Experiment: no_plant_soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19935 and ABZR87_RS19940 are separated by 262 nucleotides ABZR87_RS19940 and ABZR87_RS19945 are separated by 5 nucleotides ABZR87_RS19945 and ABZR87_RS19950 are separated by 49 nucleotides ABZR87_RS19950 and ABZR87_RS19955 are separated by 45 nucleotides
ABZR87_RS19935: ABZR87_RS19935 - hypothetical protein, at 849,378 to 849,728
_RS19935
ABZR87_RS19940: ABZR87_RS19940 - hypothetical protein, at 849,991 to 850,635
_RS19940
ABZR87_RS19945: ABZR87_RS19945 - heavy metal translocating P-type ATPase, at 850,641 to 852,932
_RS19945
ABZR87_RS19950: ABZR87_RS19950 - cytochrome b, at 852,982 to 853,506
_RS19950
ABZR87_RS19955: ABZR87_RS19955 - TolC family protein, at 853,552 to 854,823
_RS19955
Position (kb) 850
851
852
853 Strain fitness (log2 ratio) -2
-1
0
1
2 at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.753 kb on - strand at 849.753 kb on - strand at 849.753 kb on - strand at 849.803 kb on - strand at 849.870 kb on + strand at 849.870 kb on + strand at 849.870 kb on + strand at 849.870 kb on + strand at 849.871 kb on - strand at 849.871 kb on - strand at 849.871 kb on - strand at 849.871 kb on - strand at 849.891 kb on + strand at 849.895 kb on + strand at 849.895 kb on + strand at 849.899 kb on + strand at 849.917 kb on - strand at 849.929 kb on + strand at 849.929 kb on + strand at 849.930 kb on - strand at 849.930 kb on - strand at 849.930 kb on - strand at 849.930 kb on - strand at 849.941 kb on + strand at 849.941 kb on + strand at 850.106 kb on + strand, within ABZR87_RS19940 at 850.117 kb on - strand, within ABZR87_RS19940 at 850.145 kb on + strand, within ABZR87_RS19940 at 850.145 kb on + strand, within ABZR87_RS19940 at 850.145 kb on + strand, within ABZR87_RS19940 at 850.146 kb on - strand, within ABZR87_RS19940 at 850.146 kb on - strand, within ABZR87_RS19940 at 850.146 kb on - strand, within ABZR87_RS19940 at 850.156 kb on - strand, within ABZR87_RS19940 at 850.156 kb on - strand, within ABZR87_RS19940 at 850.157 kb on + strand, within ABZR87_RS19940 at 850.157 kb on + strand, within ABZR87_RS19940 at 850.157 kb on + strand, within ABZR87_RS19940 at 850.157 kb on + strand, within ABZR87_RS19940 at 850.157 kb on + strand, within ABZR87_RS19940 at 850.157 kb on + strand, within ABZR87_RS19940 at 850.157 kb on + strand, within ABZR87_RS19940 at 850.157 kb on + strand, within ABZR87_RS19940 at 850.158 kb on - strand, within ABZR87_RS19940 at 850.158 kb on - strand, within ABZR87_RS19940 at 850.158 kb on - strand, within ABZR87_RS19940 at 850.158 kb on - strand, within ABZR87_RS19940 at 850.158 kb on - strand, within ABZR87_RS19940 at 850.158 kb on - strand, within ABZR87_RS19940 at 850.158 kb on - strand, within ABZR87_RS19940 at 850.191 kb on - strand, within ABZR87_RS19940 at 850.191 kb on - strand, within ABZR87_RS19940 at 850.229 kb on + strand, within ABZR87_RS19940 at 850.229 kb on + strand, within ABZR87_RS19940 at 850.230 kb on - strand, within