Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17450

Experiment: no_plant_soil sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17445 and ABZR87_RS17450 are separated by 8 nucleotidesABZR87_RS17450 and ABZR87_RS17455 overlap by 25 nucleotides ABZR87_RS17445: ABZR87_RS17445 - molybdopterin cofactor-binding domain-containing protein, at 271,752 to 273,956 _RS17445 ABZR87_RS17450: ABZR87_RS17450 - LysR family transcriptional regulator, at 273,965 to 274,894 _RS17450 ABZR87_RS17455: ABZR87_RS17455 - AraC family transcriptional regulator, at 274,870 to 275,886 _RS17455 Position (kb) 273 274 275Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 273.003 kb on + strand, within ABZR87_RS17445at 273.024 kb on + strand, within ABZR87_RS17445at 273.024 kb on + strand, within ABZR87_RS17445at 273.024 kb on + strand, within ABZR87_RS17445at 273.024 kb on + strand, within ABZR87_RS17445at 273.025 kb on - strand, within ABZR87_RS17445at 273.111 kb on + strand, within ABZR87_RS17445at 273.111 kb on + strand, within ABZR87_RS17445at 273.112 kb on - strand, within ABZR87_RS17445at 273.112 kb on - strand, within ABZR87_RS17445at 273.112 kb on - strand, within ABZR87_RS17445at 273.237 kb on + strand, within ABZR87_RS17445at 273.237 kb on + strand, within ABZR87_RS17445at 273.290 kb on + strand, within ABZR87_RS17445at 273.290 kb on + strand, within ABZR87_RS17445at 273.290 kb on + strand, within ABZR87_RS17445at 273.290 kb on + strand, within ABZR87_RS17445at 273.290 kb on + strand, within ABZR87_RS17445at 273.290 kb on + strand, within ABZR87_RS17445at 273.291 kb on - strand, within ABZR87_RS17445at 273.291 kb on - strand, within ABZR87_RS17445at 273.356 kb on + strand, within ABZR87_RS17445at 273.357 kb on - strand, within ABZR87_RS17445at 273.561 kb on + strand, within ABZR87_RS17445at 273.561 kb on + strand, within ABZR87_RS17445at 273.562 kb on - strand, within ABZR87_RS17445at 273.678 kb on + strand, within ABZR87_RS17445at 273.679 kb on - strand, within ABZR87_RS17445at 273.955 kb on - strandat 273.961 kb on + strandat 273.961 kb on + strandat 273.962 kb on - strandat 273.987 kb on - strandat 274.042 kb on + strandat 274.043 kb on - strandat 274.129 kb on - strand, within ABZR87_RS17450at 274.587 kb on + strand, within ABZR87_RS17450at 274.587 kb on + strand, within ABZR87_RS17450at 274.587 kb on + strand, within ABZR87_RS17450at 274.588 kb on - strand, within ABZR87_RS17450at 274.588 kb on - strand, within ABZR87_RS17450at 274.588 kb on - strand, within ABZR87_RS17450at 274.588 kb on - strand, within ABZR87_RS17450at 274.588 kb on - strand, within ABZR87_RS17450at 274.588 kb on - strand, within ABZR87_RS17450at 274.766 kb on + strand, within ABZR87_RS17450at 274.767 kb on - strand, within ABZR87_RS17450at 274.767 kb on - strand, within ABZR87_RS17450at 275.051 kb on + strand, within ABZR87_RS17455at 275.051 kb on + strand, within ABZR87_RS17455at 275.051 kb on + strand, within ABZR87_RS17455at 275.051 kb on + strand, within ABZR87_RS17455at 275.051 kb on + strand, within ABZR87_RS17455at 275.051 kb on + strand, within ABZR87_RS17455at 275.109 kb on + strand, within ABZR87_RS17455at 275.201 kb on + strand, within ABZR87_RS17455at 275.398 kb on - strand, within ABZR87_RS17455at 275.438 kb on + strand, within ABZR87_RS17455at 275.439 kb on - strand, within ABZR87_RS17455at 275.439 kb on - strand, within ABZR87_RS17455at 275.727 kb on - strand, within ABZR87_RS17455

