Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06295

Experiment: no_plant_soil sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06285 and ABZR87_RS06290 overlap by 1 nucleotidesABZR87_RS06290 and ABZR87_RS06295 are separated by 27 nucleotidesABZR87_RS06295 and ABZR87_RS06300 are separated by 10 nucleotidesABZR87_RS06300 and ABZR87_RS06305 are separated by 9 nucleotides ABZR87_RS06285: ABZR87_RS06285 - YchJ family protein, at 1,343,101 to 1,343,541 _RS06285 ABZR87_RS06290: ABZR87_RS06290 - HAD family phosphatase, at 1,343,541 to 1,344,239 _RS06290 ABZR87_RS06295: ABZR87_RS06295 - acyl-CoA dehydrogenase family protein, at 1,344,267 to 1,345,397 _RS06295 ABZR87_RS06300: ABZR87_RS06300 - SDR family oxidoreductase, at 1,345,408 to 1,346,121 _RS06300 ABZR87_RS06305: ABZR87_RS06305 - acetyl-CoA C-acetyltransferase, at 1,346,131 to 1,347,321 _RS06305 Position (kb) 1344 1345 1346Strain fitness (log2 ratio) -2 -1 0 1 2at 1343.372 kb on + strand, within ABZR87_RS06285at 1343.372 kb on + strand, within ABZR87_RS06285at 1343.373 kb on - strand, within ABZR87_RS06285at 1343.393 kb on + strand, within ABZR87_RS06285at 1343.393 kb on + strand, within ABZR87_RS06285at 1343.393 kb on + strand, within ABZR87_RS06285at 1343.393 kb on + strand, within ABZR87_RS06285at 1343.393 kb on + strand, within ABZR87_RS06285at 1343.394 kb on - strand, within ABZR87_RS06285at 1343.394 kb on - strand, within ABZR87_RS06285at 1343.394 kb on - strand, within ABZR87_RS06285at 1343.394 kb on - strand, within ABZR87_RS06285at 1343.394 kb on - strand, within ABZR87_RS06285at 1343.403 kb on - strand, within ABZR87_RS06285at 1343.477 kb on + strand, within ABZR87_RS06285at 1343.641 kb on + strand, within ABZR87_RS06290at 1343.752 kb on + strand, within ABZR87_RS06290at 1343.752 kb on + strand, within ABZR87_RS06290at 1343.752 kb on + strand, within ABZR87_RS06290at 1343.752 kb on + strand, within ABZR87_RS06290at 1343.752 kb on + strand, within ABZR87_RS06290at 1343.753 kb on - strand, within ABZR87_RS06290at 1343.753 kb on - strand, within ABZR87_RS06290at 1343.753 kb on - strand, within ABZR87_RS06290at 1343.753 kb on - strand, within ABZR87_RS06290at 1343.753 kb on - strand, within ABZR87_RS06290at 1343.920 kb on + strand, within ABZR87_RS06290at 1344.269 kb on - strandat 1344.319 kb on + strandat 1344.319 kb on + strandat 1344.319 kb on + strandat 1344.320 kb on - strandat 1344.320 kb on - strandat 1344.346 kb on + strandat 1344.613 kb on + strand, within ABZR87_RS06295at 1344.710 kb on - strand, within ABZR87_RS06295at 1344.710 kb on - strand, within ABZR87_RS06295at 1344.827 kb on - strand, within ABZR87_RS06295at 1345.208 kb on - strand, within ABZR87_RS06295at 1345.208 kb on - strand, within ABZR87_RS06295at 1345.252 kb on + strand, within