on + strand, within ABZR87_RS20405at 965.900 kb on + strand, within ABZR87_RS20405at 965.900 kb on + strand, within ABZR87_RS20405at 965.901 kb on - strand, within ABZR87_RS20405at 965.901 kb on - strand, within ABZR87_RS20405at 966.000 kb on - strand, within ABZR87_RS20405at 966.000 kb on - strand, within ABZR87_RS20405at 966.110 kb on - strand, within ABZR87_RS20405at 966.110 kb on - strand, within ABZR87_RS20405at 966.387 kb on - strand, within ABZR87_RS20405at 966.399 kb on + strand, within ABZR87_RS20405at 966.399 kb on + strand, within ABZR87_RS20405at 966.399 kb on + strand, within ABZR87_RS20405at 966.399 kb on + strand, within ABZR87_RS20405at 966.399 kb on + strand, within ABZR87_RS20405at 966.400 kb on - strand, within ABZR87_RS20405at 966.400 kb on - strand, within ABZR87_RS20405at 966.400 kb on - strand, within ABZR87_RS20405at 966.416 kb on + strand, within ABZR87_RS20405at 966.416 kb on + strand, within ABZR87_RS20405at 966.584 kb on + strand, within ABZR87_RS20405at 966.584 kb on + strand, within ABZR87_RS20405at 966.584 kb on + strand, within ABZR87_RS20405at 966.585 kb on - strand, within ABZR87_RS20405at 966.585 kb on - strand, within ABZR87_RS20405at 966.746 kb on + strand, within ABZR87_RS20405at 966.746 kb on + strand, within ABZR87_RS20405at 966.747 kb on - strand, within ABZR87_RS20405at 966.747 kb on - strand, within ABZR87_RS20405at 966.747 kb on - strand, within ABZR87_RS20405at 966.747 kb on - strand, within ABZR87_RS20405at 966.747 kb on - strand, within ABZR87_RS20405at 966.747 kb on - strand, within ABZR87_RS20405at 966.747 kb on - strand, within ABZR87_RS20405at 966.760 kb on + strand, within ABZR87_RS20405at 966.833 kb on + strand, within ABZR87_RS20405at 966.834 kb on - strand, within ABZR87_RS20405at 966.834 kb on - strand, within ABZR87_RS20405at 966.918 kb on + strand, within ABZR87_RS20405at 966.919 kb on - strand, within ABZR87_RS20405at 966.919 kb on - strand, within ABZR87_RS20405at 966.919 kb on - strand, within ABZR87_RS20405at 966.929 kb on - strand, within ABZR87_RS20405at 967.016 kb on + strandat 967.016 kb on + strandat 967.016 kb on + strandat 967.055 kb on + strandat 967.055 kb on + strandat 967.056 kb on - strandat 967.056 kb on - strandat 967.280 kb on + strandat 967.281 kb on - strandat 967.408 kb on + strandat 967.408 kb on + strandat 967.408 kb on + strandat 967.409 kb on - strandat 967.409 kb on - strandat 967.409 kb on - strandat 967.409 kb on - strandat 967.489 kb on + strandat 967.489 kb on + strandat 967.489 kb on + strandat 967.490 kb on - strandat 967.557 kb on + strandat 967.557 kb on + strandat 967.558 kb on - strandat 967.558 kb on - strandat 967.558 kb on - strandat 967.558 kb on - strandat 967.558 kb on - strandat 967.578 kb on + strandat 967.578 kb on + strandat 967.578 kb on + strandat 967.578 kb on + strandat 967.579 kb on - strandat 967.579 kb on - strandat 967.579 kb on - strandat 967.579 kb on - strandat 967.888 kb on - strand, within ABZR87_RS20410at 967.888 kb on - strand, within ABZR87_RS20410at 968.062 kb on + strand, within ABZR87_RS20410at 968.062 kb on + strand, within ABZR87_RS20410

