Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17815

Experiment: no_plant_soil sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17810 and ABZR87_RS17815 overlap by 17 nucleotidesABZR87_RS17815 and ABZR87_RS17820 overlap by 4 nucleotidesABZR87_RS17820 and ABZR87_RS17825 overlap by 4 nucleotides ABZR87_RS17810: ABZR87_RS17810 - acyl-CoA desaturase, at 355,005 to 356,096 _RS17810 ABZR87_RS17815: ABZR87_RS17815 - sterol desaturase family protein, at 356,080 to 357,213 _RS17815 ABZR87_RS17820: ABZR87_RS17820 - phosphatase PAP2 family protein, at 357,210 to 357,833 _RS17820 ABZR87_RS17825: ABZR87_RS17825 - F390 synthetase-related protein, at 357,830 to 359,140 _RS17825 Position (kb) 356 357 358Strain fitness (log2 ratio) -2 -1 0 1at 355.081 kb on + strandat 355.113 kb on + strandat 355.114 kb on - strandat 355.114 kb on - strandat 355.114 kb on - strandat 355.114 kb on - strandat 355.148 kb on + strand, within ABZR87_RS17810at 355.148 kb on + strand, within ABZR87_RS17810at 355.149 kb on - strand, within ABZR87_RS17810at 355.149 kb on - strand, within ABZR87_RS17810at 355.150 kb on + strand, within ABZR87_RS17810at 355.151 kb on - strand, within ABZR87_RS17810at 355.151 kb on - strand, within ABZR87_RS17810at 355.151 kb on - strand, within ABZR87_RS17810at 355.202 kb on - strand, within ABZR87_RS17810at 355.297 kb on + strand, within ABZR87_RS17810at 355.297 kb on + strand, within ABZR87_RS17810at 355.298 kb on - strand, within ABZR87_RS17810at 355.298 kb on - strand, within ABZR87_RS17810at 355.376 kb on - strand, within ABZR87_RS17810at 355.552 kb on + strand, within ABZR87_RS17810at 355.552 kb on + strand, within ABZR87_RS17810at 355.552 kb on + strand, within ABZR87_RS17810at 355.553 kb on - strand, within ABZR87_RS17810at 355.553 kb on - strand, within ABZR87_RS17810at 355.553 kb on - strand, within ABZR87_RS17810at 355.567 kb on + strand, within ABZR87_RS17810at 355.567 kb on + strand, within ABZR87_RS17810at 355.567 kb on + strand, within ABZR87_RS17810at 355.567 kb on + strand, within ABZR87_RS17810at 355.568 kb on - strand, within ABZR87_RS17810at 355.568 kb on - strand, within ABZR87_RS17810at 355.568 kb on - strand, within ABZR87_RS17810at 355.568 kb on - strand, within ABZR87_RS17810at 355.684 kb on + strand, within ABZR87_RS17810at 355.684 kb on + strand, within ABZR87_RS17810at 355.685 kb on - strand, within ABZR87_RS17810at 355.685 kb on - strand, within ABZR87_RS17810at 355.714 kb on + strand, within ABZR87_RS17810at 355.714 kb on + strand, within ABZR87_RS17810at 355.715 kb on - strand, within ABZR87_RS17810at 355.739 kb on - strand, within ABZR87_RS17810at 355.879 kb on + strand, within ABZR87_RS17810at 355.879 kb on + strand, within ABZR87_RS17810at 355.928 kb on - strand, within ABZR87_RS17810at 355.928 kb on - strand, within ABZR87_RS17810at 355.928 kb on - strand, within ABZR87_RS17810at 356.345 kb on + strand, within ABZR87_RS17815at 356.346 kb on - strand, within ABZR87_RS17815at 356.379 kb on - strand, within ABZR87_RS17815at 356.539 