Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16740

Experiment: no_plant_soil sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16735 and ABZR87_RS16740 are separated by 276 nucleotidesABZR87_RS16740 and ABZR87_RS16745 are separated by 46 nucleotides ABZR87_RS16735: ABZR87_RS16735 - Fe/S-dependent 2-methylisocitrate dehydratase AcnD, at 103,035 to 105,632 _RS16735 ABZR87_RS16740: ABZR87_RS16740 - 2-methylcitrate synthase, at 105,909 to 107,078 _RS16740 ABZR87_RS16745: ABZR87_RS16745 - methylisocitrate lyase, at 107,125 to 108,021 _RS16745 Position (kb) 105 106 107 108Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 105.262 kb on - strand, within ABZR87_RS16735at 105.496 kb on - strandat 105.496 kb on - strandat 105.526 kb on + strandat 105.526 kb on + strandat 105.526 kb on + strandat 105.526 kb on + strandat 105.526 kb on + strandat 105.527 kb on - strandat 105.527 kb on - strandat 105.527 kb on - strandat 105.527 kb on - strandat 105.542 kb on - strandat 105.587 kb on - strandat 105.587 kb on - strandat 105.747 kb on + strandat 105.839 kb on + strandat 105.903 kb on + strandat 105.904 kb on - strandat 105.904 kb on - strandat 105.958 kb on + strandat 105.958 kb on + strandat 105.958 kb on + strandat 105.958 kb on + strandat 105.958 kb on + strandat 105.958 kb on + strandat 105.959 kb on - strandat 105.959 kb on - strandat 105.959 kb on - strandat 106.084 kb on + strand, within ABZR87_RS16740at 106.085 kb on - strand, within ABZR87_RS16740at 106.249 kb on + strand, within ABZR87_RS16740at 106.250 kb on - strand, within ABZR87_RS16740at 106.333 kb on + strand, within ABZR87_RS16740at 106.420 kb on + strand, within ABZR87_RS16740at 106.420 kb on + strand, within ABZR87_RS16740at 106.420 kb on + strand, within ABZR87_RS16740at 106.420 kb on + strand, within ABZR87_RS16740at 106.421 kb on - strand, within ABZR87_RS16740at 106.421 kb on - strand, within ABZR87_RS16740at 106.489 kb on + strand, within ABZR87_RS16740at 106.489 kb on + strand, within ABZR87_RS16740at 106.621 kb on + strand, within ABZR87_RS16740at 106.622 kb on - strand, within ABZR87_RS16740at 106.622 kb on - strand, within ABZR87_RS16740at 106.627 kb on + strand, within ABZR87_RS16740at 106.627 kb on + strand, within ABZR87_RS16740at 106.633 kb on + strand, within ABZR87_RS16740at 106.633 kb on + strand, within ABZR87_RS16740at 106.633 kb on + strand, within ABZR87_RS16740at 106.633 kb on + strand, within ABZR87_RS16740at 106.633 kb on + strand, within ABZR87_RS16740at 106.634 kb on - strand, within ABZR87_RS16740at 106.634 kb on - strand, within ABZR87_RS16740at 106.634 kb on - strand, within ABZR87_RS16740at 106.843 kb on + strand, within ABZR87_RS16740at 106.843 kb on + strand, within ABZR87_RS16740at 106.844 kb on - strand, within ABZR87_RS16740at 106.844 kb on - strand, within ABZR87_RS16740at 106.844 kb on - strand, within ABZR87_RS16740at 106.939 kb on + strand, within ABZR87_RS16740at 106.979 kb on + strandat 106.980 kb on - strandat 106.980 kb on - strandat 106.980 kb on - strandat 107.127 kb on - strandat 107.174 kb on + strandat 107.183 kb on + strandat 107.183 kb on + strandat 107.184 kb on - strandat 107.184 kb on - strandat 107.189 kb on + strandat 107.190 kb on - strandat 107.190 kb on - strandat 107.190 kb on - strandat 107.292 kb on - strand, within ABZR87_RS16745at 107.307 kb on - strand, within ABZR87_RS16745at 107.307 kb on - strand, within ABZR87_RS16745at 107.350 kb on - strand, within ABZR87_RS16745at 107.481 kb on - strand, within ABZR87_RS16745at 107.481 kb on - strand, within ABZR87_RS16745at 107.806 kb on + strand, within ABZR87_RS16745at 107.806 kb on + strand, within ABZR87_RS16745at 107.807 kb on - strand, within ABZR87_RS16745at 107.807 kb on - strand, within ABZR87_RS16745at 107.807 kb on - strand, within ABZR87_RS16745at 107.879 kb on + strand, within ABZR87_RS16745at 107.880 kb on - strand, within ABZR87_RS16745at 107.880 kb on - strand, within ABZR87_RS16745at 107.880 kb on - strand, within ABZR87_RS16745at 107.880 kb on - strand, within ABZR87_RS16745at 107.880 kb on - strand, within ABZR87_RS16745at 107.922 kb on - strand, within ABZR87_RS16745at 107.922 kb on - strand, within ABZR87_RS16745at 107.922 kb on - strand, within ABZR87_RS16745

