Experiment: no_plant_soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18890 and ABZR87_RS18895 overlap by 8 nucleotides ABZR87_RS18895 and ABZR87_RS18900 are separated by 11 nucleotides
ABZR87_RS18890: ABZR87_RS18890 - hypothetical protein, at 593,307 to 594,866
_RS18890
ABZR87_RS18895: ABZR87_RS18895 - DUF3274 domain-containing protein, at 594,859 to 597,369
_RS18895
ABZR87_RS18900: ABZR87_RS18900 - type VI secretion system tip protein TssI/VgrG, at 597,381 to 599,009
_RS18900
Position (kb) 594
595
596
597
598 Strain fitness (log2 ratio) -2
-1
0
1
2 at 593.908 kb on + strand, within ABZR87_RS18890 at 593.944 kb on + strand, within ABZR87_RS18890 at 593.944 kb on + strand, within ABZR87_RS18890 at 593.944 kb on + strand, within ABZR87_RS18890 at 593.968 kb on + strand, within ABZR87_RS18890 at 594.172 kb on + strand, within ABZR87_RS18890 at 594.172 kb on + strand, within ABZR87_RS18890 at 594.172 kb on + strand, within ABZR87_RS18890 at 594.172 kb on + strand, within ABZR87_RS18890 at 594.172 kb on + strand, within ABZR87_RS18890 at 594.173 kb on - strand, within ABZR87_RS18890 at 594.308 kb on + strand, within ABZR87_RS18890 at 594.308 kb on + strand, within ABZR87_RS18890 at 594.309 kb on - strand, within ABZR87_RS18890 at 594.310 kb on + strand, within ABZR87_RS18890 at 594.310 kb on + strand, within ABZR87_RS18890 at 594.310 kb on + strand, within ABZR87_RS18890 at 594.310 kb on + strand, within ABZR87_RS18890 at 594.310 kb on + strand, within ABZR87_RS18890 at 594.310 kb on + strand, within ABZR87_RS18890 at 594.310 kb on + strand, within ABZR87_RS18890 at 594.310 kb on + strand, within ABZR87_RS18890 at 594.310 kb on + strand, within ABZR87_RS18890 at 594.310 kb on + strand, within ABZR87_RS18890 at 594.310 kb on + strand, within ABZR87_RS18890 at 594.311 kb on - strand, within ABZR87_RS18890 at 594.311 kb on - strand, within ABZR87_RS18890 at 594.311 kb on - strand, within ABZR87_RS18890 at 594.311 kb on - strand, within ABZR87_RS18890 at 594.311 kb on - strand, within ABZR87_RS18890 at 594.320 kb on + strand, within ABZR87_RS18890 at 594.320 kb on + strand, within ABZR87_RS18890 at 594.400 kb on + strand, within ABZR87_RS18890 at 594.401 kb on - strand, within ABZR87_RS18890 at 594.401 kb on - strand, within ABZR87_RS18890 at 594.406 kb on + strand, within ABZR87_RS18890 at 594.407 kb on - strand, within ABZR87_RS18890 at 594.424 kb on + strand, within ABZR87_RS18890 at 594.430 kb on + strand, within ABZR87_RS18890 at 594.431 kb on - strand, within ABZR87_RS18890 at 594.443 kb on - strand, within ABZR87_RS18890 at 594.481 kb on + strand, within ABZR87_RS18890 at 594.481 kb on + strand, within ABZR87_RS18890 at 594.481 kb on + strand, within ABZR87_RS18890 at 594.482 kb on - strand, within ABZR87_RS18890 at 594.680 kb on - strand, within ABZR87_RS18890 at 594.680 kb on - strand, within ABZR87_RS18890 at 594.709 kb on - strand, within ABZR87_RS18890 at 594.709 kb on - strand, within