Experiment: no_plant_soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS08650 and ABZR87_RS08655 are separated by 12 nucleotides ABZR87_RS08655 and ABZR87_RS08660 are separated by 3 nucleotides ABZR87_RS08660 and ABZR87_RS08665 are separated by 33 nucleotides ABZR87_RS08665 and ABZR87_RS08670 overlap by 14 nucleotides
ABZR87_RS08650: ABZR87_RS08650 - dTDP-4-dehydrorhamnose reductase, at 1,838,667 to 1,839,584
_RS08650
ABZR87_RS08655: ABZR87_RS08655 - glucose-1-phosphate thymidylyltransferase RfbA, at 1,839,597 to 1,840,469
_RS08655
ABZR87_RS08660: ABZR87_RS08660 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 1,840,473 to 1,841,021
_RS08660
ABZR87_RS08665: ABZR87_RS08665 - GNAT family N-acetyltransferase, at 1,841,055 to 1,841,792
_RS08665
ABZR87_RS08670: ABZR87_RS08670 - dTDP-4-amino-4,6-dideoxygalactose transaminase, at 1,841,779 to 1,842,900
_RS08670
Position (kb) 1840
1841
1842 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1839.524 kb on + strand at 1839.524 kb on + strand at 1839.532 kb on + strand at 1839.532 kb on + strand at 1839.533 kb on - strand at 1839.596 kb on + strand at 1839.596 kb on + strand at 1839.597 kb on - strand at 1839.597 kb on - strand at 1839.597 kb on - strand at 1839.612 kb on - strand at 1839.651 kb on - strand at 1839.702 kb on + strand, within ABZR87_RS08655 at 1839.702 kb on + strand, within ABZR87_RS08655 at 1839.703 kb on - strand, within ABZR87_RS08655 at 1839.703 kb on - strand, within ABZR87_RS08655 at 1839.703 kb on - strand, within ABZR87_RS08655 at 1839.703 kb on - strand, within ABZR87_RS08655 at 1839.703 kb on - strand, within ABZR87_RS08655 at 1839.703 kb on - strand, within ABZR87_RS08655 at 1839.703 kb on - strand, within ABZR87_RS08655 at 1839.706 kb on - strand, within ABZR87_RS08655 at 1839.736 kb on + strand, within ABZR87_RS08655 at 1839.743 kb on + strand, within ABZR87_RS08655 at 1839.744 kb on - strand, within ABZR87_RS08655 at 1839.759 kb on - strand, within ABZR87_RS08655 at 1839.771 kb on - strand, within ABZR87_RS08655 at 1839.816 kb on - strand, within ABZR87_RS08655 at 1839.828 kb on + strand, within ABZR87_RS08655 at 1839.829 kb on - strand, within ABZR87_RS08655 at 1839.829 kb on - strand, within ABZR87_RS08655 at 1839.829 kb on - strand, within ABZR87_RS08655 at 1839.872 kb on + strand, within ABZR87_RS08655 at 1839.926 kb on + strand, within ABZR87_RS08655 at 1840.002 kb on + strand, within ABZR87_RS08655 at 1840.002 kb on + strand, within ABZR87_RS08655 at 1840.068 kb on - strand, within ABZR87_RS08655 at 1840.068 kb on - strand, within ABZR87_RS08655 at 1840.120 kb on - strand, within ABZR87_RS08655 at 1840.380 kb on - strand, within ABZR87_RS08655 at 1840.382 kb