Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08320

Experiment: no_plant_soil sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08315 and ABZR87_RS08320 are separated by 33 nucleotidesABZR87_RS08320 and ABZR87_RS08325 are separated by 176 nucleotides ABZR87_RS08315: ABZR87_RS08315 - saccharopine dehydrogenase NADP-binding domain-containing protein, at 1,766,733 to 1,767,977 _RS08315 ABZR87_RS08320: ABZR87_RS08320 - hypothetical protein, at 1,768,011 to 1,768,922 _RS08320 ABZR87_RS08325: ABZR87_RS08325 - SDR family oxidoreductase, at 1,769,099 to 1,770,031 _RS08325 Position (kb) 1768 1769Strain fitness (log2 ratio) -2 -1 0 1 2at 1767.170 kb on - strand, within ABZR87_RS08315at 1767.187 kb on + strand, within ABZR87_RS08315at 1767.444 kb on + strand, within ABZR87_RS08315at 1767.517 kb on + strand, within ABZR87_RS08315at 1767.517 kb on + strand, within ABZR87_RS08315at 1767.517 kb on + strand, within ABZR87_RS08315at 1767.517 kb on + strand, within ABZR87_RS08315at 1767.518 kb on - strand, within ABZR87_RS08315at 1767.518 kb on - strand, within ABZR87_RS08315at 1767.518 kb on - strand, within ABZR87_RS08315at 1767.598 kb on + strand, within ABZR87_RS08315at 1767.598 kb on + strand, within ABZR87_RS08315at 1767.598 kb on + strand, within ABZR87_RS08315at 1767.598 kb on + strand, within ABZR87_RS08315at 1767.598 kb on + strand, within ABZR87_RS08315at 1767.599 kb on - strand, within ABZR87_RS08315at 1767.599 kb on - strand, within ABZR87_RS08315at 1767.599 kb on - strand, within ABZR87_RS08315at 1767.599 kb on - strand, within ABZR87_RS08315at 1767.649 kb on + strand, within ABZR87_RS08315at 1767.649 kb on + strand, within ABZR87_RS08315at 1767.650 kb on - strand, within ABZR87_RS08315at 1767.650 kb on - strand, within ABZR87_RS08315at 1767.650 kb on - strand, within ABZR87_RS08315at 1767.694 kb on + strand, within ABZR87_RS08315at 1767.696 kb on + strand, within ABZR87_RS08315at 1767.696 kb on + strand, within ABZR87_RS08315at 1767.696 kb on + strand, within ABZR87_RS08315at 1767.696 kb on + strand, within ABZR87_RS08315at 1767.696 kb on + strand, within ABZR87_RS08315at 1767.696 kb on + strand, within ABZR87_RS08315at 1767.696 kb on + strand, within ABZR87_RS08315at 1767.697 kb on - strand, within ABZR87_RS08315at 1767.697 kb on - strand, within ABZR87_RS08315at 1767.697 kb on - strand, within ABZR87_RS08315at 1767.697 kb on - strand, within ABZR87_RS08315at 1767.697 kb on - strand, within ABZR87_RS08315at 1767.697 kb on - strand, within ABZR87_RS08315at 1767.703 kb on + strand, within ABZR87_RS08315at 1767.704 kb on - strand, within ABZR87_RS08315at 1767.907 kb on + strandat 1767.908 kb on - strandat 1767.961 kb on + strandat 1767.962 kb on - strandat 1767.962 kb on - strandat 1768.097 kb on + strandat 1768.097 kb on + strandat 1768.097 kb on + strandat 1768.097 kb on + strandat 1768.098 kb on - strandat 1768.406 kb on - strand, within ABZR87_RS08320at 1768.485 kb on + strand, within ABZR87_RS08320at 1768.485 kb