Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15040

Experiment: no_plant_soil sample 3; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no_plant_soil sample 3; outgrowth in LB
3,170,516	+		ABZR87_RS15035	0.18	-0.4
3,170,516	+		ABZR87_RS15035	0.18	-0.2
3,170,516	+		ABZR87_RS15035	0.18	+0.7
3,170,582	+		ABZR87_RS15035	0.25	-1.4
3,170,582	+		ABZR87_RS15035	0.25	+0.9
3,170,582	+		ABZR87_RS15035	0.25	+0.1
3,170,582	+		ABZR87_RS15035	0.25	-0.0
3,170,582	+		ABZR87_RS15035	0.25	+0.1
3,170,582	+		ABZR87_RS15035	0.25	+0.0
3,170,583	-		ABZR87_RS15035	0.25	-0.8
3,170,583	-		ABZR87_RS15035	0.25	-2.2
3,170,583	-		ABZR87_RS15035	0.25	-0.1
3,170,583	-		ABZR87_RS15035	0.25	-0.3
3,170,583	-		ABZR87_RS15035	0.25	-1.2
3,170,601	-		ABZR87_RS15035	0.27	+0.5
3,170,611	+		ABZR87_RS15035	0.28	-0.4
3,170,681	+		ABZR87_RS15035	0.36	-0.2
3,170,681	+		ABZR87_RS15035	0.36	-0.6
3,170,681	+		ABZR87_RS15035	0.36	-1.2
3,170,682	-		ABZR87_RS15035	0.36	-1.5
3,170,682	-		ABZR87_RS15035	0.36	-0.7
3,170,682	-		ABZR87_RS15035	0.36	+0.1
3,170,682	-		ABZR87_RS15035	0.36	-0.4
3,170,682	-		ABZR87_RS15035	0.36	-0.1
3,170,714	+		ABZR87_RS15035	0.39	+1.0
3,170,715	-		ABZR87_RS15035	0.39	+1.3
3,170,715	-		ABZR87_RS15035	0.39	-0.3
3,170,799	+		ABZR87_RS15035	0.48	+0.6
3,170,799	+		ABZR87_RS15035	0.48	+0.6
3,170,799	+		ABZR87_RS15035	0.48	-1.1
3,170,799	+		ABZR87_RS15035	0.48	-0.5
3,170,799	+		ABZR87_RS15035	0.48	+0.1
3,170,799	+		ABZR87_RS15035	0.48	+0.4
3,170,799	+		ABZR87_RS15035	0.48	+0.9
3,170,799	+		ABZR87_RS15035	0.48	-2.2
3,170,799	+		ABZR87_RS15035	0.48	-0.2
3,170,799	+		ABZR87_RS15035	0.48	+0.4
3,170,799	+		ABZR87_RS15035	0.48	+0.1
3,170,800	-		ABZR87_RS15035	0.48	+0.1
3,170,800	-		ABZR87_RS15035	0.48	-0.6
3,170,847	+		ABZR87_RS15035	0.53	-0.7
3,170,848	-		ABZR87_RS15035	0.53	+0.1
3,170,873	+		ABZR87_RS15035	0.56	+1.2
3,170,874	-		ABZR87_RS15035	0.56	-1.6
3,170,874	-		ABZR87_RS15035	0.56	-0.6
3,170,874	-		ABZR87_RS15035	0.56	-1.1
3,170,972	+		ABZR87_RS15035	0.66	-1.0
3,170,972	+		ABZR87_RS15035	0.66	+1.5
3,170,972	+		ABZR87_RS15035	0.66	-0.2
3,170,972	+		ABZR87_RS15035	0.66	-0.4
3,170,973	-		ABZR87_RS15035	0.66	-0.0
3,171,042	+		ABZR87_RS15035	0.74	+0.4
3,171,042	+		ABZR87_RS15035	0.74	+0.4
3,171,043	-		ABZR87_RS15035	0.74	-1.5
3,171,043	-		ABZR87_RS15035	0.74	+0.7
3,171,245	+				-0.3
3,171,245	+				-0.4
3,171,245	+				+0.0
3,171,246	-				+0.6
3,171,246	-				+0.4
3,171,263	+				-1.4
3,171,263	+				+1.1
3,171,264	-				-1.0
3,171,264	-				-1.1
3,171,264	-				-0.7
3,171,264	-				-1.0
3,171,267	+				+0.4
3,171,268	-				+0.1
3,171,268	-				+0.9
3,171,325	-				-1.0
3,171,355	+				-0.1
3,171,356	-				-0.7
3,171,398	-				+1.3
3,171,399	+				+4.2
3,171,429	+				+1.2
3,171,430	-				+0.4
3,171,445	+				+0.4
3,171,446	-				-0.0
3,171,478	+				+0.2
3,171,478	+				+0.1
3,171,478	+				-1.3
3,171,496	+				+0.4
3,171,496	+				+0.4
3,171,496	+				-0.0
3,171,496	+				+0.9
3,171,497	-				-0.0
3,171,497	-				+0.2
3,171,497	-				-0.5
3,171,497	-				-1.4
3,171,497	-				+0.4
3,171,497	-				+1.8
3,171,497	-				+0.5
3,171,557	-				+1.3
3,171,590	+				+0.9
3,171,590	+				-0.5
3,171,590	+				-0.7
3,171,591	-				-0.7
3,171,591	-				-0.5