ABZR87_RS19940 at 850.230 kb on - strand, within ABZR87_RS19940 at 850.310 kb on + strand, within ABZR87_RS19940 at 850.310 kb on + strand, within ABZR87_RS19940 at 850.310 kb on + strand, within ABZR87_RS19940 at 850.310 kb on + strand, within ABZR87_RS19940 at 850.310 kb on + strand, within ABZR87_RS19940 at 850.310 kb on + strand, within ABZR87_RS19940 at 850.310 kb on + strand, within ABZR87_RS19940 at 850.310 kb on + strand, within ABZR87_RS19940 at 850.310 kb on + strand, within ABZR87_RS19940 at 850.311 kb on - strand, within ABZR87_RS19940 at 850.311 kb on - strand, within ABZR87_RS19940 at 850.311 kb on - strand, within ABZR87_RS19940 at 850.311 kb on - strand, within ABZR87_RS19940 at 850.311 kb on - strand, within ABZR87_RS19940 at 850.311 kb on - strand, within ABZR87_RS19940 at 850.311 kb on - strand, within ABZR87_RS19940 at 850.329 kb on + strand, within ABZR87_RS19940 at 850.330 kb on - strand, within ABZR87_RS19940 at 850.337 kb on + strand, within ABZR87_RS19940 at 850.362 kb on + strand, within ABZR87_RS19940 at 850.363 kb on - strand, within ABZR87_RS19940 at 850.439 kb on - strand, within ABZR87_RS19940 at 850.717 kb on + strand at 850.717 kb on + strand at 850.717 kb on + strand at 850.812 kb on + strand at 850.883 kb on - strand, within ABZR87_RS19945 at 850.947 kb on + strand, within ABZR87_RS19945 at 851.028 kb on + strand, within ABZR87_RS19945 at 851.028 kb on + strand, within ABZR87_RS19945 at 851.028 kb on + strand, within ABZR87_RS19945 at 851.029 kb on - strand, within ABZR87_RS19945 at 851.029 kb on - strand, within ABZR87_RS19945 at 851.029 kb on - strand, within ABZR87_RS19945 at 851.029 kb on - strand, within ABZR87_RS19945 at 851.136 kb on + strand, within ABZR87_RS19945 at 851.136 kb on + strand, within ABZR87_RS19945 at 851.136 kb on + strand, within ABZR87_RS19945 at 851.136 kb on + strand, within ABZR87_RS19945 at 851.178 kb on + strand, within ABZR87_RS19945 at 851.178 kb on + strand, within ABZR87_RS19945 at 851.179 kb on - strand, within ABZR87_RS19945 at 851.491 kb on + strand, within ABZR87_RS19945 at 851.491 kb on + strand, within ABZR87_RS19945 at 851.491 kb on + strand, within ABZR87_RS19945 at 851.491 kb on + strand, within ABZR87_RS19945 at 851.491 kb on + strand, within ABZR87_RS19945 at 851.491 kb on + strand, within ABZR87_RS19945 at 851.491 kb on + strand, within ABZR87_RS19945 at 851.492 kb on - strand, within ABZR87_RS19945 at 851.492 kb on - strand, within ABZR87_RS19945 at 851.492 kb on - strand, within ABZR87_RS19945 at 851.492 kb on - strand, within ABZR87_RS19945 at 851.613 kb on + strand, within ABZR87_RS19945 at 851.613 kb on + strand, within ABZR87_RS19945 at 851.614 kb on - strand, within ABZR87_RS19945 at 851.692 kb on + strand, within ABZR87_RS19945 at 851.692 kb on + strand, within ABZR87_RS19945 at 851.692 kb on + strand, within ABZR87_RS19945 at 851.692 kb on + strand, within ABZR87_RS19945 at 851.692 kb on + strand, within ABZR87_RS19945 at 851.692 kb on + strand, within