on + strand, within ABZR87_RS08320at 1768.486 kb on - strand, within ABZR87_RS08320at 1768.588 kb on + strand, within ABZR87_RS08320at 1768.618 kb on + strand, within ABZR87_RS08320at 1768.717 kb on + strand, within ABZR87_RS08320at 1768.717 kb on + strand, within ABZR87_RS08320at 1768.855 kb on + strandat 1768.856 kb on - strandat 1768.856 kb on - strandat 1768.856 kb on - strandat 1768.907 kb on + strandat 1768.908 kb on - strandat 1768.908 kb on - strandat 1768.928 kb on + strandat 1768.972 kb on + strandat 1768.972 kb on + strandat 1769.034 kb on - strandat 1769.051 kb on + strandat 1769.109 kb on + strandat 1769.109 kb on + strandat 1769.110 kb on - strandat 1769.110 kb on - strandat 1769.155 kb on - strandat 1769.155 kb on - strandat 1769.155 kb on - strandat 1769.252 kb on - strand, within ABZR87_RS08325at 1769.252 kb on - strand, within ABZR87_RS08325at 1769.252 kb on - strand, within ABZR87_RS08325at 1769.291 kb on + strand, within ABZR87_RS08325at 1769.291 kb on + strand, within ABZR87_RS08325at 1769.291 kb on + strand, within ABZR87_RS08325at 1769.291 kb on + strand, within ABZR87_RS08325at 1769.291 kb on + strand, within ABZR87_RS08325at 1769.291 kb on + strand, within ABZR87_RS08325at 1769.292 kb on - strand, within ABZR87_RS08325at 1769.292 kb on - strand, within ABZR87_RS08325at 1769.292 kb on - strand, within ABZR87_RS08325at 1769.292 kb on - strand, within ABZR87_RS08325at 1769.399 kb on + strand, within ABZR87_RS08325at 1769.399 kb on + strand, within ABZR87_RS08325at 1769.400 kb on - strand, within ABZR87_RS08325at 1769.414 kb on + strand, within ABZR87_RS08325at 1769.414 kb on + strand, within ABZR87_RS08325at 1769.414 kb on + strand, within ABZR87_RS08325at 1769.414 kb on + strand, within ABZR87_RS08325at 1769.414 kb on + strand, within ABZR87_RS08325at 1769.414 kb on + strand, within ABZR87_RS08325at 1769.414 kb on + strand, within ABZR87_RS08325at 1769.414 kb on + strand, within ABZR87_RS08325at 1769.414 kb on + strand, within ABZR87_RS08325at 1769.414 kb on + strand, within ABZR87_RS08325at 1769.414 kb on + strand, within ABZR87_RS08325at 1769.414 kb on + strand, within ABZR87_RS08325at 1769.414 kb on + strand, within ABZR87_RS08325at 1769.414 kb on + strand, within ABZR87_RS08325at 1769.414 kb on + strand, within ABZR87_RS08325at 1769.414 kb on + strand, within ABZR87_RS08325at 1769.415 kb on - strand, within ABZR87_RS08325at 1769.415 kb on - strand, within ABZR87_RS08325at 1769.415 kb on - strand, within ABZR87_RS08325at 1769.415 kb on - strand, within ABZR87_RS08325at 1769.415 kb on - strand, within ABZR87_RS08325at 1769.415 kb on - strand, within ABZR87_RS08325at 1769.415 kb on - strand, within ABZR87_RS08325at 1769.415 kb on - strand, within ABZR87_RS08325at 1769.415 kb on - strand, within ABZR87_RS08325at 1769.415 kb on - strand, within ABZR87_RS08325at 1769.415 kb on - strand, within ABZR87_RS08325at 1769.415 kb on - strand, within ABZR87_RS08325at 1769.415 kb on - strand, within ABZR87_RS08325at 