ABZR87_RS18890 at 594.740 kb on + strand at 594.741 kb on - strand at 594.755 kb on - strand at 594.785 kb on + strand at 594.786 kb on - strand at 594.991 kb on + strand at 594.991 kb on + strand at 594.991 kb on + strand at 595.073 kb on + strand at 595.081 kb on + strand at 595.081 kb on + strand at 595.081 kb on + strand at 595.082 kb on - strand at 595.082 kb on - strand at 595.082 kb on - strand at 595.082 kb on - strand at 595.145 kb on + strand, within ABZR87_RS18895 at 595.196 kb on + strand, within ABZR87_RS18895 at 595.197 kb on - strand, within ABZR87_RS18895 at 595.197 kb on - strand, within ABZR87_RS18895 at 595.199 kb on + strand, within ABZR87_RS18895 at 595.200 kb on - strand, within ABZR87_RS18895 at 595.317 kb on - strand, within ABZR87_RS18895 at 595.591 kb on + strand, within ABZR87_RS18895 at 595.592 kb on - strand, within ABZR87_RS18895 at 595.592 kb on - strand, within ABZR87_RS18895 at 595.607 kb on + strand, within ABZR87_RS18895 at 595.607 kb on + strand, within ABZR87_RS18895 at 595.607 kb on + strand, within ABZR87_RS18895 at 595.607 kb on + strand, within ABZR87_RS18895 at 595.607 kb on + strand, within ABZR87_RS18895 at 595.607 kb on + strand, within ABZR87_RS18895 at 595.608 kb on - strand, within ABZR87_RS18895 at 595.608 kb on - strand, within ABZR87_RS18895 at 595.608 kb on - strand, within ABZR87_RS18895 at 595.769 kb on + strand, within ABZR87_RS18895 at 595.770 kb on - strand, within ABZR87_RS18895 at 595.770 kb on - strand, within ABZR87_RS18895 at 595.785 kb on + strand, within ABZR87_RS18895 at 595.786 kb on - strand, within ABZR87_RS18895 at 595.786 kb on - strand, within ABZR87_RS18895 at 595.789 kb on + strand, within ABZR87_RS18895 at 595.789 kb on + strand, within ABZR87_RS18895 at 595.790 kb on - strand, within ABZR87_RS18895 at 595.821 kb on + strand, within ABZR87_RS18895 at 595.821 kb on + strand, within ABZR87_RS18895 at 595.822 kb on - strand, within ABZR87_RS18895 at 596.069 kb on + strand, within ABZR87_RS18895 at 596.070 kb on - strand, within ABZR87_RS18895 at 596.070 kb on - strand, within ABZR87_RS18895 at 596.070 kb on - strand, within ABZR87_RS18895 at 596.070 kb on - strand, within ABZR87_RS18895 at 596.070 kb on - strand, within ABZR87_RS18895 at 596.078 kb on + strand, within ABZR87_RS18895 at 596.079 kb on - strand, within ABZR87_RS18895 at 596.132 kb on + strand, within ABZR87_RS18895 at 596.132 kb on + strand, within ABZR87_RS18895 at 596.133 kb on - strand, within ABZR87_RS18895 at 596.168 kb on + strand, within ABZR87_RS18895 at 596.169 kb on - strand, within ABZR87_RS18895 at 596.169 kb on - strand, within ABZR87_RS18895 at 596.236 kb on + strand, within ABZR87_RS18895 at 596.236 kb on + strand, within ABZR87_RS18895 at 596.236 kb on + strand, within ABZR87_RS18895 at 596.236 kb on + strand, within ABZR87_RS18895 at 596.237 kb on - strand, within ABZR87_RS18895 at 596.340 kb on - strand, within ABZR87_RS18895 at 