ABZR87_RS19945 at 851.693 kb on - strand, within ABZR87_RS19945 at 851.693 kb on - strand, within ABZR87_RS19945 at 851.693 kb on - strand, within ABZR87_RS19945 at 851.693 kb on - strand, within ABZR87_RS19945 at 851.693 kb on - strand, within ABZR87_RS19945 at 851.752 kb on + strand, within ABZR87_RS19945 at 851.753 kb on - strand, within ABZR87_RS19945 at 851.753 kb on - strand, within ABZR87_RS19945 at 851.753 kb on - strand, within ABZR87_RS19945 at 851.753 kb on - strand, within ABZR87_RS19945 at 851.753 kb on - strand, within ABZR87_RS19945 at 851.753 kb on - strand, within ABZR87_RS19945 at 851.753 kb on - strand, within ABZR87_RS19945 at 851.888 kb on + strand, within ABZR87_RS19945 at 851.948 kb on - strand, within ABZR87_RS19945 at 851.984 kb on - strand, within ABZR87_RS19945 at 852.069 kb on + strand, within ABZR87_RS19945 at 852.070 kb on - strand, within ABZR87_RS19945 at 852.241 kb on + strand, within ABZR87_RS19945 at 852.242 kb on - strand, within ABZR87_RS19945 at 852.480 kb on + strand, within ABZR87_RS19945 at 852.850 kb on + strand at 852.851 kb on - strand at 852.851 kb on - strand at 852.862 kb on - strand at 853.062 kb on + strand, within ABZR87_RS19950 at 853.062 kb on + strand, within ABZR87_RS19950 at 853.064 kb on + strand, within ABZR87_RS19950 at 853.064 kb on + strand, within ABZR87_RS19950 at 853.064 kb on + strand, within ABZR87_RS19950 at 853.064 kb on + strand, within ABZR87_RS19950 at 853.065 kb on - strand, within ABZR87_RS19950 at 853.065 kb on - strand, within ABZR87_RS19950 at 853.065 kb on - strand, within ABZR87_RS19950 at 853.065 kb on - strand, within ABZR87_RS19950 at 853.065 kb on - strand, within ABZR87_RS19950 at 853.128 kb on + strand, within ABZR87_RS19950 at 853.226 kb on + strand, within ABZR87_RS19950 at 853.227 kb on - strand, within ABZR87_RS19950 at 853.227 kb on - strand, within ABZR87_RS19950 at 853.264 kb on + strand, within ABZR87_RS19950 at 853.367 kb on + strand, within ABZR87_RS19950 at 853.368 kb on + strand, within ABZR87_RS19950 at 853.368 kb on + strand, within ABZR87_RS19950 at 853.368 kb on + strand, within ABZR87_RS19950 at 853.369 kb on - strand, within ABZR87_RS19950 at 853.369 kb on - strand, within ABZR87_RS19950 at 853.369 kb on - strand, within ABZR87_RS19950 at 853.369 kb on - strand, within ABZR87_RS19950 at 853.373 kb on - strand, within ABZR87_RS19950 at 853.373 kb on - strand, within ABZR87_RS19950 at 853.418 kb on + strand, within ABZR87_RS19950 at 853.488 kb on - strand at 853.488 kb on - strand at 853.488 kb on - strand at 853.488 kb on - strand at 853.506 kb on + strand at 853.506 kb on + strand at 853.506 kb on + strand at 853.507 kb on - strand at 853.507 kb on - strand at 853.507 kb on - strand at 853.675 kb on + strand at 853.675 kb on + strand at 853.675 kb on + strand at 853.676 kb on - strand at 853.676 kb on - strand at 853.676 kb on - strand at 853.676 kb on - strand at 853.706 kb on + strand, within ABZR87_RS19955 at 853.716 kb on + strand, within ABZR87_RS19955 at 853.799 kb on + strand, within ABZR87_RS19955
