Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17255

Experiment: no_plant_soil sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17245 and ABZR87_RS17250 are separated by 95 nucleotidesABZR87_RS17250 and ABZR87_RS17255 overlap by 22 nucleotidesABZR87_RS17255 and ABZR87_RS17260 are separated by 451 nucleotides ABZR87_RS17245: ABZR87_RS17245 - LysR substrate-binding domain-containing protein, at 227,337 to 228,224 _RS17245 ABZR87_RS17250: ABZR87_RS17250 - nucleoside deaminase, at 228,320 to 228,775 _RS17250 ABZR87_RS17255: ABZR87_RS17255 - CynX/NimT family MFS transporter, at 228,754 to 230,007 _RS17255 ABZR87_RS17260: ABZR87_RS17260 - ferric iron uptake transcriptional regulator, at 230,459 to 230,914 _RS17260 Position (kb) 228 229 230 231Strain fitness (log2 ratio) -2 -1 0 1 2at 227.821 kb on + strand, within ABZR87_RS17245at 227.821 kb on + strand, within ABZR87_RS17245at 228.285 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.336 kb on - strandat 228.336 kb on - strandat 228.336 kb on - strandat 228.336 kb on - strandat 228.336 kb on - strandat 228.517 kb on + strand, within ABZR87_RS17250at 228.545 kb on + strand, within ABZR87_RS17250at 228.545 kb on + strand, within ABZR87_RS17250at 228.545 kb on + strand, within ABZR87_RS17250at 228.545 kb on + strand, within ABZR87_RS17250at 228.545 kb on + strand, within ABZR87_RS17250at 228.546 kb on - strand, within ABZR87_RS17250at 228.546 kb on - strand, within ABZR87_RS17250at 228.546 kb on - strand, within ABZR87_RS17250at 228.546 kb on - strand, within ABZR87_RS17250at 228.611 kb on + strand, within ABZR87_RS17250at 228.611 kb on + strand, within ABZR87_RS17250at 228.611 kb on + strand, within ABZR87_RS17250at 228.612 kb on - strand, within ABZR87_RS17250at 228.620 kb on + strand, within ABZR87_RS17250at 228.623 kb on + strand, within ABZR87_RS17250at 228.668 kb on + strand, within ABZR87_RS17250at 228.668 kb on + strand, within ABZR87_RS17250at 228.668 kb on + strand, within ABZR87_RS17250at 228.668 kb on + strand, within ABZR87_RS17250at 228.669 kb on - strand, within ABZR87_RS17250at 228.746 kb on + strandat 228.747 kb on - strandat 228.747 kb on - strandat 229.240 kb on + strand, within ABZR87_RS17255at 229.240 kb on + strand, within ABZR87_RS17255at 229.240 kb on + strand, within ABZR87_RS17255at 229.240 kb on + strand, within ABZR87_RS17255at 229.240 kb on + strand, within ABZR87_RS17255at 229.240 kb on + strand, within ABZR87_RS17255at 229.241 kb on - strand, within ABZR87_RS17255at 229.241 kb on - strand, within ABZR87_RS17255at 229.241 kb on - strand, within ABZR87_RS17255at 229.241 kb on - strand, within ABZR87_RS17255at 229.241 kb on - strand, within ABZR87_RS17255at 229.241 kb on - strand, within ABZR87_RS17255at 229.296 kb on + strand, within ABZR87_RS17255at 229.296 kb on + strand, within ABZR87_RS17255at 229.296 kb on + strand, within ABZR87_RS17255at 229.296 kb on + strand, within ABZR87_RS17255at 229.296 kb on + strand, within ABZR87_RS17255at 229.296 kb on + strand, within ABZR87_RS17255at 229.296 kb on + strand, within ABZR87_RS17255at 229.296 kb on + strand, within ABZR87_RS17255at 229.296 kb on + strand, within ABZR87_RS17255at 229.297 kb on - strand, within ABZR87_RS17255at 229.297 kb on - strand, within ABZR87_RS17255at 229.297 kb on - strand, within ABZR87_RS17255at 229.297 kb on - strand, within ABZR87_RS17255at 229.297 kb on - strand, within ABZR87_RS17255at 229.297 kb on - strand, within ABZR87_RS17255at 229.462 kb on + strand, within ABZR87_RS17255at 229.462 kb on + strand, within ABZR87_RS17255at 229.463 kb on - strand, within ABZR87_RS17255at 229.463 kb on - strand, within ABZR87_RS17255at 229.463 kb on - strand, within ABZR87_RS17255at 229.486 kb on + strand, within ABZR87_RS17255at 229.486 kb on + strand, within ABZR87_RS17255at 229.487 kb on - strand, within ABZR87_RS17255at 229.519 kb on + strand, within ABZR87_RS17255at 229.519 kb on + strand, within ABZR87_RS17255at 229.520 kb on - strand, within ABZR87_RS17255at 229.520 kb on - strand, within ABZR87_RS17255at 229.813 kb on + strand, within ABZR87_RS17255at 229.813 kb on + strand, within ABZR87_RS17255at 229.813 kb on + strand, within ABZR87_RS17255at 229.813 kb on + strand, within ABZR87_RS17255at 229.814 kb on - strand, within ABZR87_RS17255at 229.867 kb on + strand, within ABZR87_RS17255at 229.868 kb on - strand, within ABZR87_RS17255at 229.952 kb on + strandat 229.953 kb on - strandat 229.981 kb on + strandat 230.006 kb on - strandat 230.006 kb on - strandat 230.264 kb on + strandat 230.264 kb on + strandat 230.264 kb on + strandat 230.264 kb on + strandat 230.264 kb on + strandat 230.265 kb on - strandat 230.265 kb on - strandat 230.415 kb on + strandat 230.415 kb on + strandat 230.415 kb on + strandat 230.432 kb on + strandat 230.432 kb on + strandat 230.433 kb on - strandat 230.433 kb on - strandat 230.494 kb on + strandat 230.494 kb on + strandat 230.579 kb on + strand, within ABZR87_RS17260at 230.579 kb on + strand, within ABZR87_RS17260at 230.580 kb on - strand, within ABZR87_RS17260at 230.580 kb on - strand, within ABZR87_RS17260at 230.580 kb on - strand, within ABZR87_RS17260at 230.627 kb on + strand, within ABZR87_RS17260at 230.674 kb on + strand, within ABZR87_RS17260at 230.674 kb on + strand, within ABZR87_RS17260at 230.674 kb on + strand, within ABZR87_RS17260at 230.674 kb on + strand, within ABZR87_RS17260at 230.674 kb on + strand, within ABZR87_RS17260at 230.674 kb on + strand, within ABZR87_RS17260at 230.675 kb on - strand, within ABZR87_RS17260at 230.675 kb on - strand, within ABZR87_RS17260at 230.675 kb on - strand, within ABZR87_RS17260at 230.699 kb on + strand, within ABZR87_RS17260at 230.699 kb on + strand, within ABZR87_RS17260at 230.699 kb on + strand, within ABZR87_RS17260at 230.699 kb on + strand, within ABZR87_RS17260at 230.699 kb on + strand, within ABZR87_RS17260at 230.699 kb on + strand, within ABZR87_RS17260at 230.699 kb on + strand, within ABZR87_RS17260at 230.700 kb on - strand, within ABZR87_RS17260at 230.700 kb on - strand, within ABZR87_RS17260at 230.849 kb on + strand, within ABZR87_RS17260at 230.850 kb on - strand, within ABZR87_RS17260at 230.925 kb on + strandat 230.926 kb on - strandat 230.926 kb on - strandat 230.941 kb on + strandat 230.942 kb on - strandat 230.995 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB
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227,821 + ABZR87_RS17245 0.55 -0.6
227,821 + ABZR87_RS17245 0.55 -0.5
228,285 + -0.7
228,335 + -0.4
228,335 + +0.2
228,335 + -0.3
228,335 + -0.4
228,335 + +0.4
228,335 + +0.1
228,335 + +0.6
228,335 + +0.1
228,335 + -0.1
228,335 + -0.4
228,336 - -1.3
228,336 - -1.2
228,336 - -0.4
228,336 - -0.9
228,336 - -0.5
228,517 + ABZR87_RS17250 0.43 -0.7
228,545 + ABZR87_RS17250 0.49 -0.5
228,545 + ABZR87_RS17250 0.49 -0.4
228,545 + ABZR87_RS17250 0.49 +0.2
228,545 + ABZR87_RS17250 0.49 +0.1
228,545 + ABZR87_RS17250 0.49 +0.0
228,546 - ABZR87_RS17250 0.50 -2.2
228,546 - ABZR87_RS17250 0.50 -2.0
