Experiment: no_plant_soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17300 and ABZR87_RS17305 are separated by 13 nucleotides ABZR87_RS17305 and ABZR87_RS17310 are separated by 90 nucleotides ABZR87_RS17310 and ABZR87_RS17315 are separated by 116 nucleotides ABZR87_RS17315 and ABZR87_RS17320 are separated by 76 nucleotides
ABZR87_RS17300: ABZR87_RS17300 - hypothetical protein, at 240,283 to 240,534
_RS17300
ABZR87_RS17305: ABZR87_RS17305 - siderophore-interacting protein, at 240,548 to 241,369
_RS17305
ABZR87_RS17310: ABZR87_RS17310 - PadR family transcriptional regulator, at 241,460 to 242,128
_RS17310
ABZR87_RS17315: ABZR87_RS17315 - MarR family transcriptional regulator, at 242,245 to 242,763
_RS17315
ABZR87_RS17320: ABZR87_RS17320 - carboxymuconolactone decarboxylase family protein, at 242,840 to 243,337
_RS17320
Position (kb) 241
242
243 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 240.601 kb on - strand at 240.601 kb on - strand at 240.861 kb on + strand, within ABZR87_RS17305 at 240.861 kb on + strand, within ABZR87_RS17305 at 240.861 kb on + strand, within ABZR87_RS17305 at 240.861 kb on + strand, within ABZR87_RS17305 at 240.861 kb on + strand, within ABZR87_RS17305 at 240.862 kb on - strand, within ABZR87_RS17305 at 240.862 kb on - strand, within ABZR87_RS17305 at 240.862 kb on - strand, within ABZR87_RS17305 at 240.862 kb on - strand, within ABZR87_RS17305 at 241.128 kb on + strand, within ABZR87_RS17305 at 241.128 kb on + strand, within ABZR87_RS17305 at 241.128 kb on + strand, within ABZR87_RS17305 at 241.128 kb on + strand, within ABZR87_RS17305 at 241.129 kb on - strand, within ABZR87_RS17305 at 241.129 kb on - strand, within ABZR87_RS17305 at 241.129 kb on - strand, within ABZR87_RS17305 at 241.129 kb on - strand, within ABZR87_RS17305 at 241.129 kb on - strand, within ABZR87_RS17305 at 241.244 kb on - strand, within ABZR87_RS17305 at 241.244 kb on - strand, within ABZR87_RS17305 at 241.276 kb on + strand, within ABZR87_RS17305 at 241.276 kb on + strand, within ABZR87_RS17305 at 241.276 kb on + strand, within ABZR87_RS17305 at 241.276 kb on + strand, within ABZR87_RS17305 at 241.276 kb on + strand, within ABZR87_RS17305 at 241.276 kb on + strand, within ABZR87_RS17305 at 241.277 kb on - strand, within ABZR87_RS17305 at 241.277 kb on - strand, within ABZR87_RS17305 at 241.277 kb on - strand, within ABZR87_RS17305 at 241.277 kb on - strand, within ABZR87_RS17305 at 241.277 kb on - strand, within ABZR87_RS17305 at 241.277 kb on - strand, within ABZR87_RS17305 at 241.277 kb on - strand, within ABZR87_RS17305 at 241.369 kb on + strand at 241.369 kb on + strand at 241.369 kb on + strand at 241.369 kb on + strand at 241.369 kb on + strand at 241.369 kb on + strand at 241.369 kb on + strand at 241.369 kb on + strand at 241.369 kb on + strand at 241.370 kb on - strand at 241.370 kb on - strand at 241.370 kb on - strand at 241.370 kb on - strand at 241.370 kb on - strand at 241.461 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.758 kb on + strand, within ABZR87_RS17310 at 241.759 kb on - strand, within ABZR87_RS17310 at 241.812 kb on + strand, within ABZR87_RS17310 at 241.812 kb on + strand, within ABZR87_RS17310 at 241.813 kb on - strand, within ABZR87_RS17310 at 241.827 kb on + strand, within ABZR87_RS17310 at 241.851 kb on + strand, within ABZR87_RS17310 at 241.851 kb on + strand, within ABZR87_RS17310 at 241.852 kb on - strand, within ABZR87_RS17310 at 241.852 kb on - strand, within ABZR87_RS17310 at 241.852 kb on - strand, within ABZR87_RS17310 at 241.852 kb on - strand, within ABZR87_RS17310 at 241.893 kb on + strand, within ABZR87_RS17310 at 241.894 kb on - strand, within ABZR87_RS17310 at 242.158 kb on - strand at 242.158 kb on - strand at 242.159 kb on + strand at 242.165 kb on - strand at 242.284 kb on + strand at 242.284 kb on + strand at 242.285 kb on - strand at 242.285 kb on - strand at 242.299 kb on + strand, within ABZR87_RS17315 at 242.299 kb on + strand, within ABZR87_RS17315 at 242.299 kb on + strand, within ABZR87_RS17315 at 242.300 kb on - strand, within ABZR87_RS17315 at 242.452 kb on - strand, within ABZR87_RS17315 at 242.452 kb on - strand, within ABZR87_RS17315 at 242.654 kb on + strand, within ABZR87_RS17315 at 242.663 kb on + strand, within ABZR87_RS17315 at 242.663 kb on + strand, within ABZR87_RS17315 at 242.664 kb on - strand, within ABZR87_RS17315 at 242.664 kb on - strand, within ABZR87_RS17315 at 242.664 kb on - strand, within ABZR87_RS17315 at 242.664 kb on - strand, within ABZR87_RS17315 at 242.664 kb on - strand, within ABZR87_RS17315 at 242.867 kb on + strand at 242.868 kb on - strand at 242.868 kb on - strand at 242.884 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB remove 240,601 - -1.2 240,601 - -1.8 240,861 + ABZR87_RS17305 0.38 -1.2 240,861 + ABZR87_RS17305 0.38 -1.0 240,861 + ABZR87_RS17305 0.38 -0.8 240,861 + ABZR87_RS17305 0.38 +0.3 240,861 + ABZR87_RS17305 0.38 +1.3 240,862 - ABZR87_RS17305 0.38 +0.3 240,862 - ABZR87_RS17305 0.38 +0.8 240,862 - ABZR87_RS17305 0.38 +0.8 240,862 - ABZR87_RS17305 0.38 -1.4 241,128 + ABZR87_RS17305 0.71 -0.5 241,128 + ABZR87_RS17305 0.71 -0.3 241,128 + ABZR87_RS17305 0.71 +1.9 241,128 + ABZR87_RS17305 0.71 +0.8 241,129 - ABZR87_RS17305 0.71 +0.4 241,129 - ABZR87_RS17305 0.71 +0.7 241,129 - ABZR87_RS17305 0.71 +0.3 241,129 - ABZR87_RS17305 0.71 -0.4 241,129 - ABZR87_RS17305 0.71 -0.2 241,244 - ABZR87_RS17305 0.85 +0.3 241,244 - ABZR87_RS17305 0.85 -0.4 241,276 + ABZR87_RS17305 0.89 -1.0 241,276 + ABZR87_RS17305 0.89 +0.4 241,276 + ABZR87_RS17305 0.89 -1.3 241,276 + ABZR87_RS17305 0.89 -0.6 241,276 + ABZR87_RS17305 0.89 +0.5 241,276 + ABZR87_RS17305 0.89 -0.2 241,277 - ABZR87_RS17305 0.89 +0.3 241,277 - ABZR87_RS17305 0.89 +0.3 241,277 - ABZR87_RS17305 0.89 -1.1 241,277 - ABZR87_RS17305 0.89 -0.1 241,277 - ABZR87_RS17305 0.89 -0.5 241,277 - ABZR87_RS17305 0.89 -0.4 241,277 - ABZR87_RS17305 0.89 -0.4 241,369 + -0.5 241,369 + -0.0 241,369 + +0.6 241,369 + +0.2 241,369 + +0.5 241,369 + +0.0 241,369 + -1.0 241,369 + +1.0 241,369 + -1.4 241,370 - -2.7 241,370 - -0.3 241,370 - +0.4 241,370 - +0.1 241,370 - -0.1 241,461 + +0.8 241,493 + -1.8 241,493 + -1.2 241,494 - -4.1 241,494 - -4.2 241,494 - -3.2 241,758 + ABZR87_RS17310 0.45 -1.5 241,759 - ABZR87_RS17310 0.45 -0.1 241,812 + ABZR87_RS17310 0.53 -4.5 241,812 + ABZR87_RS17310 0.53 -1.9 241,813 - ABZR87_RS17310 0.53 -2.8 241,827 + ABZR87_RS17310 0.55 -2.8 241,851 + ABZR87_RS17310 0.58 -2.5 241,851 + ABZR87_RS17310 0.58 -1.9 241,852 - ABZR87_RS17310 0.59 -3.5 241,852 - ABZR87_RS17310 0.59 -3.3 241,852 - ABZR87_RS17310 0.59 -3.4 241,852 - ABZR87_RS17310 0.59 -4.1 241,893 + ABZR87_RS17310 0.65 -3.3 241,894 - ABZR87_RS17310 0.65 -2.8 242,158 - -0.4 242,158 - +0.1 242,159 + +0.2 242,165 - -1.0 242,284 + -1.8 242,284 + +0.1 242,285 - -1.1 242,285 - -1.4 242,299 + ABZR87_RS17315 0.10 -2.2 242,299 + ABZR87_RS17315 0.10 -2.4 242,299 + ABZR87_RS17315 0.10 +0.2 242,300 - ABZR87_RS17315 0.11 +0.0 242,452 - ABZR87_RS17315 0.40 -0.9 242,452 - ABZR87_RS17315 0.40 -1.4 242,654 + ABZR87_RS17315 0.79 -1.6 242,663 + ABZR87_RS17315 0.81 +0.2 242,663 + ABZR87_RS17315 0.81 +1.3 242,664 - ABZR87_RS17315 0.81 -0.4 242,664 - ABZR87_RS17315 0.81 -0.8 242,664 - ABZR87_RS17315 0.81 +0.4 242,664 - ABZR87_RS17315 0.81 -0.9 242,664 - ABZR87_RS17315 0.81 -0.5 242,867 + +0.2 242,868 - -1.5 242,868 - -0.6 242,884 + -0.2
Or see this region's nucleotide sequence