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB remove 849,752 + -0.5 849,752 + -0.2 849,752 + -0.9 849,752 + -0.4 849,752 + -0.5 849,752 + +0.6 849,752 + +1.8 849,752 + +0.4 849,752 + +1.0 849,752 + +0.5 849,752 + -0.6 849,753 - +0.2 849,753 - -0.7 849,753 - +0.0 849,803 - +0.2 849,870 + -0.7 849,870 + -0.4 849,870 + -0.8 849,870 + +0.1 849,871 - +1.9 849,871 - -1.2 849,871 - -2.3 849,871 - -1.2 849,891 + -1.2 849,895 + +0.7 849,895 + -0.2 849,899 + +2.1 849,917 - -0.5 849,929 + -0.1 849,929 + -1.9 849,930 - -1.6 849,930 - +0.4 849,930 - +2.5 849,930 - +0.7 849,941 + -0.6 849,941 + -0.3 850,106 + ABZR87_RS19940 0.18 -0.3 850,117 - ABZR87_RS19940 0.20 +0.7 850,145 + ABZR87_RS19940 0.24 -0.1 850,145 + ABZR87_RS19940 0.24 +0.9 850,145 + ABZR87_RS19940 0.24 +0.8 850,146 - ABZR87_RS19940 0.24 -0.8 850,146 - ABZR87_RS19940 0.24 +1.3 850,146 - ABZR87_RS19940 0.24 +0.5 850,156 - ABZR87_RS19940 0.26 -0.5 850,156 - ABZR87_RS19940 0.26 +1.3 850,157 + ABZR87_RS19940 0.26 -0.9 850,157 + ABZR87_RS19940 0.26 -0.1 850,157 + ABZR87_RS19940 0.26 +0.0 850,157 + ABZR87_RS19940 0.26 -0.9 850,157 + ABZR87_RS19940 0.26 +0.8 850,157 + ABZR87_RS19940 0.26 -0.1 850,157 + ABZR87_RS19940 0.26 -0.1 850,157 + ABZR87_RS19940 0.26 -0.3 850,158 - ABZR87_RS19940 0.26 -2.1 850,158 - ABZR87_RS19940 0.26 -0.0 850,158 - ABZR87_RS19940 0.26 +0.5 850,158 - ABZR87_RS19940 0.26 -0.9 850,158 - ABZR87_RS19940 0.26 -0.1 850,158 - ABZR87_RS19940 0.26 +1.3 850,158 - ABZR87_RS19940 0.26 -0.5 850,191 - ABZR87_RS19940 0.31 -0.2 850,191 - ABZR87_RS19940 0.31 +0.1 850,229 + ABZR87_RS19940 0.37 +0.4 850,229 + ABZR87_RS19940 0.37 -0.6 850,230 - ABZR87_RS19940 0.37 +1.0 850,230 - ABZR87_RS19940 0.37 -0.3 850,310 + ABZR87_RS19940 0.49 +0.4 850,310 + ABZR87_RS19940 0.49 +0.2 850,310 + ABZR87_RS19940 0.49 -0.4 850,310 + ABZR87_RS19940 0.49 +0.0 850,310 + ABZR87_RS19940 0.49 -0.4 850,310 + ABZR87_RS19940 0.49 +0.8 850,310 + ABZR87_RS19940 0.49 -2.1 850,310 + ABZR87_RS19940 0.49 +0.7 850,310 + ABZR87_RS19940 0.49 -0.8 850,311 - ABZR87_RS19940 0.50 -0.1 850,311 - ABZR87_RS19940 0.50 +0.3 850,311 - ABZR87_RS19940 0.50 +0.1 850,311 - ABZR87_RS19940 0.50 -0.9 850,311 - ABZR87_RS19940 0.50 -0.3 850,311 - ABZR87_RS19940 0.50 -0.3 850,311 - ABZR87_RS19940 0.50 +0.6 850,329 + ABZR87_RS19940 0.52 +0.2 850,330 - ABZR87_RS19940 0.53 -1.1 850,337 + ABZR87_RS19940 0.54 -0.3 850,362 + ABZR87_RS19940 0.58 +0.1 850,363 - ABZR87_RS19940 0.58 +0.1 850,439 - ABZR87_RS19940 0.69 -0.6 850,717 + -0.6 850,717 + +0.4 850,717 + -0.9 850,812 + +1.3 850,883 - ABZR87_RS19945 0.11 +0.2 850,947 + ABZR87_RS19945 0.13 -0.5 851,028 + ABZR87_RS19945 0.17 -0.2 851,028 + ABZR87_RS19945 0.17 +0.6 851,028 + ABZR87_RS19945 0.17 +0.3 851,029 - ABZR87_RS19945 0.17 -1.2 851,029 - ABZR87_RS19945 0.17 -0.5 851,029 - ABZR87_RS19945 0.17 -0.9 851,029 - ABZR87_RS19945 0.17 -0.9 851,136 + ABZR87_RS19945 0.22 +0.3 851,136 + ABZR87_RS19945 0.22 +0.5 851,136 + ABZR87_RS19945 