Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18800

Experiment: no_plant_soil sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18795 and ABZR87_RS18800 are separated by 12 nucleotidesABZR87_RS18800 and ABZR87_RS18805 are separated by 184 nucleotides ABZR87_RS18795: ABZR87_RS18795 - MDR family MFS transporter, at 568,798 to 570,390 _RS18795 ABZR87_RS18800: ABZR87_RS18800 - oxygenase MpaB family protein, at 570,403 to 571,299 _RS18800 ABZR87_RS18805: ABZR87_RS18805 - hypothetical protein, at 571,484 to 572,410 _RS18805 Position (kb) 570 571 572Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 569.582 kb on + strand, within ABZR87_RS18795at 569.582 kb on + strand, within ABZR87_RS18795at 569.582 kb on + strand, within ABZR87_RS18795at 569.582 kb on + strand, within ABZR87_RS18795at 569.582 kb on + strand, within ABZR87_RS18795at 569.582 kb on + strand, within ABZR87_RS18795at 569.582 kb on + strand, within ABZR87_RS18795at 569.582 kb on + strand, within ABZR87_RS18795at 569.582 kb on + strand, within ABZR87_RS18795at 569.583 kb on - strand, within ABZR87_RS18795at 569.583 kb on - strand, within ABZR87_RS18795at 569.583 kb on - strand, within ABZR87_RS18795at 569.583 kb on - strand, within ABZR87_RS18795at 569.588 kb on + strand, within ABZR87_RS18795at 569.589 kb on - strand, within ABZR87_RS18795at 569.878 kb on + strand, within ABZR87_RS18795at 569.878 kb on + strand, within ABZR87_RS18795at 569.879 kb on - strand, within ABZR87_RS18795at 570.388 kb on + strandat 570.388 kb on + strandat 570.389 kb on - strandat 570.404 kb on + strandat 570.707 kb on + strand, within ABZR87_RS18800at 570.707 kb on + strand, within ABZR87_RS18800at 570.708 kb on - strand, within ABZR87_RS18800at 570.708 kb on - strand, within ABZR87_RS18800at 570.708 kb on - strand, within ABZR87_RS18800at 570.708 kb on - strand, within ABZR87_RS18800at 570.785 kb on + strand, within ABZR87_RS18800at 570.824 kb on + strand, within ABZR87_RS18800at 570.824 kb on + strand, within ABZR87_RS18800at 570.824 kb on + strand, within ABZR87_RS18800at 570.824 kb on + strand, within ABZR87_RS18800at 570.825 kb on - strand, within ABZR87_RS18800at 570.825 kb on - strand, within ABZR87_RS18800at 570.825 kb on - strand, within ABZR87_RS18800at 570.833 kb on + strand, within ABZR87_RS18800at 570.833 kb on + strand, within ABZR87_RS18800at 570.833 kb on + strand, within ABZR87_RS18800at 570.992 kb on + strand, within ABZR87_RS18800at 570.992 kb on + strand, within ABZR87_RS18800at 570.992 kb on + strand, within ABZR87_RS18800at 570.992 kb on + strand, within ABZR87_RS18800at 570.992 kb on + strand, within ABZR87_RS18800at 570.992 kb on + strand, within ABZR87_RS18800at 570.993 kb on - strand, within ABZR87_RS18800at 570.993 kb on - strand, within ABZR87_RS18800at 570.993 kb on - strand, within ABZR87_RS18800at 570.993 kb on - strand, within ABZR87_RS18800at 571.454 kb on + strandat 571.454 kb on + strandat 571.455 kb on - strandat 571.455 kb on - strandat 571.489 kb on + strandat 571.489 kb on + strandat 571.489 kb on + strandat 571.489 kb on + strandat 571.489 kb on + strandat 571.490 kb on - strandat 571.490 kb on - strandat 571.490 kb on - strandat 