Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17385

Experiment: no_plant_soil sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17380 and ABZR87_RS17385 are separated by 53 nucleotidesABZR87_RS17385 and ABZR87_RS17390 are separated by 646 nucleotides ABZR87_RS17380: ABZR87_RS17380 - cyanophycin synthetase, at 255,086 to 257,746 _RS17380 ABZR87_RS17385: ABZR87_RS17385 - cyanophycin synthetase, at 257,800 to 260,367 _RS17385 ABZR87_RS17390: ABZR87_RS17390 - flavin reductase family protein, at 261,014 to 261,595 _RS17390 Position (kb) 257 258 259 260 261Strain fitness (log2 ratio) -2 -1 0 1 2at 256.800 kb on - strand, within ABZR87_RS17380at 256.862 kb on + strand, within ABZR87_RS17380at 256.863 kb on - strand, within ABZR87_RS17380at 256.863 kb on - strand, within ABZR87_RS17380at 256.886 kb on + strand, within ABZR87_RS17380at 256.886 kb on + strand, within ABZR87_RS17380at 256.886 kb on + strand, within ABZR87_RS17380at 256.886 kb on + strand, within ABZR87_RS17380at 256.886 kb on + strand, within ABZR87_RS17380at 256.886 kb on + strand, within ABZR87_RS17380at 256.886 kb on + strand, within ABZR87_RS17380at 256.887 kb on - strand, within ABZR87_RS17380at 256.887 kb on - strand, within ABZR87_RS17380at 256.887 kb on - strand, within ABZR87_RS17380at 256.887 kb on - strand, within ABZR87_RS17380at 256.887 kb on - strand, within ABZR87_RS17380at 256.887 kb on - strand, within ABZR87_RS17380at 256.888 kb on + strand, within ABZR87_RS17380at 256.889 kb on - strand, within ABZR87_RS17380at 256.889 kb on - strand, within ABZR87_RS17380at 257.032 kb on + strand, within ABZR87_RS17380at 257.032 kb on + strand, within ABZR87_RS17380at 257.147 kb on + strand, within ABZR87_RS17380at 257.147 kb on + strand, within ABZR87_RS17380at 257.147 kb on + strand, within ABZR87_RS17380at 257.403 kb on + strand, within ABZR87_RS17380at 257.403 kb on + strand, within ABZR87_RS17380at 257.403 kb on + strand, within ABZR87_RS17380at 257.404 kb on - strand, within ABZR87_RS17380at 257.404 kb on - strand, within ABZR87_RS17380at 257.487 kb on + strandat 257.710 kb on - strandat 257.710 kb on - strandat 257.795 kb on - strandat 257.854 kb on - strandat 258.091 kb on + strand, within ABZR87_RS17385at 258.091 kb on + strand, within ABZR87_RS17385at 258.092 kb on - strand, within ABZR87_RS17385at 258.109 kb on + strand, within ABZR87_RS17385at 258.109 kb on + strand, within ABZR87_RS17385at 258.109 kb on + strand, within ABZR87_RS17385at 258.110 kb on - strand, within ABZR87_RS17385at 258.604 kb on + strand, within ABZR87_RS17385at 258.605 kb on - strand, within ABZR87_RS17385at 258.605 kb on - strand, within ABZR87_RS17385at 258.605 kb on - strand, within ABZR87_RS17385at 258.605 kb on - strand, within ABZR87_RS17385at 258.605 kb on - strand, within ABZR87_RS17385at 258.649 kb on + strand, within ABZR87_RS17385at 258.649 kb on + strand, within ABZR87_RS17385at 258.649 kb on + strand, within ABZR87_RS17385at 258.650 kb on - strand, within ABZR87_RS17385at 258.773 kb on + strand, within ABZR87_RS17385at 258.774 kb on - strand, within ABZR87_RS17385at 258.774 kb on - strand, within ABZR87_RS17385at 258.774 kb on - strand, within ABZR87_RS17385at 258.774 kb on - strand, within ABZR87_RS17385at 259.321 kb on + strand, within ABZR87_RS17385at 259.321 kb on + strand, within ABZR87_RS17385at 259.321 kb on + strand, within ABZR87_RS17385at 259.321 kb on + strand, within ABZR87_RS17385at 259.321 kb on + strand, within ABZR87_RS17385at 259.321 kb on + strand, within ABZR87_RS17385at 259.322 kb on - strand, within ABZR87_RS17385at 259.322 kb on - strand, within ABZR87_RS17385at 259.322 kb on - strand, within ABZR87_RS17385at 259.322 kb on - strand, within ABZR87_RS17385at 259.322 kb on - strand, within ABZR87_RS17385at 259.400 kb on + strand, within ABZR87_RS17385at 259.400 kb on + strand, within ABZR87_RS17385at 259.519 kb on + strand, within ABZR87_RS17385at 259.519 kb on + strand, within ABZR87_RS17385at 259.519 kb on + strand, within ABZR87_RS17385at 259.520 kb on - strand, within ABZR87_RS17385at 259.520 kb on - strand, within ABZR87_RS17385at 259.520 kb on - strand, within ABZR87_RS17385at 259.520 kb on - strand, within ABZR87_RS17385at 259.520 kb on - strand, within ABZR87_RS17385at 259.955 kb on - strand, within ABZR87_RS17385at 259.981 kb on + strand, within ABZR87_RS17385at 260.091 kb on + strand, within ABZR87_RS17385at 260.143 kb on + strandat 260.143 kb on + strandat 260.143 kb on + strandat 260.144 kb on - strandat 260.144 kb on - strandat 260.144 kb on - strandat 260.343 kb on + strandat 260.343 kb on + strandat 260.343 kb on + strandat 260.343 kb on + strandat 260.721 kb on - strandat 260.721 kb on - strandat 260.979 kb on + strandat 260.980 kb on - strandat 260.980 kb on - strandat 260.980 kb on - strandat 261.042 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB
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256,800 - ABZR87_RS17380 0.64 -1.5
256,862 + ABZR87_RS17380 0.67 -0.5
256,863 - ABZR87_RS17380 0.67 -1.3
256,863 - ABZR87_RS17380 0.67 +0.6
256,886 + ABZR87_RS17380 0.68 +0.3
256,886 + ABZR87_RS17380 0.68 -1.3
256,886 + ABZR87_RS17380 0.68 -0.0
256,886 + ABZR87_RS17380 0.68 -0.8
256,886 + ABZR87_RS17380 0.68 +0.5
256,886 + ABZR87_RS17380 0.68 +0.7
256,886 + ABZR87_RS17380 0.68 -0.0
256,887 - ABZR87_RS17380 0.68 +1.4
256,887 - ABZR87_RS17380 0.68 -0.3
256,887 - ABZR87_RS17380 0.68 +0.2
256,887 - ABZR87_RS17380 0.68 -1.6
256,887 - ABZR87_RS17380 0.68 +0.6
256,887 - ABZR87_RS17380 0.68 -0.8
256,888 + ABZR87_RS17380 0.68 +1.0
256,889 - ABZR87_RS17380 0.68 -0.1
256,889 - ABZR87_RS17380 0.68 -0.9
257,032 + ABZR87_RS17380 0.73 -0.5
257,032 + ABZR87_RS17380 0.73 +0.1
257,147 + ABZR87_RS17380 0.77 -0.3
257,147 + ABZR87_RS17380 0.77 -0.8
257,147 + ABZR87_RS17380 0.77 +0.5
257,403 + ABZR87_RS17380 0.87 +0.6
257,403 + ABZR87_RS17380 0.87 +0.4
257,403 + ABZR87_RS17380 0.87 +0.2
257,404 - ABZR87_RS17380 0.87 +0.1
257,404 - ABZR87_RS17380 0.87 -1.2
257,487 + +1.0
257,710 - +1.0
257,710 - -0.5
257,795 - +0.2
257,854 - -0.0
258,091 + ABZR87_RS17385 0.11 +1.3
258,091 + ABZR87_RS17385 0.11 +1.3
258,092 - ABZR87_RS17385 0.11 +0.5
258,109 + ABZR87_RS17385 0.12 -0.4
258,109 + ABZR87_RS17385 0.12 -0.9
258,109 + ABZR87_RS17385 0.12 +0.7
258,110 - ABZR87_RS17385 0.12 -0.5
258,604 + ABZR87_RS17385 0.31 -0.3
258,605 - ABZR87_RS17385 0.31 +0.2
258,605 - ABZR87_RS17385 0.31 +1.4
258,605 - ABZR87_RS17385 0.31 -1.1
258,605 - ABZR87_RS17385 0.31 -0.6
258,605 - ABZR87_RS17385 0.31 -0.6
258,649 + ABZR87_RS17385 0.33 +0.3
258,649 + ABZR87_RS17385 0.33 -0.2
258,649 + ABZR87_RS17385 0.33 +2.5
258,650 - ABZR87_RS17385 0.33 +0.4
258,773 + ABZR87_RS17385 0.38 +0.9
258,774 - ABZR87_RS17385 0.38 -0.7
258,774 - ABZR87_RS17385 0.38 +1.6
258,774 - ABZR87_RS17385 0.38 -0.1
258,774 - ABZR87_RS17385 0.38 +1.2
259,321 + ABZR87_RS17385 0.59 +1.2
259,321 + ABZR87_RS17385 0.59 +0.1
259,321 + ABZR87_RS17385 0.59 -0.1
259,321 + ABZR87_RS17385 0.59 -2.6
259,321 + ABZR87_RS17385 0.59 +1.0
259,321 + ABZR87_RS17385 0.59 +0.2
259,322 - ABZR87_RS17385 0.59 -2.4
259,322 - ABZR87_RS17385 0.59 +0.8
259,322 - ABZR87_RS17385 0.59 -0.7
259,322 - ABZR87_RS17385 0.59 +0.4
259,322 - ABZR87_RS17385 0.59 -0.5
259,400 + ABZR87_RS17385 0.62 +0.1
259,400 + ABZR87_RS17385 0.62 -1.4
259,519 + ABZR87_RS17385 0.67 -1.2
259,519 + ABZR87_RS17385 0.67 +0.9
259,519 + ABZR87_RS17385 0.67 +1.4
259,520 - ABZR87_RS17385 0.67 -2.0
259,520 - ABZR87_RS17385 0.67 +0.4
259,520 - ABZR87_RS17385 0.67 +1.0
259,520 - ABZR87_RS17385 0.67 +0.6
259,520 - ABZR87_RS17385 0.67 +1.4
259,955 - ABZR87_RS17385 0.84 -0.2
259,981 + ABZR87_RS17385 0.85 +0.4
260,091 + ABZR87_RS17385 0.89 +0.5
260,143 + -0.2
260,143 + +0.2
260,143 + -0.3
260,144 - +0.1
260,144 - -1.0
260,144 - +0.0
260,343 + -0.4
260,343 + +0.3
260,343 + -1.0
260,343 + -0.0
260,721 - +0.1
260,721 - -1.0
260,979 + -0.5
260,980 - +0.4
260,980 - -1.1
260,980 - +0.8
261,042 + -0.5

Or see this region's nucleotide sequence