Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS13615

Experiment: no_plant_soil sample 3; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no_plant_soil sample 3; outgrowth in LB
2,879,029	+		ABZR87_RS13605	0.15	-1.4
2,879,063	-		ABZR87_RS13605	0.21	-0.0
2,879,086	+		ABZR87_RS13605	0.25	-0.3
2,879,086	+		ABZR87_RS13605	0.25	+0.8
2,879,086	+		ABZR87_RS13605	0.25	+0.5
2,879,087	-		ABZR87_RS13605	0.25	-0.3
2,879,087	-		ABZR87_RS13605	0.25	-0.1
2,879,087	-		ABZR87_RS13605	0.25	+1.2
2,879,131	+		ABZR87_RS13605	0.34	-2.1
2,879,170	+		ABZR87_RS13605	0.41	+1.1
2,879,171	-		ABZR87_RS13605	0.41	-0.2
2,879,171	-		ABZR87_RS13605	0.41	-0.2
2,879,171	-		ABZR87_RS13605	0.41	+0.4
2,879,171	-		ABZR87_RS13605	0.41	+0.1
2,879,196	+		ABZR87_RS13605	0.45	-0.5
2,879,196	+		ABZR87_RS13605	0.45	+0.3
2,879,196	+		ABZR87_RS13605	0.45	+0.7
2,879,196	+		ABZR87_RS13605	0.45	+0.6
2,879,197	-		ABZR87_RS13605	0.46	-2.4
2,879,464	+				-0.0
2,879,464	+				+0.9
2,879,464	+				-1.4
2,879,465	-				-2.2
2,879,467	+				+0.1
2,879,468	-				+1.5
2,879,490	-				-1.4
2,879,537	+		ABZR87_RS13610	0.21	-1.1
2,879,537	+		ABZR87_RS13610	0.21	+0.0
2,879,538	-		ABZR87_RS13610	0.21	-0.1
2,879,588	+		ABZR87_RS13610	0.43	-1.4
2,879,589	-		ABZR87_RS13610	0.43	+0.2
2,879,609	+		ABZR87_RS13610	0.52	-1.4
2,879,714	+				-0.3
2,879,714	+				+0.7
2,879,715	-				-2.6
2,879,715	-				-1.4
2,879,715	-				+0.6
2,879,733	+				+1.1
2,879,734	-				-0.5
2,879,749	+				-0.3
2,879,750	-				+1.1
2,879,750	-				-0.2
2,879,750	-				-0.0
2,879,750	-				+0.7
2,879,750	-				+0.3
2,879,750	-				+0.4
2,879,764	+				+2.8
2,879,764	+				-0.4
2,879,764	+				+1.5
2,879,765	-				+0.3
2,879,765	-				+0.9
2,879,765	-				+0.8
2,879,765	-				-0.2
2,879,765	-				-1.2
2,879,782	+				-0.9
2,879,783	-				+0.1
2,879,789	+				+1.6
2,879,790	-				+0.3
2,879,856	+				+0.7
2,879,857	+				-1.3
2,879,857	+				-0.7
2,879,857	+				+0.5
2,879,857	+				-0.3
2,879,857	+				-0.6
2,879,858	+				-1.0
2,879,858	-				+0.1
2,879,858	-				+0.1
2,879,858	-				+1.1
2,879,858	-				+0.1
2,879,858	-				-0.4
2,879,861	+				+1.0
2,879,861	+				+0.6
2,879,861	+				-0.3
2,879,861	+				-1.9
2,879,861	+				-0.3
2,879,862	-				-0.9
2,879,862	-				+0.3
2,879,862	-				+0.1
2,879,862	-				+1.1
2,879,862	-				+0.3
2,879,862	-				+0.8
2,879,901	+				+0.8
2,879,901	+				-0.1
2,879,901	+				-1.7
2,879,902	-				+0.7
2,879,902	-				+0.3
2,879,943	+				-1.2
2,879,943	+				-0.2
2,879,944	-				-0.5
2,879,944	-				-0.5
2,879,944	-				-1.3
2,879,971	-				-1.9
2,879,971	-				+0.7
2,879,975	+				-1.2
2,880,028	+				-1.6
2,880,046	-				+0.3
2,880,073	+		ABZR87_RS13615	0.16	+1.1
2,880,073	+		ABZR87_RS13615	0.16	+0.1
2,880,073	+		ABZR87_RS13615	0.16	+0.4
2,880,148	+		ABZR87_RS13615	0.34	+0.4
2,880,276	+		ABZR87_RS13615	0.65	-0.5
2,880,277	-		ABZR87_RS13615	0.65	+0.0
2,880,277	-		ABZR87_RS13615	0.65	-1.5