on + strand at 1840.431 kb on + strand at 1840.504 kb on + strand at 1840.505 kb on - strand at 1840.505 kb on - strand at 1840.561 kb on - strand, within ABZR87_RS08660 at 1840.581 kb on - strand, within ABZR87_RS08660 at 1840.600 kb on + strand, within ABZR87_RS08660 at 1840.622 kb on + strand, within ABZR87_RS08660 at 1840.623 kb on - strand, within ABZR87_RS08660 at 1840.720 kb on + strand, within ABZR87_RS08660 at 1840.721 kb on - strand, within ABZR87_RS08660 at 1840.721 kb on - strand, within ABZR87_RS08660 at 1840.725 kb on - strand, within ABZR87_RS08660 at 1840.725 kb on - strand, within ABZR87_RS08660 at 1840.725 kb on - strand, within ABZR87_RS08660 at 1840.725 kb on - strand, within ABZR87_RS08660 at 1840.777 kb on + strand, within ABZR87_RS08660 at 1840.840 kb on + strand, within ABZR87_RS08660 at 1840.841 kb on - strand, within ABZR87_RS08660 at 1840.841 kb on - strand, within ABZR87_RS08660 at 1840.864 kb on - strand, within ABZR87_RS08660 at 1840.878 kb on + strand, within ABZR87_RS08660 at 1840.879 kb on - strand, within ABZR87_RS08660 at 1840.879 kb on - strand, within ABZR87_RS08660 at 1840.880 kb on - strand, within ABZR87_RS08660 at 1840.881 kb on + strand, within ABZR87_RS08660 at 1840.881 kb on + strand, within ABZR87_RS08660 at 1840.881 kb on + strand, within ABZR87_RS08660 at 1840.881 kb on + strand, within ABZR87_RS08660 at 1840.881 kb on + strand, within ABZR87_RS08660 at 1840.882 kb on - strand, within ABZR87_RS08660 at 1840.882 kb on - strand, within ABZR87_RS08660 at 1840.904 kb on + strand, within ABZR87_RS08660 at 1840.996 kb on + strand at 1840.997 kb on - strand at 1841.019 kb on + strand at 1841.019 kb on + strand at 1841.020 kb on - strand at 1841.044 kb on + strand at 1841.065 kb on - strand at 1841.065 kb on - strand at 1841.068 kb on + strand at 1841.168 kb on + strand, within ABZR87_RS08665 at 1841.168 kb on + strand, within ABZR87_RS08665 at 1841.169 kb on - strand, within ABZR87_RS08665 at 1841.234 kb on + strand, within ABZR87_RS08665 at 1841.234 kb on + strand, within ABZR87_RS08665 at 1841.235 kb on - strand, within ABZR87_RS08665 at 1841.235 kb on - strand, within ABZR87_RS08665 at 1841.255 kb on + strand, within ABZR87_RS08665 at 1841.255 kb on + strand, within ABZR87_RS08665 at 1841.256 kb on - strand, within ABZR87_RS08665 at 1841.256 kb on - strand, within ABZR87_RS08665 at 1841.256 kb on - strand, within ABZR87_RS08665 at 1841.256 kb on - strand, within ABZR87_RS08665 at 1841.265 kb on + strand, within ABZR87_RS08665 at 1841.265 kb on + strand, within ABZR87_RS08665 at 1841.266 kb on - strand, within ABZR87_RS08665 at 1841.266 kb on - strand, within ABZR87_RS08665 at 1841.266 kb on - strand, within