Experiment: no_plant_soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS10770 and ABZR87_RS10775 are separated by 188 nucleotides ABZR87_RS10775 and ABZR87_RS10780 are separated by 216 nucleotides
ABZR87_RS10770: ABZR87_RS10770 - transcription termination factor Rho, at 2,278,413 to 2,279,675
_RS10770
ABZR87_RS10775: ABZR87_RS10775 - thioredoxin TrxA, at 2,279,864 to 2,280,190
_RS10775
ABZR87_RS10780: ABZR87_RS10780 - PD-(D/E)XK nuclease family protein, at 2,280,407 to 2,283,250
_RS10780
Position (kb)
2279
2280
2281 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2279.778 kb on + strand at 2279.865 kb on + strand at 2279.865 kb on + strand at 2279.866 kb on - strand at 2280.242 kb on - strand at 2280.242 kb on - strand at 2280.242 kb on - strand at 2280.242 kb on - strand at 2280.242 kb on - strand at 2280.247 kb on - strand at 2280.247 kb on - strand at 2280.254 kb on + strand at 2280.270 kb on + strand at 2280.270 kb on + strand at 2280.271 kb on - strand at 2280.303 kb on + strand at 2280.303 kb on + strand at 2280.303 kb on + strand at 2280.303 kb on + strand at 2280.303 kb on + strand at 2280.304 kb on - strand at 2280.304 kb on - strand at 2280.304 kb on - strand at 2280.304 kb on - strand at 2280.305 kb on + strand at 2280.305 kb on + strand at 2280.305 kb on + strand at 2280.305 kb on + strand at 2280.305 kb on + strand at 2280.305 kb on + strand at 2280.305 kb on + strand at 2280.305 kb on + strand at 2280.306 kb on - strand at 2280.306 kb on - strand at 2280.308 kb on + strand at 2280.309 kb on - strand at 2280.353 kb on - strand at 2280.387 kb on + strand at 2280.387 kb on + strand at 2280.389 kb on + strand at 2280.390 kb on - strand at 2280.390 kb on - strand at 2280.398 kb on - strand at 2280.398 kb on - strand at 2280.509 kb on - strand at 2280.509 kb on - strand at 2280.509 kb on - strand at 2280.538 kb on - strand at 2280.836 kb on - strand, within ABZR87_RS10780 at 2280.899 kb on + strand, within ABZR87_RS10780 at 2280.900 kb on - strand, within ABZR87_RS10780 at 2280.900 kb on - strand, within ABZR87_RS10780
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB remove 2,279,778 + +0.9 2,279,865 + -2.2 2,279,865 + +1.4 2,279,866 - +0.3 2,280,242 - +2.5 2,280,242 - +0.1 2,280,242 - +1.2 2,280,242 - +0.7 2,280,242 - -0.9 2,280,247 - -1.1 2,280,247 - -0.3 2,280,254 + +0.7 2,280,270 + -0.2 2,280,270 + +0.6 2,280,271 - +1.0 2,280,303 + +0.6 2,280,303 + +0.6 2,280,303 + +0.4 2,280,303 + +0.9 2,280,303 + +0.8 2,280,304 - +1.2 2,280,304 - +0.1 2,280,304 - +0.3 2,280,304 - +0.6 2,280,305 + +0.3 2,280,305 + +0.7 2,280,305 + +0.4 2,280,305 + +0.5 2,280,305 + +1.1 2,280,305 + -2.2 2,280,305 + +0.3 2,280,305 + +0.9 2,280,306 - -0.1 2,280,306 - -2.6 2,280,308 + -1.3 2,280,309 - -0.6 2,280,353 - -0.5 2,280,387 + +1.3 2,280,387 + +0.2 2,280,389 + +0.7 2,280,390 - -1.9 2,280,390 - -0.0 2,280,398 - -0.3 2,280,398 - -0.9 2,280,509 - +1.6 2,280,509 - +1.6 2,280,509 - +2.2 2,280,538 - +2.2 2,280,836 - ABZR87_RS10780 0.15 -1.3 2,280,899 + ABZR87_RS10780 0.17 +0.6 2,280,900 - ABZR87_RS10780 0.17 +2.2 2,280,900 - ABZR87_RS10780 0.17 +2.2
Or see this region's nucleotide sequence