Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06835

Experiment: no_plant_soil sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06825 and ABZR87_RS06830 are separated by 69 nucleotidesABZR87_RS06830 and ABZR87_RS06835 are separated by 52 nucleotidesABZR87_RS06835 and ABZR87_RS06840 are separated by 3 nucleotides ABZR87_RS06825: ABZR87_RS06825 - twin transmembrane helix small protein, at 1,446,069 to 1,446,278 _RS06825 ABZR87_RS06830: ABZR87_RS06830 - SURF1 family protein, at 1,446,348 to 1,447,118 _RS06830 ABZR87_RS06835: ABZR87_RS06835 - cytochrome c oxidase subunit I, at 1,447,171 to 1,447,827 _RS06835 ABZR87_RS06840: ABZR87_RS06840 - COX15/CtaA family protein, at 1,447,831 to 1,448,922 _RS06840 Position (kb) 1447 1448Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1446.311 kb on - strandat 1446.328 kb on + strandat 1446.555 kb on + strand, within ABZR87_RS06830at 1446.555 kb on + strand, within ABZR87_RS06830at 1446.637 kb on + strand, within ABZR87_RS06830at 1446.638 kb on - strand, within ABZR87_RS06830at 1446.759 kb on + strand, within ABZR87_RS06830at 1446.760 kb on - strand, within ABZR87_RS06830at 1446.760 kb on - strand, within ABZR87_RS06830at 1446.824 kb on + strand, within ABZR87_RS06830at 1446.824 kb on + strand, within ABZR87_RS06830at 1446.824 kb on + strand, within ABZR87_RS06830at 1446.825 kb on - strand, within ABZR87_RS06830at 1446.869 kb on + strand, within ABZR87_RS06830at 1446.870 kb on - strand, within ABZR87_RS06830at 1446.878 kb on + strand, within ABZR87_RS06830at 1446.878 kb on + strand, within ABZR87_RS06830at 1446.879 kb on - strand, within ABZR87_RS06830at 1447.008 kb on + strand, within ABZR87_RS06830at 1447.008 kb on + strand, within ABZR87_RS06830at 1447.008 kb on + strand, within ABZR87_RS06830at 1447.009 kb on - strand, within ABZR87_RS06830at 1447.009 kb on - strand, within ABZR87_RS06830at 1447.009 kb on - strand, within ABZR87_RS06830at 1447.009 kb on - strand, within ABZR87_RS06830at 1447.009 kb on - strand, within ABZR87_RS06830at 1447.009 kb on - strand, within ABZR87_RS06830at 1447.068 kb on + strandat 1447.140 kb on + strandat 1447.140 kb on + strandat 1447.141 kb on - strandat 1447.141 kb on - strandat 1447.141 kb on - strandat 1447.313 kb on - strand, within ABZR87_RS06835at 1447.313 kb on - strand, within ABZR87_RS06835at 1447.321 kb on + strand, within ABZR87_RS06835at 1447.321 kb on + strand, within ABZR87_RS06835at 1447.321 kb on + strand, within ABZR87_RS06835at 1447.321 kb on + strand, within ABZR87_RS06835at 1447.321 kb on + strand, within ABZR87_RS06835at 1447.322 kb on - strand, within ABZR87_RS06835at 1447.322 kb on - strand, within ABZR87_RS06835at 1447.322 kb on - strand, within ABZR87_RS06835at 1447.322 kb on - strand, within ABZR87_RS06835at 1447.322 kb on - strand, within ABZR87_RS06835at 1447.324 kb on + strand, within ABZR87_RS06835at 1447.324 kb on + strand, within ABZR87_RS06835at 1447.324 kb on + strand, within ABZR87_RS06835at 1447.325 kb on - strand, within ABZR87_RS06835at 1447.325 kb on - strand, within ABZR87_RS06835at 1447.325 kb on - strand, within ABZR87_RS06835at 1447.357 kb on + strand, within ABZR87_RS06835at 1447.357 kb on + strand, within ABZR87_RS06835at 1447.358 kb on - strand, within ABZR87_RS06835at 1447.358 kb on - strand, within ABZR87_RS06835at 1447.621 kb on + strand, within ABZR87_RS06835at 1447.621 kb on + strand, within ABZR87_RS06835at 1447.621 kb on + strand, within ABZR87_RS06835at 1447.621 kb on + strand, within ABZR87_RS06835at 1447.622 kb on - strand, within ABZR87_RS06835at 1447.622 kb on - strand, within ABZR87_RS06835at 1447.634 kb on - strand, within ABZR87_RS06835at 1447.810 kb on + strandat 1447.811 kb on - strandat 1447.825 kb on + strandat 1447.885 kb on + strandat 1447.885 kb on + strandat 1447.885 kb on + strandat 1447.885 kb on + strandat 1447.885 kb on + strandat 1447.885 kb on + strandat 1447.885 kb on + strandat 1447.885 kb on + strandat 1447.885 kb on + strandat 1447.885 kb on + strandat 1447.885 kb on + strandat 1447.886 kb on - strandat 1447.886 kb on - strandat 1447.886 kb on - strandat 1447.886 kb on - strandat 1447.886 kb on - strandat 1447.886 kb on - strandat 1447.915 kb on + strandat 1447.915 kb on + strandat 1448.137 kb on + strand, within ABZR87_RS06840at 1448.138 kb on - strand, within ABZR87_RS06840at 1448.224 kb on + strand, within ABZR87_RS06840at 1448.225 kb on - strand, within ABZR87_RS06840at 1448.225 kb on - strand, within ABZR87_RS06840at 1448.249 kb on + strand, within ABZR87_RS06840at 1448.249 kb on + strand, within ABZR87_RS06840at 1448.249 kb on + strand, within ABZR87_RS06840at 1448.249 kb on + strand, within ABZR87_RS06840at 1448.249 kb on + strand, within ABZR87_RS06840at 1448.250 kb on - strand, within ABZR87_RS06840at 1448.250 kb on - strand, within ABZR87_RS06840at 1448.250 kb on - strand, within ABZR87_RS06840at 1448.250 kb on - strand, within ABZR87_RS06840at 1448.250 kb on - strand, within ABZR87_RS06840at 1448.250 kb on - strand, within ABZR87_RS06840at 1448.250 kb on - strand, within ABZR87_RS06840at 1448.485 kb on + strand, within ABZR87_RS06840at 1448.485 kb on + strand, within ABZR87_RS06840at 1448.485 kb on + strand, within ABZR87_RS06840at 1448.486 kb on - strand, within ABZR87_RS06840at 1448.486 kb on - strand, within ABZR87_RS06840at 1448.486 kb on - strand, within ABZR87_RS06840at 1448.486 kb on - strand, within ABZR87_RS06840at 1448.486 kb on - strand, within ABZR87_RS06840at 1448.671 kb on + strand, within ABZR87_RS06840at 1448.672 kb on - strand, within ABZR87_RS06840at 1448.672 kb on - strand, within ABZR87_RS06840at 1448.672 kb on - strand, within ABZR87_RS06840

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB
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1,446,311 - +1.0
1,446,328 + +0.8
1,446,555 + ABZR87_RS06830 0.27 -1.5
1,446,555 + ABZR87_RS06830 0.27 +0.1
1,446,637 + ABZR87_RS06830 0.37 -0.8
1,446,638 - ABZR87_RS06830 0.38 -0.3
1,446,759 + ABZR87_RS06830 0.53 +0.1
1,446,760 - ABZR87_RS06830 0.53 +0.8
1,446,760 - ABZR87_RS06830 0.53 -0.2
1,446,824 + ABZR87_RS06830 0.62 -0.3
1,446,824 + ABZR87_RS06830 0.62 +0.1
1,446,824 + ABZR87_RS06830 0.62 +0.7
1,446,825 - ABZR87_RS06830 0.62 -0.4
1,446,869 + ABZR87_RS06830 0.68 -1.0
1,446,870 - ABZR87_RS06830 0.68 -1.2