571.490 kb on - strandat 571.490 kb on - strandat 571.490 kb on - strandat 571.490 kb on - strandat 571.490 kb on - strandat 571.490 kb on - strandat 571.490 kb on - strandat 571.490 kb on - strandat 571.507 kb on + strandat 571.508 kb on - strandat 571.508 kb on - strandat 571.508 kb on - strandat 571.610 kb on + strand, within ABZR87_RS18805at 571.610 kb on + strand, within ABZR87_RS18805at 571.611 kb on - strand, within ABZR87_RS18805at 571.611 kb on - strand, within ABZR87_RS18805at 571.611 kb on - strand, within ABZR87_RS18805at 571.706 kb on + strand, within ABZR87_RS18805at 571.706 kb on + strand, within ABZR87_RS18805at 571.706 kb on + strand, within ABZR87_RS18805at 571.706 kb on + strand, within ABZR87_RS18805at 571.706 kb on + strand, within ABZR87_RS18805at 571.706 kb on + strand, within ABZR87_RS18805at 571.706 kb on + strand, within ABZR87_RS18805at 571.706 kb on + strand, within ABZR87_RS18805at 571.706 kb on + strand, within ABZR87_RS18805at 571.706 kb on + strand, within ABZR87_RS18805at 571.706 kb on + strand, within ABZR87_RS18805at 571.706 kb on + strand, within ABZR87_RS18805at 571.706 kb on + strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.708 kb on + strand, within ABZR87_RS18805at 571.708 kb on + strand, within ABZR87_RS18805at 571.708 kb on + strand, within ABZR87_RS18805at 571.808 kb on - strand, within ABZR87_RS18805at 571.808 kb on - strand, within ABZR87_RS18805at 571.808 kb on - strand, within ABZR87_RS18805at 571.814 kb on + strand, within ABZR87_RS18805at 571.814 kb on + strand, within ABZR87_RS18805at 571.815 kb on - strand, within ABZR87_RS18805at 571.815 kb on - strand, within ABZR87_RS18805at 571.917 kb on - strand, within ABZR87_RS18805at 571.943 kb on + strand, within ABZR87_RS18805at 571.994 kb on + strand, within ABZR87_RS18805at 571.995 kb on - strand, within ABZR87_RS18805at 572.060 kb on + strand, within ABZR87_RS18805at 572.060 kb on + strand, within ABZR87_RS18805at 572.060 kb on + strand, within ABZR87_RS18805at 572.060 kb on + strand, within ABZR87_RS18805at 572.060 kb on + strand, within ABZR87_RS18805at 572.060 kb on + strand, within ABZR87_RS18805at 572.060 kb on + strand, within ABZR87_RS18805at 572.060 kb on + strand, within ABZR87_RS18805at 572.061 kb on - strand, within ABZR87_RS18805at 572.061 kb on - strand, within ABZR87_RS18805at 572.066 kb on + strand, within ABZR87_RS18805at 572.066 kb on + strand, within ABZR87_RS18805at 572.066 kb on + strand, within ABZR87_RS18805at 572.066 kb on + strand, within ABZR87_RS18805at 572.067 kb on - strand, within ABZR87_RS18805at 572.067 kb on - strand, within ABZR87_RS18805at 572.067 kb on - strand, within ABZR87_RS18805at 572.105 kb on + strand, within ABZR87_RS18805at 572.105 kb on + strand, within ABZR87_RS18805at 572.105 kb on + strand, within ABZR87_RS18805at 572.105 kb on + strand, within ABZR87_RS18805at 572.105 kb on + strand, within ABZR87_RS18805at 572.105 kb on + strand, within ABZR87_RS18805at 572.105 kb on + strand, within ABZR87_RS18805at 572.105 kb on + strand, within ABZR87_RS18805at 572.105 kb on + strand, within ABZR87_RS18805at 572.106 kb on - strand, within ABZR87_RS18805at 572.106 kb on - strand, within