Experiment: no_plant_soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19040 and ABZR87_RS19045 are separated by 122 nucleotides ABZR87_RS19045 and ABZR87_RS19050 are separated by 85 nucleotides
ABZR87_RS19040: ABZR87_RS19040 - ATP-binding protein, at 633,686 to 634,981
_RS19040
ABZR87_RS19045: ABZR87_RS19045 - DUF333 domain-containing protein, at 635,104 to 635,550
_RS19045
ABZR87_RS19050: ABZR87_RS19050 - glycosyltransferase family 39 protein, at 635,636 to 637,330
_RS19050
Position (kb) 635
636 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 634.247 kb on + strand, within ABZR87_RS19040 at 634.247 kb on + strand, within ABZR87_RS19040 at 634.248 kb on - strand, within ABZR87_RS19040 at 634.248 kb on - strand, within ABZR87_RS19040 at 634.248 kb on - strand, within ABZR87_RS19040 at 634.278 kb on - strand, within ABZR87_RS19040 at 634.312 kb on + strand, within ABZR87_RS19040 at 634.312 kb on + strand, within ABZR87_RS19040 at 634.313 kb on - strand, within ABZR87_RS19040 at 634.499 kb on + strand, within ABZR87_RS19040 at 634.499 kb on + strand, within ABZR87_RS19040 at 634.500 kb on - strand, within ABZR87_RS19040 at 634.686 kb on - strand, within ABZR87_RS19040 at 634.686 kb on - strand, within ABZR87_RS19040 at 634.686 kb on - strand, within ABZR87_RS19040 at 635.020 kb on + strand at 635.020 kb on + strand at 635.020 kb on + strand at 635.020 kb on + strand at 635.021 kb on - strand at 635.021 kb on - strand at 635.038 kb on + strand at 635.038 kb on + strand at 635.038 kb on + strand at 635.038 kb on + strand at 635.039 kb on - strand at 635.043 kb on + strand at 635.043 kb on + strand at 635.043 kb on + strand at 635.043 kb on + strand at 635.044 kb on - strand at 635.044 kb on - strand at 635.044 kb on - strand at 635.048 kb on + strand at 635.347 kb on + strand, within ABZR87_RS19045 at 635.419 kb on + strand, within ABZR87_RS19045 at 635.419 kb on + strand, within ABZR87_RS19045 at 635.420 kb on - strand, within ABZR87_RS19045 at 635.420 kb on - strand, within ABZR87_RS19045 at 635.420 kb on - strand, within ABZR87_RS19045 at 635.420 kb on - strand, within ABZR87_RS19045 at 635.420 kb on - strand, within ABZR87_RS19045 at 635.548 kb on + strand at 635.739 kb on + strand at 635.740 kb on - strand at 635.869 kb on - strand, within ABZR87_RS19050 at 635.871 kb on + strand, within ABZR87_RS19050 at 635.872 kb on - strand, within ABZR87_RS19050 at 635.872 kb on - strand, within ABZR87_RS19050 at 635.904 kb on + strand, within ABZR87_RS19050 at 635.905 kb on - strand, within ABZR87_RS19050 at 635.905 kb on - strand, within ABZR87_RS19050 at 636.516 kb on + strand, within ABZR87_RS19050 at 636.517 kb on - strand, within ABZR87_RS19050 at 636.517 kb on - strand, within ABZR87_RS19050
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB remove 634,247 + ABZR87_RS19040 0.43 -0.7 634,247 + ABZR87_RS19040 0.43 +0.1 634,248 - ABZR87_RS19040 0.43 -0.5 634,248 - ABZR87_RS19040 0.43 +0.1 634,248 - ABZR87_RS19040 0.43 +0.8 634,278 - ABZR87_RS19040 0.46 +0.5 634,312 + ABZR87_RS19040 0.48 -0.7 634,312 + ABZR87_RS19040 0.48 -0.1 634,313 - ABZR87_RS19040 0.48 -1.8 634,499 + ABZR87_RS19040 0.63 -0.4 634,499 + ABZR87_RS19040 0.63 -1.2 634,500 - ABZR87_RS19040 0.63 +0.1 634,686 - ABZR87_RS19040 0.77 -1.5 634,686 - ABZR87_RS19040 0.77 -0.2 634,686 - ABZR87_RS19040 0.77 -0.0 635,020 + +0.1 635,020 + -0.5 635,020 + -0.4 635,020 + +0.6 635,021 - -0.6 635,021 - -0.3 635,038 + -0.8 635,038 + -0.5 635,038 + -1.3 635,038 + +0.2 635,039 - -1.0 635,043 + +0.8 635,043 + +0.4 635,043 + -0.6 635,043 + +3.0 635,044 - -0.1 635,044 - +0.5 635,044 - -0.5 635,048 + -1.1 635,347 + ABZR87_RS19045 0.54 -2.1 635,419 + ABZR87_RS19045 0.70 +0.7 635,419 + ABZR87_RS19045 0.70 -0.8 635,420 - ABZR87_RS19045 0.71 -0.7 635,420 - ABZR87_RS19045 0.71 -1.7 635,420 - ABZR87_RS19045 0.71 -0.8 635,420 - ABZR87_RS19045 0.71 -0.8 635,420 - ABZR87_RS19045 0.71 -0.4 635,548 + -1.6 635,739 + +1.5 635,740 - +0.8 635,869 - ABZR87_RS19050 0.14 -0.7 635,871 + ABZR87_RS19050 0.14 -0.5 635,872 - ABZR87_RS19050 0.14 -2.1 635,872 - ABZR87_RS19050 0.14 +0.3 635,904 + ABZR87_RS19050 0.16 +0.5 635,905 - ABZR87_RS19050 0.16 +1.2 635,905 - ABZR87_RS19050 0.16 +0.5 636,516 + ABZR87_RS19050 0.52 +1.2 636,517 - ABZR87_RS19050 0.52 -0.5 636,517 - ABZR87_RS19050 0.52 -1.8
Or see this region's nucleotide sequence