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB
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273,003 + ABZR87_RS17445 0.57 -0.3
273,024 + ABZR87_RS17445 0.58 +0.5
273,024 + ABZR87_RS17445 0.58 -0.4
273,024 + ABZR87_RS17445 0.58 +0.6
273,024 + ABZR87_RS17445 0.58 -2.1
273,025 - ABZR87_RS17445 0.58 -0.5
273,111 + ABZR87_RS17445 0.62 -0.0
273,111 + ABZR87_RS17445 0.62 +2.4
273,112 - ABZR87_RS17445 0.62 +0.5
273,112 - ABZR87_RS17445 0.62 -0.5
273,112 - ABZR87_RS17445 0.62 +0.2
273,237 + ABZR87_RS17445 0.67 +1.7
273,237 + ABZR87_RS17445 0.67 +0.3
273,290 + ABZR87_RS17445 0.70 -0.3
273,290 + ABZR87_RS17445 0.70 +0.6
273,290 + ABZR87_RS17445 0.70 -0.5
273,290 + ABZR87_RS17445 0.70 -0.9
273,290 + ABZR87_RS17445 0.70 -0.2
273,290 + ABZR87_RS17445 0.70 +0.8
273,291 - ABZR87_RS17445 0.70 -0.3
273,291 - ABZR87_RS17445 0.70 -0.4
273,356 + ABZR87_RS17445 0.73 +0.0
273,357 - ABZR87_RS17445 0.73 +2.0
273,561 + ABZR87_RS17445 0.82 +1.1
273,561 + ABZR87_RS17445 0.82 +0.8
273,562 - ABZR87_RS17445 0.82 +0.1
273,678 + ABZR87_RS17445 0.87 +0.9
273,679 - ABZR87_RS17445 0.87 +0.1
273,955 - -0.3
273,961 + -0.1
273,961 + +3.2
273,962 - -0.5
273,987 - +1.0
274,042 + -0.2
274,043 - +0.0
274,129 - ABZR87_RS17450 0.18 -1.5
274,587 + ABZR87_RS17450 0.67 +1.5
274,587 + ABZR87_RS17450 0.67 +0.2
274,587 + ABZR87_RS17450 0.67 +0.3
274,588 - ABZR87_RS17450 0.67 +0.2
274,588 - ABZR87_RS17450 0.67 -0.7
274,588 - ABZR87_RS17450 0.67 +0.2
274,588 - ABZR87_RS17450 0.67 +0.5
274,588 - ABZR87_RS17450 0.67 -0.3
274,588 - ABZR87_RS17450 0.67 +0.4
274,766 + ABZR87_RS17450 0.86 +0.2
274,767 - ABZR87_RS17450 0.86 +0.6
274,767 - ABZR87_RS17450 0.86 -0.1
275,051 + ABZR87_RS17455 0.18 -0.8
275,051 + ABZR87_RS17455 0.18 -3.0
275,051 + ABZR87_RS17455 0.18 -0.2
275,051 + ABZR87_RS17455 0.18 -1.2
275,051 + ABZR87_RS17455 0.18 +0.7
275,051 + ABZR87_RS17455 0.18 +1.1
275,109 + ABZR87_RS17455 0.24 -1.6
275,201 + ABZR87_RS17455 0.33 -0.3
275,398 - ABZR87_RS17455 0.52 -1.1
275,438 + ABZR87_RS17455 0.56 -0.8
275,439 - ABZR87_RS17455 0.56 -1.5
275,439 - ABZR87_RS17455 0.56 -1.4
275,727 - ABZR87_RS17455 0.84 -1.7

Or see this region's nucleotide sequence