Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09650

Experiment: no_plant_soil sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS09640 and ABZR87_RS09645 are separated by 64 nucleotidesABZR87_RS09645 and ABZR87_RS09650 are separated by 0 nucleotidesABZR87_RS09650 and ABZR87_RS09655 overlap by 4 nucleotidesABZR87_RS09655 and ABZR87_RS09660 are separated by 93 nucleotides ABZR87_RS09640: ABZR87_RS09640 - M48 family metallopeptidase, at 2,043,363 to 2,044,622 _RS09640 ABZR87_RS09645: ABZR87_RS09645 - oligoribonuclease, at 2,044,687 to 2,045,346 _RS09645 ABZR87_RS09650: ABZR87_RS09650 - molybdopterin adenylyltransferase, at 2,045,347 to 2,045,994 _RS09650 ABZR87_RS09655: ABZR87_RS09655 - ribosome biogenesis factor YjgA, at 2,045,991 to 2,046,608 _RS09655 ABZR87_RS09660: ABZR87_RS09660 - metalloprotease PmbA, at 2,046,702 to 2,048,075 _RS09660 Position (kb) 2045 2046Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2044.457 kb on - strand, within ABZR87_RS09640at 2044.457 kb on - strand, within ABZR87_RS09640at 2044.611 kb on - strandat 2044.622 kb on + strandat 2044.622 kb on + strandat 2044.622 kb on + strandat 2044.636 kb on + strandat 2044.637 kb on - strandat 2044.637 kb on - strandat 2044.643 kb on + strandat 2044.643 kb on + strandat 2044.643 kb on + strandat 2044.643 kb on + strandat 2044.657 kb on - strandat 2045.424 kb on - strand, within ABZR87_RS09650at 2045.424 kb on - strand, within ABZR87_RS09650at 2045.424 kb on - strand, within ABZR87_RS09650at 2045.424 kb on - strand, within ABZR87_RS09650at 2045.450 kb on + strand, within ABZR87_RS09650at 2045.450 kb on + strand, within ABZR87_RS09650at 2045.824 kb on + strand, within ABZR87_RS09650at 2045.824 kb on + strand, within ABZR87_RS09650at 2045.824 kb on + strand, within ABZR87_RS09650at 2045.824 kb on + strand, within ABZR87_RS09650at 2045.825 kb on - strand, within ABZR87_RS09650at 2045.825 kb on - strand, within ABZR87_RS09650at 2045.894 kb on + strand, within ABZR87_RS09650at 2045.894 kb on + strand, within ABZR87_RS09650at 2045.895 kb on - strand, within ABZR87_RS09650at 2045.895 kb on - strand, within ABZR87_RS09650at 2046.033 kb on + strandat 2046.034 kb on - strandat 2046.143 kb on + strand, within ABZR87_RS09655at 2046.144 kb on - strand, within ABZR87_RS09655at 2046.144 kb on - strand, within ABZR87_RS09655at 2046.346 kb on + strand, within ABZR87_RS09655at 2046.346 kb on + strand, within ABZR87_RS09655at 2046.346 kb on + strand, within ABZR87_RS09655at 2046.346 kb on + strand, within ABZR87_RS09655at 2046.346 kb on + strand, within ABZR87_RS09655at 2046.347 kb on - strand, within ABZR87_RS09655at 2046.347 kb on - strand, within ABZR87_RS09655at 2046.347 kb on - strand, within ABZR87_RS09655at 2046.577 kb on + strandat 2046.577 kb on + strandat 2046.577 kb on + strandat 2046.577 kb on + strandat 2046.577 kb on + strandat 2046.578 kb on - strandat 2046.588 kb on - strandat 2046.620 kb on + strandat 2046.620 kb on + strandat 2046.620 kb on + strandat 2046.620 kb on + strandat 2046.621 kb on - strandat 2046.628 kb on + strandat 2046.628 kb on + strandat 2046.628 kb on + strandat 2046.628 kb on + strandat 2046.629 kb on - strandat 2046.629 kb on - strandat 2046.629 kb on - strandat 2046.701 kb on + strandat 2046.701 kb on + strandat 2046.702 kb on - strandat 2046.702 kb on - strandat 2046.702 kb on - strandat 2046.702 kb on - strandat 2046.702 kb on - strandat 2046.702 kb on - strandat 2046.702 kb on - strandat 2046.744 kb on + strandat 2046.859 kb on + strand, within ABZR87_RS09660at 2046.860 kb on - strand, within ABZR87_RS09660at 2046.860 kb on - strand, within ABZR87_RS09660at 2046.860 kb on - strand, within ABZR87_RS09660