228,546 - ABZR87_RS17250 0.50 -0.8
228,546 - ABZR87_RS17250 0.50 +0.7
228,611 + ABZR87_RS17250 0.64 +0.5
228,611 + ABZR87_RS17250 0.64 +0.1
228,611 + ABZR87_RS17250 0.64 +0.2
228,612 - ABZR87_RS17250 0.64 -0.8
228,620 + ABZR87_RS17250 0.66 +0.7
228,623 + ABZR87_RS17250 0.66 -0.8
228,668 + ABZR87_RS17250 0.76 -1.1
228,668 + ABZR87_RS17250 0.76 -0.6
228,668 + ABZR87_RS17250 0.76 -0.3
228,668 + ABZR87_RS17250 0.76 -0.8
228,669 - ABZR87_RS17250 0.77 -1.1
228,746 + +0.0
228,747 - -0.4
228,747 - -0.9
229,240 + ABZR87_RS17255 0.39 -0.7
229,240 + ABZR87_RS17255 0.39 +0.7
229,240 + ABZR87_RS17255 0.39 +1.5
229,240 + ABZR87_RS17255 0.39 -0.3
229,240 + ABZR87_RS17255 0.39 +1.6
229,240 + ABZR87_RS17255 0.39 +0.6
229,241 - ABZR87_RS17255 0.39 -1.2
229,241 - ABZR87_RS17255 0.39 -1.6
229,241 - ABZR87_RS17255 0.39 -1.7
229,241 - ABZR87_RS17255 0.39 +0.3
229,241 - ABZR87_RS17255 0.39 +0.8
229,241 - ABZR87_RS17255 0.39 -0.4
229,296 + ABZR87_RS17255 0.43 +0.0
229,296 + ABZR87_RS17255 0.43 +0.6
229,296 + ABZR87_RS17255 0.43 -0.2
229,296 + ABZR87_RS17255 0.43 -0.5
229,296 + ABZR87_RS17255 0.43 -0.3
229,296 + ABZR87_RS17255 0.43 -1.9
229,296 + ABZR87_RS17255 0.43 -0.2
229,296 + ABZR87_RS17255 0.43 -0.2
229,296 + ABZR87_RS17255 0.43 -1.0
229,297 - ABZR87_RS17255 0.43 +0.2
229,297 - ABZR87_RS17255 0.43 -0.3
229,297 - ABZR87_RS17255 0.43 -0.1
229,297 - ABZR87_RS17255 0.43 -2.2
229,297 - ABZR87_RS17255 0.43 +1.8
229,297 - ABZR87_RS17255 0.43 -0.6
229,462 + ABZR87_RS17255 0.56 -0.1
229,462 + ABZR87_RS17255 0.56 +1.4
229,463 - ABZR87_RS17255 0.57 -0.3
229,463 - ABZR87_RS17255 0.57 -0.1
229,463 - ABZR87_RS17255 0.57 -1.1
229,486 + ABZR87_RS17255 0.58 +0.6
229,486 + ABZR87_RS17255 0.58 -0.4
229,487 - ABZR87_RS17255 0.58 +0.2
229,519 + ABZR87_RS17255 0.61 -1.7
229,519 + ABZR87_RS17255 0.61 +0.4
229,520 - ABZR87_RS17255 0.61 +0.4
229,520 - ABZR87_RS17255 0.61 +0.6
229,813 + ABZR87_RS17255 0.84 -0.3
229,813 + ABZR87_RS17255 0.84 -0.3
229,813 + ABZR87_RS17255 0.84 -0.2
229,813 + ABZR87_RS17255 0.84 -0.5
229,814 - ABZR87_RS17255 0.85 +0.2
229,867 + ABZR87_RS17255 0.89 -0.5
229,868 - ABZR87_RS17255 0.89 -1.1
229,952 + +0.9
229,953 - +0.0
229,981 + -0.3
230,006 - -0.3
230,006 - +0.6
230,264 + -2.0
230,264 + -0.2
230,264 + -0.2
230,264 + +1.0
230,264 + -1.0
230,265 - -0.3
230,265 - +1.5
230,415 + +0.7
230,415 + +0.0
230,415 + -0.2
230,432 + +0.9
230,432 + -0.5
230,433 - -0.3
230,433 - -1.1
230,494 + -2.0
230,494 + -0.4
230,579 + ABZR87_RS17260 0.26 -0.8
230,579 + ABZR87_RS17260 0.26 +0.0
230,580 - ABZR87_RS17260 0.27 +0.8
230,580 - ABZR87_RS17260 0.27 -0.2
230,580 - ABZR87_RS17260 0.27 +0.1
230,627 + ABZR87_RS17260 0.37 -0.6
230,674 + ABZR87_RS17260 0.47 -0.0
230,674 + ABZR87_RS17260 0.47 +0.3
230,674 + ABZR87_RS17260 0.47 -0.7
230,674 + ABZR87_RS17260 0.47 +0.3
230,674 + ABZR87_RS17260 0.47 +0.7
230,674 + ABZR87_RS17260 0.47 -0.4
230,675 - ABZR87_RS17260 0.47 -0.2
230,675 - ABZR87_RS17260 0.47 +0.3
230,675 - ABZR87_RS17260 0.47 +0.4
230,699 + ABZR87_RS17260 0.53 -0.1
230,699 + ABZR87_RS17260 0.53 -0.8
230,699 + ABZR87_RS17260 0.53 +0.4
230,699 + ABZR87_RS17260 0.53 +0.9
230,699 + ABZR87_RS17260 0.53 -0.6
230,699 + ABZR87_RS17260 0.53 -1.0
230,699 + ABZR87_RS17260 0.53 +0.3
230,700 - ABZR87_RS17260 0.53 -1.5
230,700 - ABZR87_RS17260 0.53 -0.1
230,849 + ABZR87_RS17260 0.86 +0.7
230,850 - ABZR87_RS17260 0.86 -0.7
230,925 + -0.1
230,926 - +0.1
230,926 - -0.3
230,941 + +0.2
230,942 - +0.5
230,995 + +0.8

Or see this region's nucleotide sequence