ABZR87_RS08665 at 1841.266 kb on - strand, within ABZR87_RS08665 at 1841.266 kb on - strand, within ABZR87_RS08665 at 1841.266 kb on - strand, within ABZR87_RS08665 at 1841.285 kb on - strand, within ABZR87_RS08665 at 1841.285 kb on - strand, within ABZR87_RS08665 at 1841.285 kb on - strand, within ABZR87_RS08665 at 1841.285 kb on - strand, within ABZR87_RS08665 at 1841.292 kb on + strand, within ABZR87_RS08665 at 1841.389 kb on - strand, within ABZR87_RS08665 at 1841.445 kb on + strand, within ABZR87_RS08665 at 1841.446 kb on - strand, within ABZR87_RS08665 at 1841.617 kb on - strand, within ABZR87_RS08665 at 1841.660 kb on + strand, within ABZR87_RS08665 at 1841.693 kb on + strand, within ABZR87_RS08665 at 1841.705 kb on - strand, within ABZR87_RS08665 at 1841.705 kb on - strand, within ABZR87_RS08665 at 1841.755 kb on - strand at 1841.793 kb on + strand at 1841.793 kb on + strand at 1841.793 kb on + strand at 1841.793 kb on + strand at 1841.824 kb on + strand at 1841.825 kb on - strand at 1841.855 kb on + strand at 1841.856 kb on - strand at 1841.919 kb on + strand, within ABZR87_RS08670 at 1841.981 kb on + strand, within ABZR87_RS08670 at 1842.001 kb on - strand, within ABZR87_RS08670
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB remove 1,839,524 + -1.5 1,839,524 + -0.7 1,839,532 + -2.6 1,839,532 + -2.7 1,839,533 - -0.5 1,839,596 + -1.8 1,839,596 + -1.9 1,839,597 - +1.3 1,839,597 - +0.9 1,839,597 - +0.3 1,839,612 - +3.9 1,839,651 - +0.3 1,839,702 + ABZR87_RS08655 0.12 +2.9 1,839,702 + ABZR87_RS08655 0.12 +2.9 1,839,703 - ABZR87_RS08655 0.12 +0.9 1,839,703 - ABZR87_RS08655 0.12 +0.6 1,839,703 - ABZR87_RS08655 0.12 +1.9 1,839,703 - ABZR87_RS08655 0.12 -0.1 1,839,703 - ABZR87_RS08655 0.12 +2.9 1,839,703 - ABZR87_RS08655 0.12 +0.9 1,839,703 - ABZR87_RS08655 0.12 +0.3 1,839,706 - ABZR87_RS08655 0.12 -0.1 1,839,736 + ABZR87_RS08655 0.16 +0.1 1,839,743 + ABZR87_RS08655 0.17 +2.9 1,839,744 - ABZR87_RS08655 0.17 +1.3 1,839,759 - ABZR87_RS08655 0.19 +2.9 1,839,771 - ABZR87_RS08655 0.20 -0.3 1,839,816 - ABZR87_RS08655 0.25 +1.3 1,839,828 + ABZR87_RS08655 0.26 +1.9 1,839,829 - ABZR87_RS08655 0.27 +1.9 1,839,829 - ABZR87_RS08655 0.27 +0.3 1,839,829 - ABZR87_RS08655 0.27 +1.9 1,839,872 + ABZR87_RS08655 0.32 -0.5 1,839,926 + ABZR87_RS08655 0.38 +1.3 1,840,002 + ABZR87_RS08655 0.46 +2.9 1,840,002 + ABZR87_RS08655 0.46 +2.9 1,840,068 - ABZR87_RS08655 0.54 -0.4 1,840,068 - ABZR87_RS08655 0.54 +2.9 1,840,120 - ABZR87_RS08655 0.60 -0.1 1,840,380 - ABZR87_RS08655 0.90 +2.9 1,840,382 + +2.9 1,840,431 + +2.9 1,840,504 + -1.9 1,840,505 - -0.7 1,840,505 - -1.2 1,840,561 - ABZR87_RS08660 0.16 -0.1 1,840,581 - ABZR87_RS08660 0.20 -0.3 1,840,600 + ABZR87_RS08660 