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB
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2,044,457 - ABZR87_RS09640 0.87 -1.9
2,044,457 - ABZR87_RS09640 0.87 +0.2
2,044,611 - -1.7
2,044,622 + -1.1
2,044,622 + -0.7
2,044,622 + -0.3
2,044,636 + -0.4
2,044,637 - -1.8
2,044,637 - -0.3
2,044,643 + +1.1
2,044,643 + -0.1
2,044,643 + +0.3
2,044,643 + +1.5
2,044,657 - +0.2
2,045,424 - ABZR87_RS09650 0.12 -1.0
2,045,424 - ABZR87_RS09650 0.12 -1.3
2,045,424 - ABZR87_RS09650 0.12 -1.9
2,045,424 - ABZR87_RS09650 0.12 -3.8
2,045,450 + ABZR87_RS09650 0.16 -1.2
2,045,450 + ABZR87_RS09650 0.16 -1.4
2,045,824 + ABZR87_RS09650 0.74 -0.7
2,045,824 + ABZR87_RS09650 0.74 -1.6
2,045,824 + ABZR87_RS09650 0.74 -2.0
2,045,824 + ABZR87_RS09650 0.74 -1.5
2,045,825 - ABZR87_RS09650 0.74 -1.3
2,045,825 - ABZR87_RS09650 0.74 -1.1
2,045,894 + ABZR87_RS09650 0.84 -1.8
2,045,894 + ABZR87_RS09650 0.84 -0.3
2,045,895 - ABZR87_RS09650 0.85 -1.2
2,045,895 - ABZR87_RS09650 0.85 -2.8
2,046,033 + +0.4
2,046,034 - -0.4
2,046,143 + ABZR87_RS09655 0.25 -1.0
2,046,144 - ABZR87_RS09655 0.25 +0.2
2,046,144 - ABZR87_RS09655 0.25 -1.5
2,046,346 + ABZR87_RS09655 0.57 -1.8
2,046,346 + ABZR87_RS09655 0.57 -1.0
2,046,346 + ABZR87_RS09655 0.57 -1.5
2,046,346 + ABZR87_RS09655 0.57 -1.0
2,046,346 + ABZR87_RS09655 0.57 -1.8
2,046,347 - ABZR87_RS09655 0.58 -1.9
2,046,347 - ABZR87_RS09655 0.58 -0.8
2,046,347 - ABZR87_RS09655 0.58 -0.3
2,046,577 + -2.6
2,046,577 + -1.6
2,046,577 + -2.7
2,046,577 + -1.0
2,046,577 + -0.3
2,046,578 - -0.8
2,046,588 - +0.5
2,046,620 + -0.2
2,046,620 + +0.0
2,046,620 + -1.6
2,046,620 + -0.3
2,046,621 - -0.5
2,046,628 + -0.5
2,046,628 + -0.0
2,046,628 + -0.9
2,046,628 + -0.3
2,046,629 - +0.4
2,046,629 - -0.4
2,046,629 - +0.6
2,046,701 + +0.8
2,046,701 + -0.3
2,046,702 - -1.3
2,046,702 - +0.3
2,046,702 - +0.3
2,046,702 - +1.3
2,046,702 - -0.6
2,046,702 - +0.7
2,046,702 - -0.4
2,046,744 + +0.2
2,046,859 + ABZR87_RS09660 0.11 +0.3
2,046,860 - ABZR87_RS09660 0.11 +0.4
2,046,860 - ABZR87_RS09660 0.11 -1.1
2,046,860 - ABZR87_RS09660 0.11 -0.3

Or see this region's nucleotide sequence