1769.415 kb on - strand, within ABZR87_RS08325at 1769.416 kb on + strand, within ABZR87_RS08325at 1769.416 kb on + strand, within ABZR87_RS08325at 1769.416 kb on + strand, within ABZR87_RS08325at 1769.416 kb on + strand, within ABZR87_RS08325at 1769.416 kb on + strand, within ABZR87_RS08325at 1769.416 kb on + strand, within ABZR87_RS08325at 1769.416 kb on + strand, within ABZR87_RS08325at 1769.416 kb on + strand, within ABZR87_RS08325at 1769.416 kb on + strand, within ABZR87_RS08325at 1769.416 kb on + strand, within ABZR87_RS08325at 1769.416 kb on + strand, within ABZR87_RS08325at 1769.416 kb on + strand, within ABZR87_RS08325at 1769.416 kb on + strand, within ABZR87_RS08325at 1769.416 kb on + strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.420 kb on + strand, within ABZR87_RS08325at 1769.420 kb on + strand, within ABZR87_RS08325at 1769.420 kb on + strand, within ABZR87_RS08325at 1769.421 kb on - strand, within ABZR87_RS08325at 1769.421 kb on - strand, within ABZR87_RS08325at 1769.421 kb on - strand, within ABZR87_RS08325at 1769.570 kb on + strand, within ABZR87_RS08325at 1769.570 kb on + strand, within ABZR87_RS08325at 1769.570 kb on + strand, within ABZR87_RS08325at 1769.570 kb on + strand, within ABZR87_RS08325at 1769.570 kb on + strand, within ABZR87_RS08325at 1769.571 kb on - strand, within ABZR87_RS08325at 1769.571 kb on - strand, within ABZR87_RS08325at 1769.571 kb on - strand, within ABZR87_RS08325at 1769.571 kb on - strand, within ABZR87_RS08325at 1769.571 kb on - strand, within ABZR87_RS08325at 1769.571 kb on - strand, within ABZR87_RS08325at 1769.780 kb on + strand, within ABZR87_RS08325at 1769.780 kb on + strand, within ABZR87_RS08325at 1769.780 kb on + strand, within ABZR87_RS08325at 1769.781 kb on - strand, within ABZR87_RS08325at 1769.781 kb on - strand, within ABZR87_RS08325at 1769.781 kb on - strand, within ABZR87_RS08325at 1769.781 kb on - strand, within ABZR87_RS08325at 1769.781 kb on - strand, within ABZR87_RS08325at 1769.781 kb on - strand, within ABZR87_RS08325at 1769.781 kb on - strand, within ABZR87_RS08325at 1769.831 kb on + strand, within ABZR87_RS08325at 1769.831 kb on + strand, within ABZR87_RS08325at 1769.831 kb on + strand, within ABZR87_RS08325at 1769.831 kb on + strand, within ABZR87_RS08325at 1769.832 kb on - strand, within ABZR87_RS08325at 1769.915 kb on + strand, within ABZR87_RS08325

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB
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1,767,170 - ABZR87_RS08315 0.35 -0.5
1,767,187 + ABZR87_RS08315 0.36 -0.3
1,767,444 + ABZR87_RS08315 0.57 -0.5
1,767,517 + ABZR87_RS08315 0.63 +1.4
1,767,517 + ABZR87_RS08315 0.63 -0.4
1,767,517 + ABZR87_RS08315 0.63 -0.8
1,767,517 + ABZR87_RS08315 0.63 +0.6
1,767,518 - ABZR87_RS08315 0.63 -1.6
1,767,518 - ABZR87_RS08315 0.63 +0.7
1,767,518 - ABZR87_RS08315 0.63 +1.3
1,767,598 + ABZR87_RS08315 0.69 -0.6
1,767,598 + ABZR87_RS08315 0.69 +0.6
1,767,598 + ABZR87_RS08315 0.69 -1.3