596.391 kb on - strand, within ABZR87_RS18895 at 596.391 kb on - strand, within ABZR87_RS18895 at 596.436 kb on + strand, within ABZR87_RS18895 at 596.436 kb on + strand, within ABZR87_RS18895 at 596.436 kb on + strand, within ABZR87_RS18895 at 596.436 kb on + strand, within ABZR87_RS18895 at 596.437 kb on - strand, within ABZR87_RS18895 at 596.437 kb on - strand, within ABZR87_RS18895 at 596.522 kb on + strand, within ABZR87_RS18895 at 596.522 kb on + strand, within ABZR87_RS18895 at 596.522 kb on + strand, within ABZR87_RS18895 at 596.523 kb on - strand, within ABZR87_RS18895 at 596.523 kb on - strand, within ABZR87_RS18895 at 596.562 kb on - strand, within ABZR87_RS18895 at 596.582 kb on + strand, within ABZR87_RS18895 at 596.583 kb on - strand, within ABZR87_RS18895 at 596.583 kb on - strand, within ABZR87_RS18895 at 596.583 kb on - strand, within ABZR87_RS18895 at 596.583 kb on - strand, within ABZR87_RS18895 at 596.583 kb on - strand, within ABZR87_RS18895 at 596.583 kb on - strand, within ABZR87_RS18895 at 596.586 kb on + strand, within ABZR87_RS18895 at 596.702 kb on + strand, within ABZR87_RS18895 at 596.703 kb on - strand, within ABZR87_RS18895 at 596.771 kb on + strand, within ABZR87_RS18895 at 596.827 kb on + strand, within ABZR87_RS18895 at 596.827 kb on + strand, within ABZR87_RS18895 at 596.827 kb on + strand, within ABZR87_RS18895 at 596.827 kb on + strand, within ABZR87_RS18895 at 596.828 kb on - strand, within ABZR87_RS18895 at 596.828 kb on - strand, within ABZR87_RS18895 at 596.828 kb on - strand, within ABZR87_RS18895 at 596.947 kb on - strand, within ABZR87_RS18895 at 597.078 kb on - strand, within ABZR87_RS18895 at 597.105 kb on - strand, within ABZR87_RS18895 at 597.118 kb on + strand, within ABZR87_RS18895 at 597.119 kb on - strand at 597.119 kb on - strand at 597.119 kb on - strand at 597.285 kb on + strand at 597.285 kb on + strand at 597.286 kb on - strand at 597.286 kb on - strand at 597.286 kb on - strand at 597.286 kb on - strand at 597.508 kb on + strand at 597.508 kb on + strand at 597.508 kb on + strand at 597.508 kb on + strand at 597.509 kb on - strand at 597.509 kb on - strand at 597.638 kb on + strand, within ABZR87_RS18900 at 597.901 kb on + strand, within ABZR87_RS18900 at 597.902 kb on - strand, within ABZR87_RS18900 at 597.940 kb on - strand, within ABZR87_RS18900 at 597.964 kb on + strand, within ABZR87_RS18900 at 597.965 kb on - strand, within ABZR87_RS18900 at 597.987 kb on - strand, within ABZR87_RS18900 at 598.013 kb on - strand, within ABZR87_RS18900 at 598.150 kb on + strand, within ABZR87_RS18900 at 598.150 kb on + strand, within ABZR87_RS18900 at 598.150 kb on + strand, within ABZR87_RS18900 at 598.280 kb on + strand, within ABZR87_RS18900 at 598.363 kb on + strand, within ABZR87_RS18900 at 598.363 kb on + strand, within ABZR87_RS18900 at 598.363 kb on + strand, within ABZR87_RS18900 at 598.364 kb on - strand, within ABZR87_RS18900