ABZR87_RS06295at 1345.433 kb on + strandat 1345.433 kb on + strandat 1345.433 kb on + strandat 1345.433 kb on + strandat 1345.434 kb on - strandat 1345.856 kb on + strand, within ABZR87_RS06300at 1345.857 kb on - strand, within ABZR87_RS06300at 1345.857 kb on - strand, within ABZR87_RS06300at 1345.857 kb on - strand, within ABZR87_RS06300at 1345.857 kb on - strand, within ABZR87_RS06300at 1345.872 kb on - strand, within ABZR87_RS06300at 1345.872 kb on - strand, within ABZR87_RS06300at 1346.132 kb on + strandat 1346.133 kb on - strandat 1346.133 kb on - strandat 1346.133 kb on - strandat 1346.135 kb on + strandat 1346.135 kb on + strandat 1346.135 kb on + strandat 1346.136 kb on - strandat 1346.136 kb on - strandat 1346.136 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB
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1,343,372 + ABZR87_RS06285 0.61 -0.5
1,343,372 + ABZR87_RS06285 0.61 -0.1
1,343,373 - ABZR87_RS06285 0.62 -1.5
1,343,393 + ABZR87_RS06285 0.66 -0.9
1,343,393 + ABZR87_RS06285 0.66 -0.3
1,343,393 + ABZR87_RS06285 0.66 +1.3
1,343,393 + ABZR87_RS06285 0.66 +0.4
1,343,393 + ABZR87_RS06285 0.66 -0.4
1,343,394 - ABZR87_RS06285 0.66 +1.9
1,343,394 - ABZR87_RS06285 0.66 +0.1
1,343,394 - ABZR87_RS06285 0.66 -0.3
1,343,394 - ABZR87_RS06285 0.66 +0.5
1,343,394 - ABZR87_RS06285 0.66 -0.9
1,343,403 - ABZR87_RS06285 0.68 -1.3
1,343,477 + ABZR87_RS06285 0.85 +1.0
1,343,641 + ABZR87_RS06290 0.14 -0.8
1,343,752 + ABZR87_RS06290 0.30 +0.3
1,343,752 + ABZR87_RS06290 0.30 +0.4
1,343,752 + ABZR87_RS06290 0.30 -1.2
1,343,752 + ABZR87_RS06290 0.30 +0.9
1,343,752 + ABZR87_RS06290 0.30 -1.4
1,343,753 - ABZR87_RS06290 0.30 +0.6
1,343,753 - ABZR87_RS06290 0.30 +0.4
1,343,753 - ABZR87_RS06290 0.30 +1.0
1,343,753 - ABZR87_RS06290 0.30 -0.3
1,343,753 - ABZR87_RS06290 0.30 -1.8
1,343,920 + ABZR87_RS06290 0.54 +0.2
1,344,269 - +0.3
1,344,319 + +0.5
1,344,319 + -0.3
1,344,319 + -0.3
1,344,320 - +1.1
1,344,320 - +0.3
1,344,346 + +1.6
1,344,613 + ABZR87_RS06295 0.31 +1.1
1,344,710 - ABZR87_RS06295 0.39 -0.4
1,344,710 - ABZR87_RS06295 0.39 -2.3
1,344,827 - ABZR87_RS06295 0.50 -2.4
1,345,208 - ABZR87_RS06295 0.83 -1.5
1,345,208 - ABZR87_RS06295 0.83 +0.3
1,345,252 + ABZR87_RS06295 0.87 -1.4
1,345,433 + +0.0
1,345,433 + -0.2
1,345,433 + +0.2
1,345,433 + -1.8
1,345,434 - +1.7
1,345,856 + ABZR87_RS06300 0.63 -0.1
1,345,857 - ABZR87_RS06300 0.63 -0.2
1,345,857 - ABZR87_RS06300 0.63 -0.1
1,345,857 - ABZR87_RS06300 0.63 +2.2
1,345,857 - ABZR87_RS06300 0.63 +0.9
1,345,872 - ABZR87_RS06300 0.65 +1.4
1,345,872 - ABZR87_RS06300 0.65 +1.1
1,346,132 + -0.2
1,346,133 - -1.8
1,346,133 - +1.2
1,346,133 - +0.7
1,346,135 + -0.4
1,346,135 + -0.6
1,346,135 + -0.2
1,346,136 - -1.1
1,346,136 - +0.1
1,346,136 - -0.5

Or see this region's nucleotide sequence