kb on + strand, within ABZR87_RS17815at 356.539 kb on + strand, within ABZR87_RS17815at 356.540 kb on - strand, within ABZR87_RS17815at 356.579 kb on + strand, within ABZR87_RS17815at 356.580 kb on - strand, within ABZR87_RS17815at 356.636 kb on + strand, within ABZR87_RS17815at 356.636 kb on + strand, within ABZR87_RS17815at 356.637 kb on - strand, within ABZR87_RS17815at 356.637 kb on - strand, within ABZR87_RS17815at 356.732 kb on + strand, within ABZR87_RS17815at 356.732 kb on + strand, within ABZR87_RS17815at 356.747 kb on + strand, within ABZR87_RS17815at 356.747 kb on + strand, within ABZR87_RS17815at 356.768 kb on - strand, within ABZR87_RS17815at 357.030 kb on + strand, within ABZR87_RS17815at 357.030 kb on + strand, within ABZR87_RS17815at 357.030 kb on + strand, within ABZR87_RS17815at 357.030 kb on + strand, within ABZR87_RS17815at 357.031 kb on - strand, within ABZR87_RS17815at 357.031 kb on - strand, within ABZR87_RS17815at 357.031 kb on - strand, within ABZR87_RS17815at 357.031 kb on - strand, within ABZR87_RS17815at 357.031 kb on - strand, within ABZR87_RS17815at 357.031 kb on - strand, within ABZR87_RS17815at 357.031 kb on - strand, within ABZR87_RS17815at 357.032 kb on + strand, within ABZR87_RS17815at 357.032 kb on + strand, within ABZR87_RS17815at 357.032 kb on + strand, within ABZR87_RS17815at 357.033 kb on - strand, within ABZR87_RS17815at 357.033 kb on - strand, within ABZR87_RS17815at 357.033 kb on - strand, within ABZR87_RS17815at 357.034 kb on + strand, within ABZR87_RS17815at 357.034 kb on + strand, within ABZR87_RS17815at 357.035 kb on - strand, within ABZR87_RS17815at 357.261 kb on + strandat 357.262 kb on - strandat 357.262 kb on - strandat 357.640 kb on + strand, within ABZR87_RS17820at 357.640 kb on + strand, within ABZR87_RS17820at 357.673 kb on + strand, within ABZR87_RS17820at 357.674 kb on - strand, within ABZR87_RS17820at 357.674 kb on - strand, within ABZR87_RS17820at 357.674 kb on - strand, within ABZR87_RS17820at 357.674 kb on - strand, within ABZR87_RS17820at 357.696 kb on - strand, within ABZR87_RS17820at 357.769 kb on + strand, within ABZR87_RS17820at 357.769 kb on + strand, within ABZR87_RS17820at 357.770 kb on - strand, within ABZR87_RS17820at 357.770 kb on - strand, within ABZR87_RS17820at 357.770 kb on - strand, within ABZR87_RS17820at 357.803 kb on + strandat 357.804 kb on - strandat 358.053 kb on + strand, within ABZR87_RS17825at 358.150 kb on + strand, within ABZR87_RS17825

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB
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355,081 + +0.7
355,113 + -0.2
355,114 - +0.5
355,114 - +0.7
355,114 - -0.1
355,114 - -1.0
355,148 + ABZR87_RS17810 0.13 -0.2
355,148 + ABZR87_RS17810 0.13 +0.3
355,149 - ABZR87_RS17810 0.13 +0.4
355,149 - ABZR87_RS17810 0.13 +0.3
355,150 + ABZR87_RS17810 0.13 -0.8
355,151 - ABZR87_RS17810 0.13 -0.1
355,151 - ABZR87_RS17810 0.13 +0.3
355,151 - ABZR87_RS17810 0.13 -0.8
355,202 - ABZR87_RS17810 0.18 -0.5
355,297 + ABZR87_RS17810 0.27 -0.5