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB
remove
964,489 + ABZR87_RS20395 0.78 -1.1
964,579 - ABZR87_RS20395 0.85 +0.3
964,856 + +0.4
964,857 - -0.9
965,035 - ABZR87_RS20400 0.32 -0.3
965,035 - ABZR87_RS20400 0.32 -1.5
965,193 + ABZR87_RS20400 0.56 -0.3
965,392 - ABZR87_RS20400 0.85 -1.2
965,393 + ABZR87_RS20400 0.86 +0.5
965,393 + ABZR87_RS20400 0.86 +0.3
965,393 + ABZR87_RS20400 0.86 -0.2
965,561 + -0.6
965,633 + +0.3
965,634 - -0.4
965,634 - -0.5
965,798 + ABZR87_RS20405 0.19 +0.8
965,799 - ABZR87_RS20405 0.19 +0.4
965,799 - ABZR87_RS20405 0.19 +0.0
965,800 + ABZR87_RS20405 0.19 -0.5
965,800 + ABZR87_RS20405 0.19 -0.7
965,800 + ABZR87_RS20405 0.19 -2.3
965,801 - ABZR87_RS20405 0.19 -0.4
965,801 - ABZR87_RS20405 0.19 +0.7
965,810 + ABZR87_RS20405 0.20 +0.5
965,810 + ABZR87_RS20405 0.20 -0.9
965,900 + ABZR87_RS20405 0.25 +0.5
965,900 + ABZR87_RS20405 0.25 +0.2
965,901 - ABZR87_RS20405 0.25 -0.7
965,901 - ABZR87_RS20405 0.25 +0.4
966,000 - ABZR87_RS20405 0.31 -1.0
966,000 - ABZR87_RS20405 0.31 -0.3
966,110 - ABZR87_RS20405 0.38 -0.7
966,110 - ABZR87_RS20405 0.38 +0.5
966,387 - ABZR87_RS20405 0.55 -2.5
966,399 + ABZR87_RS20405 0.56 +0.4
966,399 + ABZR87_RS20405 0.56 -1.3
966,399 + ABZR87_RS20405 0.56 -0.4
966,399 + ABZR87_RS20405 0.56 -1.2
966,399 + ABZR87_RS20405 0.56 +0.0
966,400 - ABZR87_RS20405 0.56 +0.1
966,400 - ABZR87_RS20405 0.56 -0.6
966,400 - ABZR87_RS20405 0.56 -0.9
966,416 + ABZR87_RS20405 0.57 +1.4
966,416 + ABZR87_RS20405 0.57 +0.3
966,584 + ABZR87_RS20405 0.67 -1.1
966,584 + ABZR87_RS20405 0.67 +0.6
966,584 + ABZR87_RS20405 0.67 +0.7
966,585 - ABZR87_RS20405 0.67 -0.1
966,585 - ABZR87_RS20405 0.67 +0.7
966,746 + ABZR87_RS20405 0.77 -0.8
966,746 + ABZR87_RS20405 0.77 +2.8
966,747 - ABZR87_RS20405 0.77 +0.0
966,747 - ABZR87_RS20405 0.77 +0.3
966,747 - ABZR87_RS20405 0.77 +0.5
966,747 - ABZR87_RS20405 0.77 +0.9
966,747 - ABZR87_RS20405 0.77 -1.1
966,747 - ABZR87_RS20405 0.77 -0.7
966,747 - ABZR87_RS20405 0.77 -0.5
966,760 + ABZR87_RS20405 0.78 -0.4
966,833 + ABZR87_RS20405 0.82 -0.6
966,834 - ABZR87_RS20405 0.82 -0.9
966,834 - ABZR87_RS20405 0.82 -0.8
966,918 + ABZR87_RS20405 0.87 -0.8
966,919 - ABZR87_RS20405 0.87 -1.5
966,919 - ABZR87_RS20405 0.87 +0.9
966,919 - ABZR87_RS20405 0.87 -0.1
966,929 - ABZR87_RS20405 0.88 +0.2
967,016 + -1.7
967,016 + +0.6
967,016 + +0.1
967,055 + +0.8
967,055 + +0.7
967,056 - -0.5
967,056 - +1.0
967,280 + -3.0
967,281 - +0.4
967,408 + -0.4
967,408 + -1.7
967,408 + +0.4
967,409 - -0.4
967,409 - +0.6
967,409 - +0.2
967,409 - -0.7
967,489 + +0.1
967,489 + +0.8
967,489 + -1.5
967,490 - +0.6
967,557 + +0.6
967,557 + +0.2
967,558 - -0.0
967,558 - +0.5
967,558 - +0.3
967,558 - +0.4
967,558 - +0.5
967,578 + +1.3
967,578 + -0.3
967,578 + +1.4
967,578 + +0.8
967,579 - -0.1
967,579 - -0.1
967,579 - -0.5
967,579 - +0.7
967,888 - ABZR87_RS20410 0.41 +1.1
967,888 - ABZR87_RS20410 0.41 +2.2
968,062 + ABZR87_RS20410 0.61 +0.6
968,062 + ABZR87_RS20410 0.61 -0.9

Or see this region's nucleotide sequence