Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18290

Experiment: no_plant_soil sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18285 and ABZR87_RS18290 are separated by 40 nucleotidesABZR87_RS18290 and ABZR87_RS18295 are separated by 72 nucleotidesABZR87_RS18295 and ABZR87_RS18300 are separated by 177 nucleotides ABZR87_RS18285: ABZR87_RS18285 - helix-turn-helix domain-containing protein, at 471,995 to 472,981 _RS18285 ABZR87_RS18290: ABZR87_RS18290 - glycine zipper 2TM domain-containing protein, at 473,022 to 473,204 _RS18290 ABZR87_RS18295: ABZR87_RS18295 - YggT family protein, at 473,277 to 473,837 _RS18295 ABZR87_RS18300: ABZR87_RS18300 - YbhB/YbcL family Raf kinase inhibitor-like protein, at 474,015 to 474,578 _RS18300 Position (kb) 473 474Strain fitness (log2 ratio) -3 -2 -1 0 1at 472.038 kb on + strandat 472.038 kb on + strandat 472.038 kb on + strandat 472.039 kb on - strandat 472.039 kb on - strandat 472.046 kb on - strandat 472.121 kb on + strand, within ABZR87_RS18285at 472.121 kb on + strand, within ABZR87_RS18285at 472.121 kb on + strand, within ABZR87_RS18285at 472.121 kb on + strand, within ABZR87_RS18285at 472.122 kb on - strand, within ABZR87_RS18285at 472.122 kb on - strand, within ABZR87_RS18285at 472.122 kb on - strand, within ABZR87_RS18285at 472.259 kb on - strand, within ABZR87_RS18285at 472.259 kb on - strand, within ABZR87_RS18285at 472.307 kb on + strand, within ABZR87_RS18285at 472.307 kb on + strand, within ABZR87_RS18285at 472.307 kb on + strand, within ABZR87_RS18285at 472.307 kb on + strand, within ABZR87_RS18285at 472.308 kb on - strand, within ABZR87_RS18285at 472.440 kb on + strand, within ABZR87_RS18285at 472.441 kb on - strand, within ABZR87_RS18285at 472.441 kb on - strand, within ABZR87_RS18285at 472.463 kb on + strand, within ABZR87_RS18285at 472.464 kb on - strand, within ABZR87_RS18285at 472.464 kb on - strand, within ABZR87_RS18285at 472.464 kb on - strand, within ABZR87_RS18285at 472.625 kb on + strand, within ABZR87_RS18285at 472.625 kb on + strand, within ABZR87_RS18285at 472.625 kb on + strand, within ABZR87_RS18285at 472.626 kb on - strand, within ABZR87_RS18285at 472.626 kb on - strand, within ABZR87_RS18285at 472.626 kb on - strand, within ABZR87_RS18285at 472.829 kb on + strand, within ABZR87_RS18285at 472.934 kb on + strandat 472.934 kb on + strandat 472.934 kb on + strandat 472.935 kb on - strandat 472.935 kb on - strandat 472.935 kb on - strandat 472.935 kb on - strandat 472.955 kb on + strandat 473.023 kb on + strandat 473.023 kb on + strandat 473.024 kb on - strandat 473.024 kb on - strandat 473.024 kb on - strandat 473.070 kb on + strand, within ABZR87_RS18290at 473.071 kb on - strand, within ABZR87_RS18290at 473.071 kb on - strand, within ABZR87_RS18290at 473.071 kb on - strand, within ABZR87_RS18290at 473.178 kb on + strand, within ABZR87_RS18290at 473.179 kb on - strand, within ABZR87_RS18290at 473.179 kb on - strand, within ABZR87_RS18290at 473.245 kb on + strandat 473.246 kb on - strandat 473.246 kb on - strandat 473.605 kb on + strand, within ABZR87_RS18295at 473.606 kb on - strand, within ABZR87_RS18295at 473.606 kb on - strand, within ABZR87_RS18295at 473.606 kb on - strand, within ABZR87_RS18295at 473.623 kb on + strand, within ABZR87_RS18295at 473.624 kb on - strand, within ABZR87_RS18295at 473.652 kb on - strand, within ABZR87_RS18295at 473.653 kb on + strand, within ABZR87_RS18295at 473.653 kb on + strand, within ABZR87_RS18295at 473.654 kb on - strand, within ABZR87_RS18295at 473.654 kb on - strand, within ABZR87_RS18295at 473.654 kb on - strand, within ABZR87_RS18295at 473.654 kb on - strand, within ABZR87_RS18295at 473.654 kb on - strand, within ABZR87_RS18295at 473.826 kb on - strandat 473.971 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB
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472,038 + -0.2
472,038 + -0.4
472,038 + +0.4
472,039 - +1.2
472,039 - -1.0
472,046 - +0.3
472,121 + ABZR87_RS18285 0.13 -0.7
472,121 + ABZR87_RS18285 0.13 -0.1
472,121 + ABZR87_RS18285 0.13 +0.6
472,121 + ABZR87_RS18285 0.13 +1.4
472,122 - ABZR87_RS18285 0.13 -0.7
472,122 - ABZR87_RS18285 0.13 -0.2
472,122 - ABZR87_RS18285 0.13 +0.5
472,259 - ABZR87_RS18285 0.27 -0.0
472,259 - ABZR87_RS18285 0.27 +0.8
472,307 + ABZR87_RS18285 0.32 -1.2
472,307 + ABZR87_RS18285 0.32 -0.9
472,307 + ABZR87_RS18285 0.32 -0.4
472,307 + ABZR87_RS18285 0.32 +0.3
472,308 - ABZR87_RS18285 0.32 -0.3
472,440 + ABZR87_RS18285 0.45 -0.1
472,441 - ABZR87_RS18285 0.45 -0.2
472,441 - ABZR87_RS18285 0.45 +0.3
472,463 + ABZR87_RS18285 0.47 -0.4
472,464 - ABZR87_RS18285 0.48 +1.2
472,464 - ABZR87_RS18285 0.48 +0.3
472,464 - ABZR87_RS18285 0.48 -2.4
472,625 + ABZR87_RS18285 0.64 -1.5
472,625 + ABZR87_RS18285 0.64 +0.9
472,625 + ABZR87_RS18285 0.64 +0.5
472,626 - ABZR87_RS18285 0.64 +0.3
472,626 - ABZR87_RS18285 0.64 +1.3
472,626 - ABZR87_RS18285 0.64 -1.4
472,829 + ABZR87_RS18285 0.84 -3.2
472,934 + +1.1
472,934 + -0.4
472,934 + -1.6
472,935 - +0.1
472,935 - +0.2
472,935 - -0.4
472,935 - +0.1
472,955 + -0.5
473,023 + +0.2
473,023 + -0.0
473,024 - -0.9
473,024 - -0.2
473,024 - +1.2
473,070 + ABZR87_RS18290 0.26 -0.9
473,071 - ABZR87_RS18290 0.27 -1.2
473,071 - ABZR87_RS18290 0.27 -1.0
473,071 - ABZR87_RS18290 0.27 +0.4
473,178 + ABZR87_RS18290 0.85 -0.8
473,179 - ABZR87_RS18290 0.86 -0.7
473,179 - ABZR87_RS18290 0.86 -0.5
473,245 + +0.1
473,246 - -0.9
473,246 - -1.0
473,605 + ABZR87_RS18295 0.58 -2.8
473,606 - ABZR87_RS18295 0.59 -0.7
473,606 - ABZR87_RS18295 0.59 -1.1
473,606 - ABZR87_RS18295 0.59 -0.1
473,623 + ABZR87_RS18295 0.62 +0.7
473,624 - ABZR87_RS18295 0.62 -0.0
473,652 - ABZR87_RS18295 0.67 -0.1
473,653 + ABZR87_RS18295 0.67 +0.4
473,653 + ABZR87_RS18295 0.67 +0.7
473,654 - ABZR87_RS18295 0.67 -0.3
473,654 - ABZR87_RS18295 0.67 -0.5
473,654 - ABZR87_RS18295 0.67 -0.3
473,654 - ABZR87_RS18295 0.67 -2.0
473,654 - ABZR87_RS18295 0.67 -2.4
473,826 - +0.4
473,971 + -0.3

Or see this region's nucleotide sequence