0.23 +1.9 1,840,622 + ABZR87_RS08660 0.27 -0.5 1,840,623 - ABZR87_RS08660 0.27 -0.1 1,840,720 + ABZR87_RS08660 0.45 -1.5 1,840,721 - ABZR87_RS08660 0.45 -1.8 1,840,721 - ABZR87_RS08660 0.45 -0.3 1,840,725 - ABZR87_RS08660 0.46 -0.4 1,840,725 - ABZR87_RS08660 0.46 -0.1 1,840,725 - ABZR87_RS08660 0.46 +0.5 1,840,725 - ABZR87_RS08660 0.46 +0.6 1,840,777 + ABZR87_RS08660 0.55 +0.3 1,840,840 + ABZR87_RS08660 0.67 -0.4 1,840,841 - ABZR87_RS08660 0.67 +0.3 1,840,841 - ABZR87_RS08660 0.67 +1.7 1,840,864 - ABZR87_RS08660 0.71 -1.1 1,840,878 + ABZR87_RS08660 0.74 +0.9 1,840,879 - ABZR87_RS08660 0.74 -0.3 1,840,879 - ABZR87_RS08660 0.74 -1.4 1,840,880 - ABZR87_RS08660 0.74 -0.5 1,840,881 + ABZR87_RS08660 0.74 -0.9 1,840,881 + ABZR87_RS08660 0.74 -0.3 1,840,881 + ABZR87_RS08660 0.74 +0.9 1,840,881 + ABZR87_RS08660 0.74 +0.9 1,840,881 + ABZR87_RS08660 0.74 -0.9 1,840,882 - ABZR87_RS08660 0.74 -0.5 1,840,882 - ABZR87_RS08660 0.74 +1.7 1,840,904 + ABZR87_RS08660 0.79 -1.5 1,840,996 + -1.8 1,840,997 - -1.0 1,841,019 + -1.1 1,841,019 + -0.4 1,841,020 - +1.2 1,841,044 + +0.4 1,841,065 - +0.1 1,841,065 - +2.9 1,841,068 + +1.6 1,841,168 + ABZR87_RS08665 0.15 +1.3 1,841,168 + ABZR87_RS08665 0.15 +0.7 1,841,169 - ABZR87_RS08665 0.15 +0.6 1,841,234 + ABZR87_RS08665 0.24 +0.2 1,841,234 + ABZR87_RS08665 0.24 +0.7 1,841,235 - ABZR87_RS08665 0.24 +0.4 1,841,235 - ABZR87_RS08665 0.24 +0.5 1,841,255 + ABZR87_RS08665 0.27 -0.0 1,841,255 + ABZR87_RS08665 0.27 +1.1 1,841,256 - ABZR87_RS08665 0.27 +1.4 1,841,256 - ABZR87_RS08665 0.27 +1.5 1,841,256 - ABZR87_RS08665 0.27 +1.1 1,841,256 - ABZR87_RS08665 0.27 +0.0 1,841,265 + ABZR87_RS08665 0.28 +0.5 1,841,265 + ABZR87_RS08665 0.28 +1.1 1,841,266 - ABZR87_RS08665 0.29 +1.1 1,841,266 - ABZR87_RS08665 0.29 +1.1 1,841,266 - ABZR87_RS08665 0.29 +1.8 1,841,266 - ABZR87_RS08665 0.29 +0.5 1,841,266 - ABZR87_RS08665 0.29 +0.9 1,841,266 - ABZR87_RS08665 0.29 +0.6 1,841,285 - ABZR87_RS08665 0.31 +1.2 1,841,285 - ABZR87_RS08665 0.31 -0.0 1,841,285 - ABZR87_RS08665 0.31 +1.8 1,841,285 - ABZR87_RS08665 0.31 -0.9 1,841,292 + ABZR87_RS08665 0.32 +2.0 1,841,389 - ABZR87_RS08665 0.45 +1.7 1,841,445 + ABZR87_RS08665 0.53 +1.3 1,841,446 - ABZR87_RS08665 0.53 -0.5 1,841,617 - ABZR87_RS08665 0.76 -0.3 1,841,660 + ABZR87_RS08665 0.82 +2.1 1,841,693 + ABZR87_RS08665 0.86 +1.8 1,841,705 - ABZR87_RS08665 0.88 +0.9 1,841,705 - ABZR87_RS08665 0.88 +0.1 1,841,755 - +1.2 1,841,793 + +0.9 1,841,793 + +1.6 1,841,793 + -0.8 1,841,793 + +1.6 1,841,824 + +1.0 1,841,825 - +0.6 1,841,855 + +2.1 1,841,856 - -0.1 1,841,919 + ABZR87_RS08670 0.12 +0.7 1,841,981 + ABZR87_RS08670 0.18 +2.2 1,842,001 - ABZR87_RS08670 0.20 +1.3
Or see this region's nucleotide sequence