1,767,598 + ABZR87_RS08315 0.69 -1.2
1,767,598 + ABZR87_RS08315 0.69 -0.5
1,767,599 - ABZR87_RS08315 0.70 -0.7
1,767,599 - ABZR87_RS08315 0.70 +0.4
1,767,599 - ABZR87_RS08315 0.70 +0.4
1,767,599 - ABZR87_RS08315 0.70 -1.5
1,767,649 + ABZR87_RS08315 0.74 -1.5
1,767,649 + ABZR87_RS08315 0.74 +0.9
1,767,650 - ABZR87_RS08315 0.74 -0.9
1,767,650 - ABZR87_RS08315 0.74 +0.2
1,767,650 - ABZR87_RS08315 0.74 +0.2
1,767,694 + ABZR87_RS08315 0.77 -0.1
1,767,696 + ABZR87_RS08315 0.77 -0.5
1,767,696 + ABZR87_RS08315 0.77 +0.6
1,767,696 + ABZR87_RS08315 0.77 -1.2
1,767,696 + ABZR87_RS08315 0.77 -0.1
1,767,696 + ABZR87_RS08315 0.77 -2.2
1,767,696 + ABZR87_RS08315 0.77 +0.1
1,767,696 + ABZR87_RS08315 0.77 -0.4
1,767,697 - ABZR87_RS08315 0.77 -0.7
1,767,697 - ABZR87_RS08315 0.77 -0.6
1,767,697 - ABZR87_RS08315 0.77 -1.9
1,767,697 - ABZR87_RS08315 0.77 -0.5
1,767,697 - ABZR87_RS08315 0.77 -0.9
1,767,697 - ABZR87_RS08315 0.77 -0.3
1,767,703 + ABZR87_RS08315 0.78 -0.2
1,767,704 - ABZR87_RS08315 0.78 -0.0
1,767,907 + +1.3
1,767,908 - -0.3
1,767,961 + -0.3
1,767,962 - -0.8
1,767,962 - +1.5
1,768,097 + -0.4
1,768,097 + +0.6
1,768,097 + -1.4
1,768,097 + +1.3
1,768,098 - -0.4
1,768,406 - ABZR87_RS08320 0.43 -0.6
1,768,485 + ABZR87_RS08320 0.52 -0.8
1,768,485 + ABZR87_RS08320 0.52 +0.1
1,768,486 - ABZR87_RS08320 0.52 -0.5
1,768,588 + ABZR87_RS08320 0.63 -0.7
1,768,618 + ABZR87_RS08320 0.67 +0.6
1,768,717 + ABZR87_RS08320 0.77 +0.3
1,768,717 + ABZR87_RS08320 0.77 -0.7
1,768,855 + -0.7
1,768,856 - -1.1
1,768,856 - -0.9
1,768,856 - -0.7
1,768,907 + -0.9
1,768,908 - -0.1
1,768,908 - +0.1
1,768,928 + +0.1
1,768,972 + -1.3
1,768,972 + -0.9
1,769,034 - +0.5
1,769,051 + -1.7
1,769,109 + +0.1
1,769,109 + -0.3
1,769,110 - +0.3
1,769,110 - +0.3
1,769,155 - +0.3
1,769,155 - +0.4
1,769,155 - +0.1
1,769,252 - ABZR87_RS08325 0.16 -0.3
1,769,252 - ABZR87_RS08325 0.16 +1.0
1,769,252 - ABZR87_RS08325 0.16 -0.2
1,769,291 + ABZR87_RS08325 0.21 -0.5
1,769,291 + ABZR87_RS08325 0.21 +1.0
1,769,291 + ABZR87_RS08325 0.21 +1.6
1,769,291 + ABZR87_RS08325 0.21 -0.5
1,769,291 + ABZR87_RS08325 0.21 +0.2
1,769,291 + ABZR87_RS08325 0.21 -1.3
1,769,292 - ABZR87_RS08325 0.21 -0.3
1,769,292 - ABZR87_RS08325 0.21 +0.0
1,769,292 - ABZR87_RS08325 0.21 -0.8
1,769,292 - ABZR87_RS08325 0.21 -0.6
1,769,399 + ABZR87_RS08325 0.32 -0.2
1,769,399 + ABZR87_RS08325 0.32 -1.0
1,769,400 - ABZR87_RS08325 0.32 +0.6
1,769,414 + ABZR87_RS08325 0.34 +0.1
1,769,414 + ABZR87_RS08325 0.34 +0.0
1,769,414 + ABZR87_RS08325 0.34 -0.1
1,769,414 + ABZR87_RS08325 0.34 +0.3
1,769,414 + ABZR87_RS08325 0.34 -0.9
1,769,414 + ABZR87_RS08325 0.34 +0.9
1,769,414 + ABZR87_RS08325 0.34 +0.9
1,769,414 + ABZR87_RS08325 0.34 -0.9
1,769,414 + ABZR87_RS08325 0.34 +1.1
1,769,414 + ABZR87_RS08325 0.34 +0.6
1,769,414 + ABZR87_RS08325 0.34 -1.2
1,769,414 + ABZR87_RS08325 0.34 +0.4
1,769,414 + ABZR87_RS08325 0.34 +0.1
1,769,414 + ABZR87_RS08325 0.34 -0.0
1,769,414 + ABZR87_RS08325 0.34 -0.9
1,769,414 + ABZR87_RS08325 0.34 -0.4
1,769,415 - ABZR87_RS08325 0.34 -0.5
