Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05455

Experiment: no_plant_soil sample 3; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS05450 and ABZR87_RS05455 are separated by 27 nucleotidesABZR87_RS05455 and ABZR87_RS05460 are separated by 67 nucleotidesABZR87_RS05460 and ABZR87_RS05465 overlap by 4 nucleotides ABZR87_RS05450: ABZR87_RS05450 - FadR/GntR family transcriptional regulator, at 1,159,452 to 1,160,216 _RS05450 ABZR87_RS05455: ABZR87_RS05455 - transporter substrate-binding domain-containing protein, at 1,160,244 to 1,161,071 _RS05455 ABZR87_RS05460: ABZR87_RS05460 - amino acid ABC transporter permease, at 1,161,139 to 1,161,873 _RS05460 ABZR87_RS05465: ABZR87_RS05465 - amino acid ABC transporter permease, at 1,161,870 to 1,162,523 _RS05465 Position (kb) 1160 1161 1162Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1159.353 kb on + strandat 1159.373 kb on + strandat 1159.373 kb on + strandat 1159.398 kb on + strandat 1159.398 kb on + strandat 1159.398 kb on + strandat 1159.399 kb on - strandat 1159.399 kb on - strandat 1159.399 kb on - strandat 1159.399 kb on - strandat 1159.399 kb on - strandat 1160.463 kb on + strand, within ABZR87_RS05455at 1160.463 kb on + strand, within ABZR87_RS05455at 1160.463 kb on + strand, within ABZR87_RS05455at 1160.463 kb on + strand, within ABZR87_RS05455at 1160.463 kb on + strand, within ABZR87_RS05455at 1160.464 kb on - strand, within ABZR87_RS05455at 1160.464 kb on - strand, within ABZR87_RS05455at 1160.464 kb on - strand, within ABZR87_RS05455at 1160.464 kb on - strand, within ABZR87_RS05455at 1160.543 kb on + strand, within ABZR87_RS05455at 1160.543 kb on + strand, within ABZR87_RS05455at 1160.595 kb on - strand, within ABZR87_RS05455at 1160.595 kb on - strand, within ABZR87_RS05455at 1160.661 kb on + strand, within ABZR87_RS05455at 1160.661 kb on + strand, within ABZR87_RS05455at 1160.661 kb on + strand, within ABZR87_RS05455at 1160.661 kb on + strand, within ABZR87_RS05455at 1160.661 kb on + strand, within ABZR87_RS05455at 1160.662 kb on - strand, within ABZR87_RS05455at 1160.662 kb on - strand, within ABZR87_RS05455at 1160.791 kb on - strand, within ABZR87_RS05455at 1160.791 kb on - strand, within ABZR87_RS05455at 1160.820 kb on + strand, within ABZR87_RS05455at 1160.820 kb on + strand, within ABZR87_RS05455at 1160.820 kb on + strand, within ABZR87_RS05455at 1160.820 kb on + strand, within ABZR87_RS05455at 1160.821 kb on - strand, within ABZR87_RS05455at 1160.821 kb on - strand, within ABZR87_RS05455at 1160.821 kb on - strand, within ABZR87_RS05455at 1160.821 kb on - strand, within ABZR87_RS05455at 1160.821 kb on - strand, within ABZR87_RS05455at 1160.821 kb on - strand, within ABZR87_RS05455at 1160.821 kb on - strand, within ABZR87_RS05455at 1160.821 kb on - strand, within ABZR87_RS05455at 1160.936 kb on + strand, within ABZR87_RS05455at 1160.937 kb on + strand, within ABZR87_RS05455at 1160.937 kb on + strand, within ABZR87_RS05455at 1160.937 kb on + strand, within ABZR87_RS05455at 1160.937 kb on + strand, within ABZR87_RS05455at 1160.937 kb on + strand, within ABZR87_RS05455at 1160.937 kb on + strand, within ABZR87_RS05455at 1160.937 kb on + strand, within ABZR87_RS05455at 1160.937 kb on + strand, within ABZR87_RS05455at 1160.937 kb on + strand, within ABZR87_RS05455at 1160.937 kb on + strand, within ABZR87_RS05455at 1160.937 kb on + strand, within ABZR87_RS05455at 