Experiment: no_plant_soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS10190 and ABZR87_RS10195 are separated by 30 nucleotides ABZR87_RS10195 and ABZR87_RS10200 are separated by 62 nucleotides ABZR87_RS10200 and ABZR87_RS10205 are separated by 1 nucleotides ABZR87_RS10205 and ABZR87_RS10210 are separated by 7 nucleotides
ABZR87_RS10190: ABZR87_RS10190 - translation elongation factor 4, at 2,161,948 to 2,163,747
_RS10190
ABZR87_RS10195: ABZR87_RS10195 - signal peptidase I, at 2,163,778 to 2,164,671
_RS10195
ABZR87_RS10200: ABZR87_RS10200 - DUF4845 domain-containing protein, at 2,164,734 to 2,165,102
_RS10200
ABZR87_RS10205: ABZR87_RS10205 - ribonuclease III, at 2,165,104 to 2,165,874
_RS10205
ABZR87_RS10210: ABZR87_RS10210 - GTPase Era, at 2,165,882 to 2,166,820
_RS10210
Position (kb)
2164
2165
2166 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2163.925 kb on + strand, within ABZR87_RS10195 at 2164.003 kb on + strand, within ABZR87_RS10195 at 2164.141 kb on + strand, within ABZR87_RS10195 at 2164.330 kb on + strand, within ABZR87_RS10195 at 2164.444 kb on + strand, within ABZR87_RS10195 at 2164.490 kb on - strand, within ABZR87_RS10195 at 2164.531 kb on + strand, within ABZR87_RS10195 at 2164.778 kb on + strand, within ABZR87_RS10200 at 2164.778 kb on + strand, within ABZR87_RS10200 at 2164.863 kb on + strand, within ABZR87_RS10200 at 2165.034 kb on + strand, within ABZR87_RS10200 at 2165.034 kb on + strand, within ABZR87_RS10200 at 2165.082 kb on + strand at 2165.082 kb on + strand at 2165.120 kb on + strand at 2165.121 kb on - strand at 2165.879 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB remove 2,163,925 + ABZR87_RS10195 0.16 -2.1 2,164,003 + ABZR87_RS10195 0.25 +0.1 2,164,141 + ABZR87_RS10195 0.41 +0.5 2,164,330 + ABZR87_RS10195 0.62 -1.5 2,164,444 + ABZR87_RS10195 0.74 -2.1 2,164,490 - ABZR87_RS10195 0.80 -2.2 2,164,531 + ABZR87_RS10195 0.84 -1.6 2,164,778 + ABZR87_RS10200 0.12 -0.5 2,164,778 + ABZR87_RS10200 0.12 -0.6 2,164,863 + ABZR87_RS10200 0.35 +0.4 2,165,034 + ABZR87_RS10200 0.81 -1.5 2,165,034 + ABZR87_RS10200 0.81 +0.2 2,165,082 + -1.9 2,165,082 + +0.2 2,165,120 + -2.8 2,165,121 - +0.1 2,165,879 + -0.2
Or see this region's nucleotide sequence