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB
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105,262 - ABZR87_RS16735 0.86 -4.3
105,496 - -2.7
105,496 - -3.4
105,526 + -3.6
105,526 + -4.0
105,526 + -4.1
105,526 + -4.3
105,526 + -3.0
105,527 - -3.0
105,527 - -2.8
105,527 - -3.6
105,527 - -4.6
105,542 - -5.0
105,587 - -3.8
105,587 - -2.1
105,747 + +0.8
105,839 + +0.2
105,903 + -0.3
105,904 - -0.1
105,904 - +0.1
105,958 + -1.1
105,958 + -2.1
105,958 + -1.8
105,958 + -1.6
105,958 + -0.8
105,958 + -2.2
105,959 - -1.8
105,959 - +0.4
105,959 - -2.8
106,084 + ABZR87_RS16740 0.15 -4.2
106,085 - ABZR87_RS16740 0.15 -3.7
106,249 + ABZR87_RS16740 0.29 -2.5
106,250 - ABZR87_RS16740 0.29 -1.7
106,333 + ABZR87_RS16740 0.36 -2.8
106,420 + ABZR87_RS16740 0.44 -0.5
106,420 + ABZR87_RS16740 0.44 -1.1
106,420 + ABZR87_RS16740 0.44 -2.0
106,420 + ABZR87_RS16740 0.44 -2.1
106,421 - ABZR87_RS16740 0.44 -1.3
106,421 - ABZR87_RS16740 0.44 -1.9
106,489 + ABZR87_RS16740 0.50 -0.7
106,489 + ABZR87_RS16740 0.50 -1.8
106,621 + ABZR87_RS16740 0.61 -3.9
106,622 - ABZR87_RS16740 0.61 -1.9
106,622 - ABZR87_RS16740 0.61 -1.7
106,627 + ABZR87_RS16740 0.61 -0.9
106,627 + ABZR87_RS16740 0.61 -1.2
106,633 + ABZR87_RS16740 0.62 -1.2
106,633 + ABZR87_RS16740 0.62 -0.5
106,633 + ABZR87_RS16740 0.62 -3.3
106,633 + ABZR87_RS16740 0.62 -0.4
106,633 + ABZR87_RS16740 0.62 -2.5
106,634 - ABZR87_RS16740 0.62 -0.7
106,634 - ABZR87_RS16740 0.62 -1.6
106,634 - ABZR87_RS16740 0.62 -1.9
106,843 + ABZR87_RS16740 0.80 -1.4
106,843 + ABZR87_RS16740 0.80 -1.7
106,844 - ABZR87_RS16740 0.80 -3.4
106,844 - ABZR87_RS16740 0.80 -3.4
106,844 - ABZR87_RS16740 0.80 -2.9
106,939 + ABZR87_RS16740 0.88 -2.0
106,979 + -2.7
106,980 - -3.2
106,980 - -2.6
106,980 - -0.6
107,127 - +0.3
107,174 + -0.3
107,183 + +0.2
107,183 + +0.2
107,184 - -0.9
107,184 - +1.0
107,189 + -0.2
107,190 - -1.3
107,190 - +1.0
107,190 - +1.1
107,292 - ABZR87_RS16745 0.19 +0.7
107,307 - ABZR87_RS16745 0.20 +0.5
107,307 - ABZR87_RS16745 0.20 +1.2
107,350 - ABZR87_RS16745 0.25 -0.7
107,481 - ABZR87_RS16745 0.40 +0.1
107,481 - ABZR87_RS16745 0.40 -2.1
107,806 + ABZR87_RS16745 0.76 +0.9
107,806 + ABZR87_RS16745 0.76 +0.2
107,807 - ABZR87_RS16745 0.76 +0.8
107,807 - ABZR87_RS16745 0.76 +0.6
107,807 - ABZR87_RS16745 0.76 +0.3
107,879 + ABZR87_RS16745 0.84 -0.5
107,880 - ABZR87_RS16745 0.84 -0.1
107,880 - ABZR87_RS16745 0.84 -0.2
107,880 - ABZR87_RS16745 0.84 +0.0
107,880 - ABZR87_RS16745 0.84 +0.8
107,880 - ABZR87_RS16745 0.84 -1.2
107,922 - ABZR87_RS16745 0.89 +0.4
107,922 - ABZR87_RS16745 0.89 +1.8
107,922 - ABZR87_RS16745 0.89 -0.4

Or see this region's nucleotide sequence