355,297 + ABZR87_RS17810 0.27 -0.1
355,298 - ABZR87_RS17810 0.27 +1.5
355,298 - ABZR87_RS17810 0.27 +0.2
355,376 - ABZR87_RS17810 0.34 +0.6
355,552 + ABZR87_RS17810 0.50 +0.7
355,552 + ABZR87_RS17810 0.50 +0.9
355,552 + ABZR87_RS17810 0.50 +0.9
355,553 - ABZR87_RS17810 0.50 +0.3
355,553 - ABZR87_RS17810 0.50 -1.1
355,553 - ABZR87_RS17810 0.50 -0.6
355,567 + ABZR87_RS17810 0.51 +1.1
355,567 + ABZR87_RS17810 0.51 -1.0
355,567 + ABZR87_RS17810 0.51 +1.4
355,567 + ABZR87_RS17810 0.51 -0.1
355,568 - ABZR87_RS17810 0.52 +0.4
355,568 - ABZR87_RS17810 0.52 -0.1
355,568 - ABZR87_RS17810 0.52 -0.5
355,568 - ABZR87_RS17810 0.52 +0.4
355,684 + ABZR87_RS17810 0.62 -0.6
355,684 + ABZR87_RS17810 0.62 -0.5
355,685 - ABZR87_RS17810 0.62 +0.9
355,685 - ABZR87_RS17810 0.62 +0.0
355,714 + ABZR87_RS17810 0.65 +1.2
355,714 + ABZR87_RS17810 0.65 -0.4
355,715 - ABZR87_RS17810 0.65 +0.3
355,739 - ABZR87_RS17810 0.67 +0.5
355,879 + ABZR87_RS17810 0.80 +0.2
355,879 + ABZR87_RS17810 0.80 -0.3
355,928 - ABZR87_RS17810 0.85 +1.1
355,928 - ABZR87_RS17810 0.85 +0.5
355,928 - ABZR87_RS17810 0.85 +0.8
356,345 + ABZR87_RS17815 0.23 -0.7
356,346 - ABZR87_RS17815 0.23 +0.5
356,379 - ABZR87_RS17815 0.26 +1.2
356,539 + ABZR87_RS17815 0.40 +0.7
356,539 + ABZR87_RS17815 0.40 -0.4
356,540 - ABZR87_RS17815 0.41 +1.4
356,579 + ABZR87_RS17815 0.44 -0.3
356,580 - ABZR87_RS17815 0.44 +0.6
356,636 + ABZR87_RS17815 0.49 +0.3
356,636 + ABZR87_RS17815 0.49 +0.3
356,637 - ABZR87_RS17815 0.49 +0.4
356,637 - ABZR87_RS17815 0.49 -0.6
356,732 + ABZR87_RS17815 0.57 -0.0
356,732 + ABZR87_RS17815 0.57 -0.4
356,747 + ABZR87_RS17815 0.59 +0.4
356,747 + ABZR87_RS17815 0.59 +0.5
356,768 - ABZR87_RS17815 0.61 +0.6
357,030 + ABZR87_RS17815 0.84 -0.3
357,030 + ABZR87_RS17815 0.84 -2.1
357,030 + ABZR87_RS17815 0.84 +0.3
357,030 + ABZR87_RS17815 0.84 +0.1
357,031 - ABZR87_RS17815 0.84 -0.1
357,031 - ABZR87_RS17815 0.84 +0.1
357,031 - ABZR87_RS17815 0.84 +0.9
357,031 - ABZR87_RS17815 0.84 +1.0
357,031 - ABZR87_RS17815 0.84 -0.9
357,031 - ABZR87_RS17815 0.84 +0.3
357,031 - ABZR87_RS17815 0.84 +0.1
357,032 + ABZR87_RS17815 0.84 +0.6
357,032 + ABZR87_RS17815 0.84 -0.1
357,032 + ABZR87_RS17815 0.84 +0.5
357,033 - ABZR87_RS17815 0.84 +0.1
357,033 - ABZR87_RS17815 0.84 +0.9
357,033 - ABZR87_RS17815 0.84 -1.3
357,034 + ABZR87_RS17815 0.84 -1.5
357,034 + ABZR87_RS17815 0.84 +0.3
357,035 - ABZR87_RS17815 0.84 -0.0
357,261 + +0.4
357,262 - -0.0
357,262 - +0.1
357,640 + ABZR87_RS17820 0.69 +0.7
357,640 + ABZR87_RS17820 0.69 -0.3
357,673 + ABZR87_RS17820 0.74 -1.7
357,674 - ABZR87_RS17820 0.74 -0.8
357,674 - ABZR87_RS17820 0.74 +1.6
357,674 - ABZR87_RS17820 0.74 -0.2
357,674 - ABZR87_RS17820 0.74 -1.1
357,696 - ABZR87_RS17820 0.78 -0.8
357,769 + ABZR87_RS17820 0.90 -0.1
357,769 + ABZR87_RS17820 0.90 -0.2
357,770 - ABZR87_RS17820 0.90 -0.1
357,770 - ABZR87_RS17820 0.90 -0.4
357,770 - ABZR87_RS17820 0.90 +1.0
357,803 + +0.2
357,804 - -0.1
358,053 + ABZR87_RS17825 0.17 -0.4
358,150 + ABZR87_RS17825 0.24 +0.0

Or see this region's nucleotide sequence