0.22 +0.5 851,136 + ABZR87_RS19945 0.22 -0.4 851,178 + ABZR87_RS19945 0.23 -1.0 851,178 + ABZR87_RS19945 0.23 -0.1 851,179 - ABZR87_RS19945 0.23 +0.3 851,491 + ABZR87_RS19945 0.37 -0.7 851,491 + ABZR87_RS19945 0.37 -0.5 851,491 + ABZR87_RS19945 0.37 +0.6 851,491 + ABZR87_RS19945 0.37 -0.2 851,491 + ABZR87_RS19945 0.37 -0.2 851,491 + ABZR87_RS19945 0.37 -0.0 851,491 + ABZR87_RS19945 0.37 -1.0 851,492 - ABZR87_RS19945 0.37 -0.3 851,492 - ABZR87_RS19945 0.37 -0.7 851,492 - ABZR87_RS19945 0.37 -1.6 851,492 - ABZR87_RS19945 0.37 -0.1 851,613 + ABZR87_RS19945 0.42 -0.7 851,613 + ABZR87_RS19945 0.42 -1.2 851,614 - ABZR87_RS19945 0.42 -0.5 851,692 + ABZR87_RS19945 0.46 -1.0 851,692 + ABZR87_RS19945 0.46 +1.3 851,692 + ABZR87_RS19945 0.46 -0.1 851,692 + ABZR87_RS19945 0.46 +0.4 851,692 + ABZR87_RS19945 0.46 +0.2 851,692 + ABZR87_RS19945 0.46 +0.2 851,693 - ABZR87_RS19945 0.46 -0.0 851,693 - ABZR87_RS19945 0.46 -1.3 851,693 - ABZR87_RS19945 0.46 +0.3 851,693 - ABZR87_RS19945 0.46 -0.1 851,693 - ABZR87_RS19945 0.46 +0.7 851,752 + ABZR87_RS19945 0.48 -1.1 851,753 - ABZR87_RS19945 0.49 -0.4 851,753 - ABZR87_RS19945 0.49 -0.3 851,753 - ABZR87_RS19945 0.49 -0.5 851,753 - ABZR87_RS19945 0.49 +0.1 851,753 - ABZR87_RS19945 0.49 +0.5 851,753 - ABZR87_RS19945 0.49 -0.5 851,753 - ABZR87_RS19945 0.49 +2.7 851,888 + ABZR87_RS19945 0.54 -0.9 851,948 - ABZR87_RS19945 0.57 -0.1 851,984 - ABZR87_RS19945 0.59 +0.5 852,069 + ABZR87_RS19945 0.62 -0.8 852,070 - ABZR87_RS19945 0.62 +0.1 852,241 + ABZR87_RS19945 0.70 -1.6 852,242 - ABZR87_RS19945 0.70 +1.5 852,480 + ABZR87_RS19945 0.80 -0.4 852,850 + +0.6 852,851 - -0.4 852,851 - +1.0 852,862 - +0.1 853,062 + ABZR87_RS19950 0.15 +0.9 853,062 + ABZR87_RS19950 0.15 -0.0 853,064 + ABZR87_RS19950 0.16 +0.8 853,064 + ABZR87_RS19950 0.16 +0.1 853,064 + ABZR87_RS19950 0.16 +0.8 853,064 + ABZR87_RS19950 0.16 -0.8 853,065 - ABZR87_RS19950 0.16 -0.5 853,065 - ABZR87_RS19950 0.16 -1.2 853,065 - ABZR87_RS19950 0.16 +0.0 853,065 - ABZR87_RS19950 0.16 -0.5 853,065 - ABZR87_RS19950 0.16 +2.5 853,128 + ABZR87_RS19950 0.28 -0.5 853,226 + ABZR87_RS19950 0.46 +1.6 853,227 - ABZR87_RS19950 0.47 -0.1 853,227 - ABZR87_RS19950 0.47 +0.8 853,264 + ABZR87_RS19950 0.54 -0.4 853,367 + ABZR87_RS19950 0.73 -0.0 853,368 + ABZR87_RS19950 0.74 +0.1 853,368 + ABZR87_RS19950 0.74 +0.6 853,368 + ABZR87_RS19950 0.74 +0.7 853,369 - ABZR87_RS19950 0.74 +0.8 853,369 - ABZR87_RS19950 0.74 +0.3 853,369 - ABZR87_RS19950 0.74 +0.4 853,369 - ABZR87_RS19950 0.74 +0.1 853,373 - ABZR87_RS19950 0.74 +0.0 853,373 - ABZR87_RS19950 0.74 -0.6 853,418 + ABZR87_RS19950 0.83 +0.7 853,488 - +0.5 853,488 - +0.9 853,488 - +0.3 853,488 - -0.7 853,506 + -0.1 853,506 + +0.5 853,506 + -1.2 853,507 - -0.2 853,507 - +0.3 853,507 - +0.5 853,675 + +0.5 853,675 + -0.5 853,675 + -2.6 853,676 - +0.7 853,676 - +0.5 853,676 - -0.2 853,676 - +0.9 853,706 + ABZR87_RS19955 0.12 -0.8 853,716 + ABZR87_RS19955 0.13 +1.9 853,799 + ABZR87_RS19955 0.19 +1.0
Or see this region's nucleotide sequence