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB remove 593,908 + ABZR87_RS18890 0.39 +1.1 593,944 + ABZR87_RS18890 0.41 -0.2 593,944 + ABZR87_RS18890 0.41 +1.0 593,944 + ABZR87_RS18890 0.41 -0.4 593,968 + ABZR87_RS18890 0.42 +1.0 594,172 + ABZR87_RS18890 0.55 +0.7 594,172 + ABZR87_RS18890 0.55 -0.1 594,172 + ABZR87_RS18890 0.55 +0.2 594,172 + ABZR87_RS18890 0.55 -0.6 594,172 + ABZR87_RS18890 0.55 -0.2 594,173 - ABZR87_RS18890 0.56 +0.4 594,308 + ABZR87_RS18890 0.64 -1.0 594,308 + ABZR87_RS18890 0.64 +0.4 594,309 - ABZR87_RS18890 0.64 -0.1 594,310 + ABZR87_RS18890 0.64 -0.2 594,310 + ABZR87_RS18890 0.64 +0.1 594,310 + ABZR87_RS18890 0.64 +0.3 594,310 + ABZR87_RS18890 0.64 +0.1 594,310 + ABZR87_RS18890 0.64 -0.4 594,310 + ABZR87_RS18890 0.64 -0.3 594,310 + ABZR87_RS18890 0.64 -1.5 594,310 + ABZR87_RS18890 0.64 -1.1 594,310 + ABZR87_RS18890 0.64 -0.2 594,310 + ABZR87_RS18890 0.64 +0.2 594,310 + ABZR87_RS18890 0.64 +1.9 594,311 - ABZR87_RS18890 0.64 +0.4 594,311 - ABZR87_RS18890 0.64 -0.4 594,311 - ABZR87_RS18890 0.64 -1.0 594,311 - ABZR87_RS18890 0.64 +0.3 594,311 - ABZR87_RS18890 0.64 -0.4 594,320 + ABZR87_RS18890 0.65 +0.5 594,320 + ABZR87_RS18890 0.65 +0.1 594,400 + ABZR87_RS18890 0.70 -0.1 594,401 - ABZR87_RS18890 0.70 +0.2 594,401 - ABZR87_RS18890 0.70 -0.7 594,406 + ABZR87_RS18890 0.70 +2.2 594,407 - ABZR87_RS18890 0.71 +0.4 594,424 + ABZR87_RS18890 0.72 -0.7 594,430 + ABZR87_RS18890 0.72 +0.4 594,431 - ABZR87_RS18890 0.72 -1.7 594,443 - ABZR87_RS18890 0.73 +0.8 594,481 + ABZR87_RS18890 0.75 -1.0 594,481 + ABZR87_RS18890 0.75 -0.9 594,481 + ABZR87_RS18890 0.75 -0.9 594,482 - ABZR87_RS18890 0.75 -1.5 594,680 - ABZR87_RS18890 0.88 -0.6 594,680 - ABZR87_RS18890 0.88 -0.5 594,709 - ABZR87_RS18890 0.90 -0.0 594,709 - ABZR87_RS18890 0.90 +1.3 594,740 + -0.1 594,741 - -0.6 594,755 - -0.4 594,785 + +0.3 594,786 - -0.3 594,991 + +0.6 594,991 + +0.5 594,991 + -1.0 595,073 + -0.1 595,081 + -0.1 595,081 + -0.5 595,081 + +0.8 595,082 - -0.3 595,082 - -0.7 595,082 - -0.5 595,082 - -0.2 595,145 + ABZR87_RS18895 0.11 +0.5 595,196 + ABZR87_RS18895 0.13 -0.0 595,197 - ABZR87_RS18895 0.13 +0.3 595,197 - ABZR87_RS18895 0.13 -0.4 595,199 + ABZR87_RS18895 0.14 +0.2 595,200 - ABZR87_RS18895 0.14 -0.5 595,317 - ABZR87_RS18895 0.18 -1.5 595,591 + ABZR87_RS18895 0.29 -1.9 595,592 - ABZR87_RS18895 0.29 -1.1 595,592 - ABZR87_RS18895 0.29 +0.0 595,607 + ABZR87_RS18895 0.30 -0.4 595,607 + ABZR87_RS18895 0.30 -1.9 595,607 + ABZR87_RS18895 0.30 -0.8 595,607 + ABZR87_RS18895 0.30 -0.1 595,607 + ABZR87_RS18895 0.30 +0.7 595,607 + ABZR87_RS18895 0.30 -0.5 595,608 - ABZR87_RS18895 0.30 +0.5 595,608 - ABZR87_RS18895 0.30 -0.2 595,608 - ABZR87_RS18895 0.30 -2.5 595,769 + ABZR87_RS18895 0.36 -0.1 595,770 - ABZR87_RS18895 0.36 -0.8 595,770 - ABZR87_RS18895 0.36 +0.2 595,785 + ABZR87_RS18895 0.37 -1.3 595,786 - ABZR87_RS18895 0.37 -0.9 595,786 - ABZR87_RS18895 0.37 -0.2 595,789 + ABZR87_RS18895 0.37 +0.4 595,789 + ABZR87_RS18895 