Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07080

Experiment: no_plant_soil sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07070 and ABZR87_RS07075 are separated by 59 nucleotidesABZR87_RS07075 and ABZR87_RS07080 are separated by 4 nucleotidesABZR87_RS07080 and ABZR87_RS07085 are separated by 15 nucleotides ABZR87_RS07070: ABZR87_RS07070 - lipopolysaccharide transport periplasmic protein LptA, at 1,492,730 to 1,493,317 _RS07070 ABZR87_RS07075: ABZR87_RS07075 - LPS export ABC transporter periplasmic protein LptC, at 1,493,377 to 1,494,009 _RS07075 ABZR87_RS07080: ABZR87_RS07080 - HAD family hydrolase, at 1,494,014 to 1,494,610 _RS07080 ABZR87_RS07085: ABZR87_RS07085 - KpsF/GutQ family sugar-phosphate isomerase, at 1,494,626 to 1,495,609 _RS07085 Position (kb) 1494 1495Strain fitness (log2 ratio) -2 -1 0 1at 1493.378 kb on + strandat 1494.061 kb on - strandat 1494.136 kb on - strand, within ABZR87_RS07080at 1494.136 kb on - strand, within ABZR87_RS07080at 1494.136 kb on - strand, within ABZR87_RS07080at 1494.136 kb on - strand, within ABZR87_RS07080at 1494.136 kb on - strand, within ABZR87_RS07080at 1494.136 kb on - strand, within ABZR87_RS07080at 1494.235 kb on - strand, within ABZR87_RS07080at 1494.235 kb on - strand, within ABZR87_RS07080at 1494.235 kb on - strand, within ABZR87_RS07080at 1494.313 kb on - strand, within ABZR87_RS07080at 1494.313 kb on - strand, within ABZR87_RS07080at 1494.313 kb on - strand, within ABZR87_RS07080at 1494.313 kb on - strand, within ABZR87_RS07080at 1495.605 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB
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1,493,378 + +1.2
1,494,061 - +0.7
1,494,136 - ABZR87_RS07080 0.20 +0.0
1,494,136 - ABZR87_RS07080 0.20 +0.8
1,494,136 - ABZR87_RS07080 0.20 +1.6
1,494,136 - ABZR87_RS07080 0.20 +0.6
1,494,136 - ABZR87_RS07080 0.20 -2.0
1,494,136 - ABZR87_RS07080 0.20 +0.2
1,494,235 - ABZR87_RS07080 0.37 -0.7
1,494,235 - ABZR87_RS07080 0.37 -1.7
1,494,235 - ABZR87_RS07080 0.37 -0.4
1,494,313 - ABZR87_RS07080 0.50 +0.1
1,494,313 - ABZR87_RS07080 0.50 +0.4
1,494,313 - ABZR87_RS07080 0.50 +0.4
1,494,313 - ABZR87_RS07080 0.50 +1.7
1,495,605 - -0.5

Or see this region's nucleotide sequence