Experiment: no_plant_soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17990 and ABZR87_RS17995 are separated by 149 nucleotides ABZR87_RS17995 and ABZR87_RS18000 overlap by 1 nucleotides ABZR87_RS18000 and ABZR87_RS18005 are separated by 75 nucleotides
ABZR87_RS17990: ABZR87_RS17990 - chemotaxis response regulator protein-glutamate methylesterase, at 391,517 to 392,638
_RS17990
ABZR87_RS17995: ABZR87_RS17995 - chemotaxis response regulator CheY, at 392,788 to 393,189
_RS17995
ABZR87_RS18000: ABZR87_RS18000 - protein phosphatase CheZ, at 393,189 to 393,857
_RS18000
ABZR87_RS18005: ABZR87_RS18005 - formylglycine-generating enzyme family protein, at 393,933 to 395,036
_RS18005
Position (kb) 392
393
394 Strain fitness (log2 ratio) -2
-1
0
1 at 392.261 kb on + strand, within ABZR87_RS17990 at 392.262 kb on - strand, within ABZR87_RS17990 at 392.262 kb on - strand, within ABZR87_RS17990 at 392.312 kb on + strand, within ABZR87_RS17990 at 392.312 kb on + strand, within ABZR87_RS17990 at 392.313 kb on - strand, within ABZR87_RS17990 at 392.313 kb on - strand, within ABZR87_RS17990 at 392.313 kb on - strand, within ABZR87_RS17990 at 392.313 kb on - strand, within ABZR87_RS17990 at 392.313 kb on - strand, within ABZR87_RS17990 at 392.483 kb on + strand, within ABZR87_RS17990 at 392.483 kb on + strand, within ABZR87_RS17990 at 392.484 kb on - strand, within ABZR87_RS17990 at 392.484 kb on - strand, within ABZR87_RS17990 at 392.484 kb on - strand, within ABZR87_RS17990 at 392.484 kb on - strand, within ABZR87_RS17990 at 392.519 kb on + strand, within ABZR87_RS17990 at 392.637 kb on - strand at 392.655 kb on + strand at 392.655 kb on + strand at 392.656 kb on - strand at 392.656 kb on - strand at 392.730 kb on - strand at 392.766 kb on + strand at 392.854 kb on - strand, within ABZR87_RS17995 at 393.126 kb on + strand, within ABZR87_RS17995 at 393.127 kb on - strand, within ABZR87_RS17995 at 393.378 kb on + strand, within ABZR87_RS18000 at 393.379 kb on - strand, within ABZR87_RS18000 at 393.379 kb on - strand, within ABZR87_RS18000 at 393.379 kb on - strand, within ABZR87_RS18000 at 393.379 kb on - strand, within ABZR87_RS18000 at 394.168 kb on + strand, within ABZR87_RS18005 at 394.169 kb on - strand, within ABZR87_RS18005 at 394.169 kb on - strand, within ABZR87_RS18005
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB remove 392,261 + ABZR87_RS17990 0.66 -0.6 392,262 - ABZR87_RS17990 0.66 -0.4 392,262 - ABZR87_RS17990 0.66 -0.5 392,312 + ABZR87_RS17990 0.71 -0.6 392,312 + ABZR87_RS17990 0.71 -1.2 392,313 - ABZR87_RS17990 0.71 +0.0 392,313 - ABZR87_RS17990 0.71 -0.6 392,313 - ABZR87_RS17990 0.71 +0.6 392,313 - ABZR87_RS17990 0.71 +0.0 392,313 - ABZR87_RS17990 0.71 -0.5 392,483 + ABZR87_RS17990 0.86 -1.2 392,483 + ABZR87_RS17990 0.86 -2.4 392,484 - ABZR87_RS17990 0.86 -0.1 392,484 - ABZR87_RS17990 0.86 -0.0 392,484 - ABZR87_RS17990 0.86 -0.9 392,484 - ABZR87_RS17990 0.86 -0.0 392,519 + ABZR87_RS17990 0.89 +1.3 392,637 - -0.7 392,655 + -0.8 392,655 + -0.0 392,656 - -0.6 392,656 - -1.0 392,730 - -1.2 392,766 + -1.0 392,854 - ABZR87_RS17995 0.16 -0.6 393,126 + ABZR87_RS17995 0.84 -0.9 393,127 - ABZR87_RS17995 0.84 -0.3 393,378 + ABZR87_RS18000 0.28 -0.2 393,379 - ABZR87_RS18000 0.28 -0.2 393,379 - ABZR87_RS18000 0.28 +0.1 393,379 - ABZR87_RS18000 0.28 +0.9 393,379 - ABZR87_RS18000 0.28 -0.0 394,168 + ABZR87_RS18005 0.21 +1.6 394,169 - ABZR87_RS18005 0.21 -0.6 394,169 - ABZR87_RS18005 0.21 -0.1
Or see this region's nucleotide sequence