0.37 +0.2 595,790 - ABZR87_RS18895 0.37 +0.5 595,821 + ABZR87_RS18895 0.38 -1.5 595,821 + ABZR87_RS18895 0.38 -1.2 595,822 - ABZR87_RS18895 0.38 -0.4 596,069 + ABZR87_RS18895 0.48 -0.9 596,070 - ABZR87_RS18895 0.48 -0.3 596,070 - ABZR87_RS18895 0.48 +0.7 596,070 - ABZR87_RS18895 0.48 -0.1 596,070 - ABZR87_RS18895 0.48 +0.3 596,070 - ABZR87_RS18895 0.48 -0.6 596,078 + ABZR87_RS18895 0.49 -0.8 596,079 - ABZR87_RS18895 0.49 +0.5 596,132 + ABZR87_RS18895 0.51 -0.3 596,132 + ABZR87_RS18895 0.51 -0.1 596,133 - ABZR87_RS18895 0.51 +0.7 596,168 + ABZR87_RS18895 0.52 +0.4 596,169 - ABZR87_RS18895 0.52 +0.9 596,169 - ABZR87_RS18895 0.52 -0.8 596,236 + ABZR87_RS18895 0.55 -0.3 596,236 + ABZR87_RS18895 0.55 +0.2 596,236 + ABZR87_RS18895 0.55 -1.4 596,236 + ABZR87_RS18895 0.55 -0.2 596,237 - ABZR87_RS18895 0.55 +0.3 596,340 - ABZR87_RS18895 0.59 -1.0 596,391 - ABZR87_RS18895 0.61 +1.0 596,391 - ABZR87_RS18895 0.61 +0.2 596,436 + ABZR87_RS18895 0.63 -1.7 596,436 + ABZR87_RS18895 0.63 +0.4 596,436 + ABZR87_RS18895 0.63 +0.3 596,436 + ABZR87_RS18895 0.63 -0.3 596,437 - ABZR87_RS18895 0.63 +0.5 596,437 - ABZR87_RS18895 0.63 +0.2 596,522 + ABZR87_RS18895 0.66 -0.5 596,522 + ABZR87_RS18895 0.66 +0.2 596,522 + ABZR87_RS18895 0.66 -0.8 596,523 - ABZR87_RS18895 0.66 +0.3 596,523 - ABZR87_RS18895 0.66 +0.0 596,562 - ABZR87_RS18895 0.68 -1.5 596,582 + ABZR87_RS18895 0.69 -0.2 596,583 - ABZR87_RS18895 0.69 +0.3 596,583 - ABZR87_RS18895 0.69 +0.8 596,583 - ABZR87_RS18895 0.69 -0.3 596,583 - ABZR87_RS18895 0.69 +0.1 596,583 - ABZR87_RS18895 0.69 -2.1 596,583 - ABZR87_RS18895 0.69 +0.5 596,586 + ABZR87_RS18895 0.69 -0.8 596,702 + ABZR87_RS18895 0.73 -0.2 596,703 - ABZR87_RS18895 0.73 +0.2 596,771 + ABZR87_RS18895 0.76 +0.1 596,827 + ABZR87_RS18895 0.78 +0.7 596,827 + ABZR87_RS18895 0.78 -0.5 596,827 + ABZR87_RS18895 0.78 -1.0 596,827 + ABZR87_RS18895 0.78 -0.6 596,828 - ABZR87_RS18895 0.78 -0.3 596,828 - ABZR87_RS18895 0.78 +0.2 596,828 - ABZR87_RS18895 0.78 +0.0 596,947 - ABZR87_RS18895 0.83 +0.0 597,078 - ABZR87_RS18895 0.88 -1.2 597,105 - ABZR87_RS18895 0.89 +1.0 597,118 + ABZR87_RS18895 0.90 +0.0 597,119 - +0.5 597,119 - -0.1 597,119 - +0.5 597,285 + +0.8 597,285 + -2.0 597,286 - -0.3 597,286 - +0.2 597,286 - -0.3 597,286 - +0.4 597,508 + -0.5 597,508 + -1.6 597,508 + +0.7 597,508 + -0.2 597,509 - +0.0 597,509 - -1.5 597,638 + ABZR87_RS18900 0.16 +0.4 597,901 + ABZR87_RS18900 0.32 -0.2 597,902 - ABZR87_RS18900 0.32 +0.8 597,940 - ABZR87_RS18900 0.34 +0.5 597,964 + ABZR87_RS18900 0.36 +0.3 597,965 - ABZR87_RS18900 0.36 -0.3 597,987 - ABZR87_RS18900 0.37 -0.6 598,013 - ABZR87_RS18900 0.39 -0.6 598,150 + ABZR87_RS18900 0.47 +0.3 598,150 + ABZR87_RS18900 0.47 -0.3 598,150 + ABZR87_RS18900 0.47 +1.3 598,280 + ABZR87_RS18900 0.55 +0.0 598,363 + ABZR87_RS18900 0.60 +0.4 598,363 + ABZR87_RS18900 0.60 +0.1 598,363 + ABZR87_RS18900 0.60 -0.6 598,364 - ABZR87_RS18900 0.60 +0.6
Or see this region's nucleotide sequence