ABZR87_RS18805at 572.106 kb on - strand, within ABZR87_RS18805at 572.106 kb on - strand, within ABZR87_RS18805at 572.106 kb on - strand, within ABZR87_RS18805at 572.106 kb on - strand, within ABZR87_RS18805at 572.107 kb on - strand, within ABZR87_RS18805at 572.141 kb on - strand, within ABZR87_RS18805at 572.141 kb on - strand, within ABZR87_RS18805at 572.180 kb on + strand, within ABZR87_RS18805at 572.180 kb on + strand, within ABZR87_RS18805at 572.180 kb on + strand, within ABZR87_RS18805at 572.226 kb on - strand, within ABZR87_RS18805at 572.226 kb on - strand, within ABZR87_RS18805at 572.228 kb on + strand, within ABZR87_RS18805at 572.228 kb on + strand, within ABZR87_RS18805at 572.228 kb on + strand, within ABZR87_RS18805at 572.228 kb on + strand, within ABZR87_RS18805at 572.229 kb on - strand, within ABZR87_RS18805at 572.246 kb on + strand, within ABZR87_RS18805

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB
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569,582 + ABZR87_RS18795 0.49 -1.0
569,582 + ABZR87_RS18795 0.49 +0.3
569,582 + ABZR87_RS18795 0.49 +0.1
569,582 + ABZR87_RS18795 0.49 -0.0
569,582 + ABZR87_RS18795 0.49 -0.2
569,582 + ABZR87_RS18795 0.49 -0.2
569,582 + ABZR87_RS18795 0.49 -1.4
569,582 + ABZR87_RS18795 0.49 +1.9
569,582 + ABZR87_RS18795 0.49 +0.7
569,583 - ABZR87_RS18795 0.49 -0.8
569,583 - ABZR87_RS18795 0.49 -0.4
569,583 - ABZR87_RS18795 0.49 -0.4
569,583 - ABZR87_RS18795 0.49 +0.6
569,588 + ABZR87_RS18795 0.50 +0.6
569,589 - ABZR87_RS18795 0.50 +0.4
569,878 + ABZR87_RS18795 0.68 -0.4
569,878 + ABZR87_RS18795 0.68 +1.2
569,879 - ABZR87_RS18795 0.68 -0.3
570,388 + +0.3
570,388 + +0.1
570,389 - +0.8
570,404 + +0.0
570,707 + ABZR87_RS18800 0.34 -1.0
570,707 + ABZR87_RS18800 0.34 -0.7
570,708 - ABZR87_RS18800 0.34 -0.3
570,708 - ABZR87_RS18800 0.34 -0.6
570,708 - ABZR87_RS18800 0.34 +0.8
570,708 - ABZR87_RS18800 0.34 +0.0
570,785 + ABZR87_RS18800 0.43 +0.3
570,824 + ABZR87_RS18800 0.47 -0.1
570,824 + ABZR87_RS18800 0.47 -1.9
570,824 + ABZR87_RS18800 0.47 +0.4
570,824 + ABZR87_RS18800 0.47 -0.8
570,825 - ABZR87_RS18800 0.47 -0.9
570,825 - ABZR87_RS18800 0.47 -0.1
570,825 - ABZR87_RS18800 0.47 +0.3
570,833 + ABZR87_RS18800 0.48 -0.6
570,833 + ABZR87_RS18800 0.48 -0.8
570,833 + ABZR87_RS18800 0.48 -0.0
570,992 + ABZR87_RS18800 0.66 -0.7
570,992 + ABZR87_RS18800 0.66 +0.4
570,992 + ABZR87_RS18800 0.66 +1.0
570,992 + ABZR87_RS18800 0.66 +0.0
570,992 + ABZR87_RS18800 0.66 -0.5
570,992 + ABZR87_RS18800 0.66 -1.8
570,993 - ABZR87_RS18800 0.66 -2.8
570,993 - ABZR87_RS18800 0.66 -0.8
570,993 - ABZR87_RS18800 0.66 +1.6
570,993 - ABZR87_RS18800 0.66 -0.4
571,454 + -0.0
571,454 + -1.4
571,455 - -0.9
571,455 - +0.8
571,489 + -0.7
571,489 + +1.6
571,489 + -0.3
571,489 + -0.6
571,489 + +0.2
571,490 - +0.1
571,490 - +0.2
571,490 - +0.7
571,490 - +0.1
571,490 - +0.3
571,490 - +1.5
571,490 - -0.3
571,490 - +0.4
571,490 - -2.0
571,490 - -2.6
571,490 - +0.6
571,507 + +1.1
571,508 - -0.3
571,508 - -0.6
571,508 - -0.8
571,610 + ABZR87_RS18805 0.14 -1.4
571,610 + ABZR87_RS18805 0.14 +0.2
571,611 - ABZR87_RS18805 0.14 -0.2
571,611 - ABZR87_RS18805 0.14 -0.2
571,611 - ABZR87_RS18805 0.14 -0.7
