Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17870

Experiment: no_plant_soil sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17865 and ABZR87_RS17870 are separated by 43 nucleotidesABZR87_RS17870 and ABZR87_RS17875 are separated by 414 nucleotides ABZR87_RS17865: ABZR87_RS17865 - cation:proton antiporter, at 365,145 to 366,362 _RS17865 ABZR87_RS17870: ABZR87_RS17870 - NADPH-dependent FMN reductase, at 366,406 to 366,960 _RS17870 ABZR87_RS17875: ABZR87_RS17875 - hypothetical protein, at 367,375 to 368,058 _RS17875 Position (kb) 366 367Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 365.500 kb on + strand, within ABZR87_RS17865at 365.564 kb on + strand, within ABZR87_RS17865at 366.544 kb on + strand, within ABZR87_RS17870at 366.544 kb on + strand, within ABZR87_RS17870at 366.544 kb on + strand, within ABZR87_RS17870at 366.545 kb on - strand, within ABZR87_RS17870at 366.545 kb on - strand, within ABZR87_RS17870at 366.581 kb on + strand, within ABZR87_RS17870at 366.581 kb on + strand, within ABZR87_RS17870at 366.582 kb on - strand, within ABZR87_RS17870at 366.623 kb on + strand, within ABZR87_RS17870at 366.623 kb on + strand, within ABZR87_RS17870at 366.623 kb on + strand, within ABZR87_RS17870at 366.624 kb on - strand, within ABZR87_RS17870at 366.640 kb on + strand, within ABZR87_RS17870at 366.641 kb on - strand, within ABZR87_RS17870at 366.641 kb on - strand, within ABZR87_RS17870at 366.641 kb on - strand, within ABZR87_RS17870at 366.785 kb on + strand, within ABZR87_RS17870at 366.785 kb on + strand, within ABZR87_RS17870at 366.785 kb on + strand, within ABZR87_RS17870at 366.786 kb on - strand, within ABZR87_RS17870at 366.786 kb on - strand, within ABZR87_RS17870at 366.786 kb on - strand, within ABZR87_RS17870at 366.786 kb on - strand, within ABZR87_RS17870at 366.789 kb on + strand, within ABZR87_RS17870at 366.789 kb on + strand, within ABZR87_RS17870at 366.789 kb on + strand, within ABZR87_RS17870at 366.789 kb on + strand, within ABZR87_RS17870at 366.789 kb on + strand, within ABZR87_RS17870at 366.790 kb on - strand, within ABZR87_RS17870at 366.790 kb on - strand, within ABZR87_RS17870at 366.790 kb on - strand, within ABZR87_RS17870at 366.790 kb on - strand, within ABZR87_RS17870at 367.026 kb on + strandat 367.026 kb on + strandat 367.026 kb on + strandat 367.027 kb on - strandat 367.046 kb on + strandat 367.046 kb on + strandat 367.046 kb on + strandat 367.046 kb on + strandat 367.047 kb on - strandat 367.047 kb on - strandat 367.126 kb on - strandat 367.153 kb on + strandat 367.153 kb on + strandat 367.153 kb on + strandat 367.154 kb on - strandat 367.210 kb on + strandat 367.211 kb on - strandat 367.211 kb on - strandat 367.211 kb on - strandat 367.211 kb on - strandat 367.211 kb on - strandat 367.211 kb on - strandat 367.235 kb on + strandat 367.235 kb on + strandat 367.267 kb on + strandat 367.267 kb on + strandat 367.268 kb on - strandat 367.268 kb on - strandat 367.268 kb on - strandat 367.275 kb on + strandat 367.376 kb on + strandat 367.465 kb on + strand, within ABZR87_RS17875at 367.465 kb on + strand, within ABZR87_RS17875at 367.466 kb on - strand, within ABZR87_RS17875at 367.466 kb on - strand, within ABZR87_RS17875at 367.466 kb on - strand, within ABZR87_RS17875at 367.478 kb on + strand, within ABZR87_RS17875at 367.478 kb on + strand, within ABZR87_RS17875at 367.478 kb on + strand, within ABZR87_RS17875at 367.478 kb on + strand, within ABZR87_RS17875at 367.478 kb on + strand, within ABZR87_RS17875at 367.479 kb on - strand, within ABZR87_RS17875at 367.506 kb on - strand, within ABZR87_RS17875at 367.559 kb on + strand, within ABZR87_RS17875at 367.559 kb on + strand, within ABZR87_RS17875at 367.560 kb on - strand, within ABZR87_RS17875at 367.560 kb on - strand, within ABZR87_RS17875at 367.706 kb on + strand, within ABZR87_RS17875at 367.707 kb on - strand, within ABZR87_RS17875at 367.742 kb on - strand, within ABZR87_RS17875at 367.742 kb on - strand, within ABZR87_RS17875at 367.761 kb on + strand, within ABZR87_RS17875at 367.762 kb on - strand, within ABZR87_RS17875at 367.928 kb on + strand, within ABZR87_RS17875at 367.928 kb on + strand, within ABZR87_RS17875at 367.928 kb on + strand, within ABZR87_RS17875