1,446,878 + ABZR87_RS06830 0.69 +0.3
1,446,878 + ABZR87_RS06830 0.69 -0.4
1,446,879 - ABZR87_RS06830 0.69 +0.0
1,447,008 + ABZR87_RS06830 0.86 -0.4
1,447,008 + ABZR87_RS06830 0.86 -0.6
1,447,008 + ABZR87_RS06830 0.86 -0.9
1,447,009 - ABZR87_RS06830 0.86 -0.5
1,447,009 - ABZR87_RS06830 0.86 -0.4
1,447,009 - ABZR87_RS06830 0.86 -2.0
1,447,009 - ABZR87_RS06830 0.86 -2.1
1,447,009 - ABZR87_RS06830 0.86 -0.7
1,447,009 - ABZR87_RS06830 0.86 +0.1
1,447,068 + -0.2
1,447,140 + +1.3
1,447,140 + +0.7
1,447,141 - +0.0
1,447,141 - -0.6
1,447,141 - -0.5
1,447,313 - ABZR87_RS06835 0.22 -2.9
1,447,313 - ABZR87_RS06835 0.22 -1.3
1,447,321 + ABZR87_RS06835 0.23 -0.9
1,447,321 + ABZR87_RS06835 0.23 -0.9
1,447,321 + ABZR87_RS06835 0.23 -0.0
1,447,321 + ABZR87_RS06835 0.23 -1.0
1,447,321 + ABZR87_RS06835 0.23 +0.9
1,447,322 - ABZR87_RS06835 0.23 -0.5
1,447,322 - ABZR87_RS06835 0.23 -0.1
1,447,322 - ABZR87_RS06835 0.23 -2.3
1,447,322 - ABZR87_RS06835 0.23 -1.4
1,447,322 - ABZR87_RS06835 0.23 -0.4
1,447,324 + ABZR87_RS06835 0.23 -2.5
1,447,324 + ABZR87_RS06835 0.23 -0.5
1,447,324 + ABZR87_RS06835 0.23 -0.4
1,447,325 - ABZR87_RS06835 0.23 +0.1
1,447,325 - ABZR87_RS06835 0.23 -0.2
1,447,325 - ABZR87_RS06835 0.23 -2.0
1,447,357 + ABZR87_RS06835 0.28 +0.8
1,447,357 + ABZR87_RS06835 0.28 +0.2
1,447,358 - ABZR87_RS06835 0.28 +1.3
1,447,358 - ABZR87_RS06835 0.28 -1.7
1,447,621 + ABZR87_RS06835 0.68 -2.6
1,447,621 + ABZR87_RS06835 0.68 -0.0
1,447,621 + ABZR87_RS06835 0.68 +1.0
1,447,621 + ABZR87_RS06835 0.68 -0.1
1,447,622 - ABZR87_RS06835 0.69 -2.3
1,447,622 - ABZR87_RS06835 0.69 -1.3
1,447,634 - ABZR87_RS06835 0.70 -1.5
1,447,810 + -1.4
1,447,811 - -0.8
1,447,825 + -1.9
1,447,885 + -3.0
1,447,885 + -1.9
1,447,885 + -1.4
1,447,885 + -0.4
1,447,885 + -2.7
1,447,885 + -2.2
1,447,885 + -0.0
1,447,885 + -2.7
1,447,885 + -2.3
1,447,885 + -2.3
1,447,885 + -1.3
1,447,886 - -1.5
1,447,886 - -1.6
1,447,886 - -2.5
1,447,886 - -3.7
1,447,886 - -0.9
1,447,886 - -4.2
1,447,915 + -0.7
1,447,915 + -0.7
1,448,137 + ABZR87_RS06840 0.28 +0.7
1,448,138 - ABZR87_RS06840 0.28 -2.7
1,448,224 + ABZR87_RS06840 0.36 -3.5
1,448,225 - ABZR87_RS06840 0.36 +0.8
1,448,225 - ABZR87_RS06840 0.36 -1.3
1,448,249 + ABZR87_RS06840 0.38 -1.5
1,448,249 + ABZR87_RS06840 0.38 +1.4
1,448,249 + ABZR87_RS06840 0.38 -0.3
1,448,249 + ABZR87_RS06840 0.38 -3.1
1,448,249 + ABZR87_RS06840 0.38 +0.6
1,448,250 - ABZR87_RS06840 0.38 -1.4
1,448,250 - ABZR87_RS06840 0.38 -2.1
1,448,250 - ABZR87_RS06840 0.38 +0.4
1,448,250 - ABZR87_RS06840 0.38 -0.6
1,448,250 - ABZR87_RS06840 0.38 -0.8
1,448,250 - ABZR87_RS06840 0.38 -2.1
1,448,250 - ABZR87_RS06840 0.38 -1.9
1,448,485 + ABZR87_RS06840 0.60 -2.5
1,448,485 + ABZR87_RS06840 0.60 -1.1
1,448,485 + ABZR87_RS06840 0.60 -2.4
1,448,486 - ABZR87_RS06840 0.60 -3.5
1,448,486 - ABZR87_RS06840 0.60 -1.9
1,448,486 - ABZR87_RS06840 0.60 -3.0
1,448,486 - ABZR87_RS06840 0.60 +0.2
1,448,486 - ABZR87_RS06840 0.60 -3.2
1,448,671 + ABZR87_RS06840 0.77 -1.2
1,448,672 - ABZR87_RS06840 0.77 -2.2
1,448,672 - ABZR87_RS06840 0.77 -1.6
1,448,672 - ABZR87_RS06840 0.77 -1.6

Or see this region's nucleotide sequence