571,706 + ABZR87_RS18805 0.24 +0.3
571,706 + ABZR87_RS18805 0.24 +0.8
571,706 + ABZR87_RS18805 0.24 -0.2
571,706 + ABZR87_RS18805 0.24 -2.0
571,706 + ABZR87_RS18805 0.24 -0.4
571,706 + ABZR87_RS18805 0.24 +0.7
571,706 + ABZR87_RS18805 0.24 +2.2
571,706 + ABZR87_RS18805 0.24 +4.6
571,706 + ABZR87_RS18805 0.24 -0.2
571,706 + ABZR87_RS18805 0.24 -0.2
571,706 + ABZR87_RS18805 0.24 +0.5
571,706 + ABZR87_RS18805 0.24 -0.7
571,706 + ABZR87_RS18805 0.24 -0.4
571,707 - ABZR87_RS18805 0.24 +0.7
571,707 - ABZR87_RS18805 0.24 +0.6
571,707 - ABZR87_RS18805 0.24 +0.3
571,707 - ABZR87_RS18805 0.24 -1.0
571,707 - ABZR87_RS18805 0.24 -1.1
571,707 - ABZR87_RS18805 0.24 +0.3
571,707 - ABZR87_RS18805 0.24 +0.5
571,707 - ABZR87_RS18805 0.24 +0.5
571,707 - ABZR87_RS18805 0.24 -0.5
571,707 - ABZR87_RS18805 0.24 -0.4
571,707 - ABZR87_RS18805 0.24 +0.3
571,707 - ABZR87_RS18805 0.24 -0.3
571,707 - ABZR87_RS18805 0.24 -0.5
571,707 - ABZR87_RS18805 0.24 +0.3
571,707 - ABZR87_RS18805 0.24 -0.7
571,707 - ABZR87_RS18805 0.24 -0.3
571,707 - ABZR87_RS18805 0.24 +0.4
571,708 + ABZR87_RS18805 0.24 -0.3
571,708 + ABZR87_RS18805 0.24 +0.5
571,708 + ABZR87_RS18805 0.24 +0.1
571,808 - ABZR87_RS18805 0.35 +0.6
571,808 - ABZR87_RS18805 0.35 +0.6
571,808 - ABZR87_RS18805 0.35 +0.8
571,814 + ABZR87_RS18805 0.36 +0.3
571,814 + ABZR87_RS18805 0.36 +0.7
571,815 - ABZR87_RS18805 0.36 -0.7
571,815 - ABZR87_RS18805 0.36 -0.1
571,917 - ABZR87_RS18805 0.47 +0.9
571,943 + ABZR87_RS18805 0.50 -0.6
571,994 + ABZR87_RS18805 0.55 -0.8
571,995 - ABZR87_RS18805 0.55 +0.6
572,060 + ABZR87_RS18805 0.62 -0.5
572,060 + ABZR87_RS18805 0.62 -1.3
572,060 + ABZR87_RS18805 0.62 +0.6
572,060 + ABZR87_RS18805 0.62 +2.1
572,060 + ABZR87_RS18805 0.62 +0.2
572,060 + ABZR87_RS18805 0.62 +0.6
572,060 + ABZR87_RS18805 0.62 -0.0
572,060 + ABZR87_RS18805 0.62 +0.5
572,061 - ABZR87_RS18805 0.62 -0.4
572,061 - ABZR87_RS18805 0.62 +0.3
572,066 + ABZR87_RS18805 0.63 +0.6
572,066 + ABZR87_RS18805 0.63 +0.3
572,066 + ABZR87_RS18805 0.63 -0.1
572,066 + ABZR87_RS18805 0.63 -0.6
572,067 - ABZR87_RS18805 0.63 -1.2
572,067 - ABZR87_RS18805 0.63 +0.0
572,067 - ABZR87_RS18805 0.63 +1.0
572,105 + ABZR87_RS18805 0.67 -0.2
572,105 + ABZR87_RS18805 0.67 +0.1
572,105 + ABZR87_RS18805 0.67 +0.5
572,105 + ABZR87_RS18805 0.67 -0.4
572,105 + ABZR87_RS18805 0.67 +0.7
572,105 + ABZR87_RS18805 0.67 -1.0
572,105 + ABZR87_RS18805 0.67 +0.4
572,105 + ABZR87_RS18805 0.67 +0.3
572,105 + ABZR87_RS18805 0.67 +0.3
572,106 - ABZR87_RS18805 0.67 -0.4
572,106 - ABZR87_RS18805 0.67 +0.3
572,106 - ABZR87_RS18805 0.67 +0.9
572,106 - ABZR87_RS18805 0.67 -0.3
572,106 - ABZR87_RS18805 0.67 +0.5
572,106 - ABZR87_RS18805 0.67 +0.6
572,107 - ABZR87_RS18805 0.67 -1.8
572,141 - ABZR87_RS18805 0.71 +0.5
572,141 - ABZR87_RS18805 0.71 -0.5
572,180 + ABZR87_RS18805 0.75 -0.4
572,180 + ABZR87_RS18805 0.75 +0.7
572,180 + ABZR87_RS18805 0.75 +0.4
572,226 - ABZR87_RS18805 0.80 +1.1
572,226 - ABZR87_RS18805 0.80 -0.2
572,228 + ABZR87_RS18805 0.80 +0.6
572,228 + ABZR87_RS18805 0.80 +0.1
572,228 + ABZR87_RS18805 0.80 -0.6
572,228 + ABZR87_RS18805 0.80 +0.2
572,229 - ABZR87_RS18805 0.80 +0.3
572,246 + ABZR87_RS18805 0.82 +0.1

Or see this region's nucleotide sequence