1,769,415 - ABZR87_RS08325 0.34 +0.1
1,769,415 - ABZR87_RS08325 0.34 -0.7
1,769,415 - ABZR87_RS08325 0.34 +0.6
1,769,415 - ABZR87_RS08325 0.34 +0.3
1,769,415 - ABZR87_RS08325 0.34 -0.2
1,769,415 - ABZR87_RS08325 0.34 -0.6
1,769,415 - ABZR87_RS08325 0.34 -1.1
1,769,415 - ABZR87_RS08325 0.34 +1.8
1,769,415 - ABZR87_RS08325 0.34 -0.4
1,769,415 - ABZR87_RS08325 0.34 -0.8
1,769,415 - ABZR87_RS08325 0.34 -0.5
1,769,415 - ABZR87_RS08325 0.34 +0.4
1,769,415 - ABZR87_RS08325 0.34 +0.1
1,769,416 + ABZR87_RS08325 0.34 -0.7
1,769,416 + ABZR87_RS08325 0.34 -0.9
1,769,416 + ABZR87_RS08325 0.34 +1.2
1,769,416 + ABZR87_RS08325 0.34 +0.6
1,769,416 + ABZR87_RS08325 0.34 -0.1
1,769,416 + ABZR87_RS08325 0.34 -0.6
1,769,416 + ABZR87_RS08325 0.34 +0.9
1,769,416 + ABZR87_RS08325 0.34 -0.4
1,769,416 + ABZR87_RS08325 0.34 -0.2
1,769,416 + ABZR87_RS08325 0.34 +0.5
1,769,416 + ABZR87_RS08325 0.34 +0.9
1,769,416 + ABZR87_RS08325 0.34 +0.3
1,769,416 + ABZR87_RS08325 0.34 +0.2
1,769,416 + ABZR87_RS08325 0.34 -0.2
1,769,417 - ABZR87_RS08325 0.34 -1.4
1,769,417 - ABZR87_RS08325 0.34 -0.8
1,769,417 - ABZR87_RS08325 0.34 +0.7
1,769,417 - ABZR87_RS08325 0.34 +2.5
1,769,417 - ABZR87_RS08325 0.34 +0.2
1,769,417 - ABZR87_RS08325 0.34 +0.1
1,769,417 - ABZR87_RS08325 0.34 -0.8
1,769,417 - ABZR87_RS08325 0.34 -1.1
1,769,417 - ABZR87_RS08325 0.34 -1.0
1,769,417 - ABZR87_RS08325 0.34 +0.1
1,769,417 - ABZR87_RS08325 0.34 -0.6
1,769,417 - ABZR87_RS08325 0.34 -1.5
1,769,417 - ABZR87_RS08325 0.34 +0.2
1,769,417 - ABZR87_RS08325 0.34 -0.1
1,769,417 - ABZR87_RS08325 0.34 -0.4
1,769,417 - ABZR87_RS08325 0.34 +0.3
1,769,417 - ABZR87_RS08325 0.34 +1.0
1,769,417 - ABZR87_RS08325 0.34 -0.3
1,769,417 - ABZR87_RS08325 0.34 +0.7
1,769,420 + ABZR87_RS08325 0.34 -0.2
1,769,420 + ABZR87_RS08325 0.34 +0.1
1,769,420 + ABZR87_RS08325 0.34 +1.4
1,769,421 - ABZR87_RS08325 0.35 -0.1
1,769,421 - ABZR87_RS08325 0.35 +0.4
1,769,421 - ABZR87_RS08325 0.35 -0.6
1,769,570 + ABZR87_RS08325 0.50 +0.0
1,769,570 + ABZR87_RS08325 0.50 +0.6
1,769,570 + ABZR87_RS08325 0.50 +0.5
1,769,570 + ABZR87_RS08325 0.50 -0.7
1,769,570 + ABZR87_RS08325 0.50 +0.1
1,769,571 - ABZR87_RS08325 0.51 -0.3
1,769,571 - ABZR87_RS08325 0.51 -0.0
1,769,571 - ABZR87_RS08325 0.51 -0.1
1,769,571 - ABZR87_RS08325 0.51 -0.5
1,769,571 - ABZR87_RS08325 0.51 +0.1
1,769,571 - ABZR87_RS08325 0.51 -0.2
1,769,780 + ABZR87_RS08325 0.73 -0.4
1,769,780 + ABZR87_RS08325 0.73 -0.1
1,769,780 + ABZR87_RS08325 0.73 -0.3
1,769,781 - ABZR87_RS08325 0.73 -0.4
1,769,781 - ABZR87_RS08325 0.73 -0.4
1,769,781 - ABZR87_RS08325 0.73 +0.2
1,769,781 - ABZR87_RS08325 0.73 +0.5
1,769,781 - ABZR87_RS08325 0.73 +0.6
1,769,781 - ABZR87_RS08325 0.73 -0.2
1,769,781 - ABZR87_RS08325 0.73 -0.2
1,769,831 + ABZR87_RS08325 0.78 +0.2
1,769,831 + ABZR87_RS08325 0.78 -0.9
1,769,831 + ABZR87_RS08325 0.78 -0.3
1,769,831 + ABZR87_RS08325 0.78 +0.3
1,769,832 - ABZR87_RS08325 0.79 +0.3
1,769,915 + ABZR87_RS08325 0.87 +0.5

Or see this region's nucleotide sequence