2,880,277	-		ABZR87_RS13615	0.65	+0.8
2,880,288	+		ABZR87_RS13615	0.68	+0.6
2,880,288	+		ABZR87_RS13615	0.68	+0.4
2,880,288	+		ABZR87_RS13615	0.68	+0.5
2,880,288	+		ABZR87_RS13615	0.68	+2.4
2,880,288	+		ABZR87_RS13615	0.68	+0.9
2,880,289	-		ABZR87_RS13615	0.68	+1.1
2,880,289	-		ABZR87_RS13615	0.68	-0.4
2,880,289	-		ABZR87_RS13615	0.68	+0.5
2,880,408	+				-2.1
2,880,408	+				-0.0
2,880,409	-				+0.5
2,880,409	-				+0.5
2,880,409	-				+0.6
2,880,410	+				+1.0
2,880,410	+				-0.7
2,880,410	+				+0.3
2,880,410	+				-0.5
2,880,411	-				-1.5
2,880,411	-				+0.3
2,880,411	-				+0.1
2,880,411	-				-0.2
2,880,411	-				-2.0
2,880,411	-				+0.2
2,880,411	-				-0.4
2,880,428	-				-1.0
2,880,465	+				-0.2
2,880,465	+				+0.1
2,880,465	+				+0.1
2,880,465	+				+0.2
2,880,465	+				+1.0
2,880,466	-				+0.7
2,880,466	-				-0.8
2,880,466	-				+0.1
2,880,466	-				-0.4
2,880,599	+				-0.7
2,880,599	+				-0.2
2,880,600	-				+0.7
2,880,621	+				-0.6
2,880,622	-				+0.4
2,880,680	+				+0.4
2,880,688	+				+0.3
2,880,689	-				-0.5
2,880,689	-				-0.2
2,880,689	-				-0.1
2,880,710	+				+1.0
2,880,711	-				+0.2
2,880,711	-				+0.4
2,880,865	+		ABZR87_RS13620	0.40	-2.9
2,880,865	+		ABZR87_RS13620	0.40	+0.9
2,880,865	+		ABZR87_RS13620	0.40	+1.0
2,880,866	-		ABZR87_RS13620	0.40	+0.7
2,880,866	-		ABZR87_RS13620	0.40	+0.5
2,880,866	-		ABZR87_RS13620	0.40	-1.4
2,880,866	-		ABZR87_RS13620	0.40	+0.7
2,880,866	-		ABZR87_RS13620	0.40	+0.0
2,880,866	-		ABZR87_RS13620	0.40	-0.8
2,880,899	+		ABZR87_RS13620	0.48	-0.6
2,880,899	+		ABZR87_RS13620	0.48	-0.1
2,880,900	-		ABZR87_RS13620	0.48	-0.6
2,880,900	-		ABZR87_RS13620	0.48	-0.2
2,880,932	+		ABZR87_RS13620	0.56	+0.5
2,880,933	-		ABZR87_RS13620	0.56	+0.7
2,880,933	-		ABZR87_RS13620	0.56	-0.7
2,880,933	-		ABZR87_RS13620	0.56	-0.9
2,881,020	+		ABZR87_RS13620	0.77	-0.8
2,881,052	+		ABZR87_RS13620	0.84	-0.5
2,881,053	-		ABZR87_RS13620	0.84	-1.3
2,881,089	+				+0.1
2,881,089	+				+1.6
2,881,089	+				+0.6
2,881,089	+				+1.1
2,881,090	-				-0.1
2,881,093	+				+1.3
2,881,093	+				-1.1
2,881,093	+				+0.1
2,881,093	+				+0.8
2,881,093	+				+0.9
2,881,094	-				-0.2
2,881,105	+				-1.1
2,881,105	+				-1.4
2,881,105	+				-0.4
2,881,106	-				+0.0
2,881,212	+				+0.3
2,881,212	+				-0.2
2,881,212	+				-0.5
2,881,213	-				-0.2
2,881,213	-				-2.4
2,881,213	-				-0.0
2,881,213	-				+0.7
2,881,213	-				+0.6
2,881,217	+				-1.3
2,881,217	+				+0.2
2,881,218	-				+0.9
2,881,238	+				-0.0
2,881,260	+				+1.0
2,881,260	+				-0.5
2,881,260	+				-0.5
2,881,261	-				-0.4
2,881,261	-				+0.5
2,881,261	-				+0.1
2,881,261	-				+0.3
2,881,261	-				-1.6
2,881,335	+		ABZR87_RS13625	0.21	+0.1
2,881,335	+		ABZR87_RS13625	0.21	+0.6
2,881,335	+		ABZR87_RS13625	0.21	-0.0
2,881,384	-		ABZR87_RS13625	0.30	+0.3
2,881,405	+		ABZR87_RS13625	0.34	-0.8
2,881,405	+		ABZR87_RS13625	0.34	+0.0