Experiment: no_plant_soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS07505 and ABZR87_RS07510 are separated by 15 nucleotides ABZR87_RS07510 and ABZR87_RS07515 are separated by 151 nucleotides
ABZR87_RS07505: ABZR87_RS07505 - ABC transporter ATP-binding protein/permease, at 1,593,412 to 1,595,253
_RS07505
ABZR87_RS07510: ABZR87_RS07510 - LysR family transcriptional regulator, at 1,595,269 to 1,596,213
_RS07510
ABZR87_RS07515: ABZR87_RS07515 - Glu/Leu/Phe/Val dehydrogenase, at 1,596,365 to 1,597,666
_RS07515
Position (kb) 1595
1596
1597 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1594.342 kb on + strand, within ABZR87_RS07505 at 1594.342 kb on + strand, within ABZR87_RS07505 at 1594.343 kb on - strand, within ABZR87_RS07505 at 1594.343 kb on - strand, within ABZR87_RS07505 at 1594.372 kb on + strand, within ABZR87_RS07505 at 1594.517 kb on - strand, within ABZR87_RS07505 at 1594.639 kb on + strand, within ABZR87_RS07505 at 1594.640 kb on - strand, within ABZR87_RS07505 at 1594.762 kb on + strand, within ABZR87_RS07505 at 1594.763 kb on - strand, within ABZR87_RS07505 at 1594.763 kb on - strand, within ABZR87_RS07505 at 1594.765 kb on + strand, within ABZR87_RS07505 at 1594.765 kb on + strand, within ABZR87_RS07505 at 1594.765 kb on + strand, within ABZR87_RS07505 at 1594.765 kb on + strand, within ABZR87_RS07505 at 1594.765 kb on + strand, within ABZR87_RS07505 at 1594.765 kb on + strand, within ABZR87_RS07505 at 1594.765 kb on + strand, within ABZR87_RS07505 at 1594.766 kb on - strand, within ABZR87_RS07505 at 1594.766 kb on - strand, within ABZR87_RS07505 at 1594.766 kb on - strand, within ABZR87_RS07505 at 1594.766 kb on - strand, within ABZR87_RS07505 at 1594.867 kb on + strand, within ABZR87_RS07505 at 1595.173 kb on + strand at 1595.426 kb on - strand, within ABZR87_RS07510 at 1595.461 kb on + strand, within ABZR87_RS07510 at 1595.461 kb on + strand, within ABZR87_RS07510 at 1595.565 kb on + strand, within ABZR87_RS07510 at 1595.707 kb on + strand, within ABZR87_RS07510 at 1595.708 kb on - strand, within ABZR87_RS07510 at 1595.749 kb on + strand, within ABZR87_RS07510 at 1595.866 kb on + strand, within ABZR87_RS07510 at 1595.866 kb on + strand, within ABZR87_RS07510 at 1595.866 kb on + strand, within ABZR87_RS07510 at 1595.866 kb on + strand, within ABZR87_RS07510 at 1595.866 kb on + strand, within ABZR87_RS07510 at 1595.868 kb on + strand, within ABZR87_RS07510 at 1595.869 kb on - strand, within ABZR87_RS07510 at 1596.221 kb on - strand at 1596.225 kb on + strand at 1596.226 kb on - strand at 1596.226 kb on - strand at 1596.337 kb on + strand at 1596.899 kb on + strand, within ABZR87_RS07515
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB remove 1,594,342 + ABZR87_RS07505 0.50 +0.6 1,594,342 + ABZR87_RS07505 0.50 -0.3 1,594,343 - ABZR87_RS07505 0.51 -0.2 1,594,343 - ABZR87_RS07505 0.51 +0.4 1,594,372 + ABZR87_RS07505 0.52 -0.3 1,594,517 - ABZR87_RS07505 0.60 -1.4 1,594,639 + ABZR87_RS07505 0.67 -0.5 1,594,640 - ABZR87_RS07505 0.67 -0.5 1,594,762 + ABZR87_RS07505 0.73 +0.3 1,594,763 - ABZR87_RS07505 0.73 -0.9 1,594,763 - ABZR87_RS07505 0.73 +0.2 1,594,765 + ABZR87_RS07505 0.73 +0.3 1,594,765 + ABZR87_RS07505 0.73 +1.3 1,594,765 + ABZR87_RS07505 0.73 -0.2 1,594,765 + ABZR87_RS07505 0.73 +0.3 1,594,765 + ABZR87_RS07505 0.73 -0.0 1,594,765 + ABZR87_RS07505 0.73 -0.4 1,594,765 + ABZR87_RS07505 0.73 -0.2 1,594,766 - ABZR87_RS07505 0.74 -0.6 1,594,766 - ABZR87_RS07505 0.74 +0.4 1,594,766 - ABZR87_RS07505 0.74 -0.1 1,594,766 - ABZR87_RS07505 0.74 -1.0 1,594,867 + ABZR87_RS07505 0.79 -0.7 1,595,173 + +0.7 1,595,426 - ABZR87_RS07510 0.17 -1.9 1,595,461 + ABZR87_RS07510 0.20 -2.9 1,595,461 + ABZR87_RS07510 0.20 -0.0 1,595,565 + ABZR87_RS07510 0.31 -0.9 1,595,707 + ABZR87_RS07510 0.46 -2.0 1,595,708 - ABZR87_RS07510 0.46 +1.0 1,595,749 + ABZR87_RS07510 0.51 -1.9 1,595,866 + ABZR87_RS07510 0.63 -0.2 1,595,866 + ABZR87_RS07510 0.63 -2.9 1,595,866 + ABZR87_RS07510 0.63 -1.2 1,595,866 + ABZR87_RS07510 0.63 -2.4 1,595,866 + ABZR87_RS07510 0.63 -1.9 1,595,868 + ABZR87_RS07510 0.63 -1.9 1,595,869 - ABZR87_RS07510 0.63 +0.4 1,596,221 - -0.1 1,596,225 + +0.1 1,596,226 - +2.0 1,596,226 - +2.0 1,596,337 + -0.5 1,596,899 + ABZR87_RS07515 0.41 -0.2
Or see this region's nucleotide sequence