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB
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365,500 + ABZR87_RS17865 0.29 -0.7
365,564 + ABZR87_RS17865 0.34 +1.5
366,544 + ABZR87_RS17870 0.25 -0.1
366,544 + ABZR87_RS17870 0.25 +0.8
366,544 + ABZR87_RS17870 0.25 -0.1
366,545 - ABZR87_RS17870 0.25 +0.2
366,545 - ABZR87_RS17870 0.25 +0.4
366,581 + ABZR87_RS17870 0.32 +0.0
366,581 + ABZR87_RS17870 0.32 +0.5
366,582 - ABZR87_RS17870 0.32 -0.2
366,623 + ABZR87_RS17870 0.39 +0.1
366,623 + ABZR87_RS17870 0.39 +0.0
366,623 + ABZR87_RS17870 0.39 -2.2
366,624 - ABZR87_RS17870 0.39 -0.6
366,640 + ABZR87_RS17870 0.42 +2.0
366,641 - ABZR87_RS17870 0.42 +0.6
366,641 - ABZR87_RS17870 0.42 +0.4
366,641 - ABZR87_RS17870 0.42 -0.3
366,785 + ABZR87_RS17870 0.68 +0.5
366,785 + ABZR87_RS17870 0.68 +0.1
366,785 + ABZR87_RS17870 0.68 +0.9
366,786 - ABZR87_RS17870 0.68 -0.8
366,786 - ABZR87_RS17870 0.68 -0.6
366,786 - ABZR87_RS17870 0.68 +0.8
366,786 - ABZR87_RS17870 0.68 -0.1
366,789 + ABZR87_RS17870 0.69 -1.3
366,789 + ABZR87_RS17870 0.69 +0.9
366,789 + ABZR87_RS17870 0.69 +1.2
366,789 + ABZR87_RS17870 0.69 +1.2
366,789 + ABZR87_RS17870 0.69 +0.4
366,790 - ABZR87_RS17870 0.69 +0.3
366,790 - ABZR87_RS17870 0.69 -0.0
366,790 - ABZR87_RS17870 0.69 -1.0
366,790 - ABZR87_RS17870 0.69 +0.7
367,026 + +0.3
367,026 + +0.4
367,026 + +3.8
367,027 - -0.0
367,046 + -1.2
367,046 + +0.8
367,046 + +0.6
367,046 + +1.3
367,047 - +0.4
367,047 - +0.4
367,126 - +0.2
367,153 + -0.5
367,153 + -0.2
367,153 + -1.1
367,154 - -0.4
367,210 + +0.2
367,211 - +0.6
367,211 - -0.8
367,211 - -0.0
367,211 - -2.7
367,211 - -0.2
367,211 - -1.7
367,235 + -0.3
367,235 + -0.6
367,267 + +1.0
367,267 + +1.0
367,268 - -1.8
367,268 - +0.2
367,268 - -0.9
367,275 + -0.8
367,376 + -1.8
367,465 + ABZR87_RS17875 0.13 -0.0
367,465 + ABZR87_RS17875 0.13 +1.2
367,466 - ABZR87_RS17875 0.13 -2.6
367,466 - ABZR87_RS17875 0.13 -0.3
367,466 - ABZR87_RS17875 0.13 -0.2
367,478 + ABZR87_RS17875 0.15 +0.8
367,478 + ABZR87_RS17875 0.15 -0.4
367,478 + ABZR87_RS17875 0.15 +0.5
367,478 + ABZR87_RS17875 0.15 -0.4
367,478 + ABZR87_RS17875 0.15 +0.9
367,479 - ABZR87_RS17875 0.15 +0.4
367,506 - ABZR87_RS17875 0.19 -1.1
367,559 + ABZR87_RS17875 0.27 +0.3
367,559 + ABZR87_RS17875 0.27 -0.3
367,560 - ABZR87_RS17875 0.27 -0.8
367,560 - ABZR87_RS17875 0.27 -0.3
367,706 + ABZR87_RS17875 0.48 +0.2
367,707 - ABZR87_RS17875 0.49 -0.3
367,742 - ABZR87_RS17875 0.54 -0.7
367,742 - ABZR87_RS17875 0.54 -1.0
367,761 + ABZR87_RS17875 0.56 +1.2
367,762 - ABZR87_RS17875 0.57 -0.1
367,928 + ABZR87_RS17875 0.81 -0.4
367,928 + ABZR87_RS17875 0.81 -0.5
367,928 + ABZR87_RS17875 0.81 +0.3

Or see this region's nucleotide sequence