3,171,658	+				+0.3
3,171,721	+		ABZR87_RS15040	0.14	-0.3
3,171,721	+		ABZR87_RS15040	0.14	-0.8
3,171,722	-		ABZR87_RS15040	0.14	-0.8
3,171,876	-		ABZR87_RS15040	0.24	+0.3
3,171,884	+		ABZR87_RS15040	0.25	+0.6
3,172,088	+		ABZR87_RS15040	0.38	-1.4
3,172,089	-		ABZR87_RS15040	0.38	-0.5
3,172,089	-		ABZR87_RS15040	0.38	+0.1
3,172,124	+		ABZR87_RS15040	0.40	-0.8
3,172,124	+		ABZR87_RS15040	0.40	+0.3
3,172,125	-		ABZR87_RS15040	0.41	+0.4
3,172,253	+		ABZR87_RS15040	0.49	-0.0
3,172,253	+		ABZR87_RS15040	0.49	-1.8
3,172,253	+		ABZR87_RS15040	0.49	-0.4
3,172,253	+		ABZR87_RS15040	0.49	-0.1
3,172,253	+		ABZR87_RS15040	0.49	-0.5
3,172,253	+		ABZR87_RS15040	0.49	-0.4
3,172,254	-		ABZR87_RS15040	0.49	-0.1
3,172,254	-		ABZR87_RS15040	0.49	-2.1
3,172,277	+		ABZR87_RS15040	0.50	-0.9
3,172,277	+		ABZR87_RS15040	0.50	+0.7
3,172,277	+		ABZR87_RS15040	0.50	+0.5
3,172,277	+		ABZR87_RS15040	0.50	-1.6
3,172,277	+		ABZR87_RS15040	0.50	-0.6
3,172,278	-		ABZR87_RS15040	0.51	-1.0
3,172,278	-		ABZR87_RS15040	0.51	-0.6
3,172,278	-		ABZR87_RS15040	0.51	-1.3
3,172,362	-		ABZR87_RS15040	0.56	-0.5
3,172,548	-		ABZR87_RS15040	0.68	+0.9
3,172,548	-		ABZR87_RS15040	0.68	-0.3
3,172,557	-		ABZR87_RS15040	0.69	+1.1
3,172,642	+		ABZR87_RS15040	0.74	-0.0
3,172,642	+		ABZR87_RS15040	0.74	-1.3
3,172,642	+		ABZR87_RS15040	0.74	-0.4
3,172,643	-		ABZR87_RS15040	0.74	-1.0
3,172,643	-		ABZR87_RS15040	0.74	-1.4
3,172,643	-		ABZR87_RS15040	0.74	-0.7
3,172,643	-		ABZR87_RS15040	0.74	+0.8
3,172,643	-		ABZR87_RS15040	0.74	-0.9
3,172,646	+		ABZR87_RS15040	0.75	+0.3
3,172,646	+		ABZR87_RS15040	0.75	+0.6
3,172,646	+		ABZR87_RS15040	0.75	-0.0
3,172,646	+		ABZR87_RS15040	0.75	-1.5
3,172,646	+		ABZR87_RS15040	0.75	+0.3
3,172,646	+		ABZR87_RS15040	0.75	-0.8
3,172,647	-		ABZR87_RS15040	0.75	-1.0
3,172,647	-		ABZR87_RS15040	0.75	-0.7
3,172,647	-		ABZR87_RS15040	0.75	-1.0
3,172,647	-		ABZR87_RS15040	0.75	+0.7
3,172,647	-		ABZR87_RS15040	0.75	+0.6
3,172,647	-		ABZR87_RS15040	0.75	+1.1
3,172,647	-		ABZR87_RS15040	0.75	+0.7
3,172,647	-		ABZR87_RS15040	0.75	-1.4
3,172,758	-		ABZR87_RS15040	0.82	-0.4
3,172,871	+		ABZR87_RS15040	0.89	+1.1
3,172,871	+		ABZR87_RS15040	0.89	+0.5
3,172,871	+		ABZR87_RS15040	0.89	-0.5
3,172,872	-		ABZR87_RS15040	0.89	-0.2
3,172,907	+				-1.0
3,172,907	+				+0.7
3,172,907	+				+0.1
3,172,907	+				+2.1
3,172,907	+				-0.6
3,172,907	+				+0.2
3,172,907	+				+0.3
3,172,907	+				+0.5
3,172,907	+				-0.1
3,172,908	-				+0.4
3,172,908	-				+0.2
3,172,908	-				-0.5
3,172,908	-				-1.2
3,172,917	+				-0.7
3,172,938	-				+0.1
3,173,014	+				-0.1
3,173,030	+				-0.3
3,173,030	+				-0.0
3,173,031	-				-0.1
3,173,079	-				-1.1
3,173,172	+				+1.6
3,173,173	-				+0.1
3,173,173	-				-0.3
3,173,173	-				+0.1
3,173,299	+		ABZR87_RS15045	0.11	-1.1
3,173,299	+		ABZR87_RS15045	0.11	+1.6
3,173,300	-		ABZR87_RS15045	0.11	-1.0
3,173,466	+		ABZR87_RS15045	0.18	+0.3
3,173,629	-		ABZR87_RS15045	0.25	-0.8
3,173,649	+		ABZR87_RS15045	0.26	-0.5
3,173,934	+		ABZR87_RS15045	0.38	+0.5
3,173,934	+		ABZR87_RS15045	0.38	-1.0
3,173,935	-		ABZR87_RS15045	0.38	-0.9
3,173,946	+		ABZR87_RS15045	0.38	-0.1
3,173,947	-		ABZR87_RS15045	0.38	-0.6