1160.937 kb on + strand, within ABZR87_RS05455at 1160.937 kb on + strand, within ABZR87_RS05455at 1160.937 kb on + strand, within ABZR87_RS05455at 1160.938 kb on - strand, within ABZR87_RS05455at 1160.938 kb on - strand, within ABZR87_RS05455at 1160.938 kb on - strand, within ABZR87_RS05455at 1160.938 kb on - strand, within ABZR87_RS05455at 1160.938 kb on - strand, within ABZR87_RS05455at 1160.938 kb on - strand, within ABZR87_RS05455at 1160.938 kb on - strand, within ABZR87_RS05455at 1160.993 kb on + strandat 1160.994 kb on - strandat 1161.069 kb on + strandat 1161.069 kb on + strandat 1161.070 kb on - strandat 1161.070 kb on - strandat 1161.070 kb on - strandat 1161.145 kb on + strandat 1161.145 kb on + strandat 1161.145 kb on + strandat 1161.145 kb on + strandat 1161.146 kb on - strandat 1161.146 kb on - strandat 1161.316 kb on + strand, within ABZR87_RS05460at 1161.316 kb on + strand, within ABZR87_RS05460at 1161.316 kb on + strand, within ABZR87_RS05460at 1161.316 kb on + strand, within ABZR87_RS05460at 1161.316 kb on + strand, within ABZR87_RS05460at 1161.316 kb on + strand, within ABZR87_RS05460at 1161.316 kb on + strand, within ABZR87_RS05460at 1161.317 kb on - strand, within ABZR87_RS05460at 1161.317 kb on - strand, within ABZR87_RS05460at 1161.317 kb on - strand, within ABZR87_RS05460at 1161.317 kb on - strand, within ABZR87_RS05460at 1161.317 kb on - strand, within ABZR87_RS05460at 1161.317 kb on - strand, within ABZR87_RS05460at 1161.317 kb on - strand, within ABZR87_RS05460at 1161.317 kb on - strand, within ABZR87_RS05460at 1161.317 kb on - strand, within ABZR87_RS05460at 1161.317 kb on - strand, within ABZR87_RS05460at 1161.448 kb on + strand, within ABZR87_RS05460at 1161.448 kb on + strand, within ABZR87_RS05460at 1161.448 kb on + strand, within ABZR87_RS05460at 1161.449 kb on - strand, within ABZR87_RS05460at 1161.449 kb on - strand, within ABZR87_RS05460at 1161.449 kb on - strand, within ABZR87_RS05460at 1161.449 kb on - strand, within ABZR87_RS05460at 1161.449 kb on - strand, within ABZR87_RS05460at 1161.464 kb on + strand, within ABZR87_RS05460at 1161.464 kb on + strand, within ABZR87_RS05460at 1161.465 kb on - strand, within ABZR87_RS05460at 1161.465 kb on - strand, within ABZR87_RS05460at 1161.710 kb on - strand, within ABZR87_RS05460at 1161.730 kb on + strand, within ABZR87_RS05460at 1161.731 kb on - strand, within ABZR87_RS05460at 1161.731 kb on - strand, within ABZR87_RS05460at 1161.731 kb on - strand, within ABZR87_RS05460at 1162.038 kb on + strand, within ABZR87_RS05465at 1162.038 kb on + strand, within ABZR87_RS05465at 1162.038 kb on + strand, within ABZR87_RS05465at 1162.038 kb on + strand, within ABZR87_RS05465at 1162.038 kb on + strand, within ABZR87_RS05465at 1162.038 kb on + strand, within ABZR87_RS05465at 1162.038 kb on + strand, within ABZR87_RS05465at 1162.038 kb on + strand, within ABZR87_RS05465at 1162.038 kb on + strand, within ABZR87_RS05465at 1162.039 kb on - strand, within ABZR87_RS05465at 1162.039 kb on - strand, within ABZR87_RS05465at 1162.039 kb on - strand, within ABZR87_RS05465at 1162.039 kb on - strand, within ABZR87_RS05465at 1162.039 kb on - strand, within ABZR87_RS05465at 1162.039 kb on - strand, within ABZR87_RS05465at 1162.039 kb on - strand, within ABZR87_RS05465at 1162.039 kb on - strand, within ABZR87_RS05465at 1162.039 kb on - strand, within ABZR87_RS05465at 1162.039 kb on - strand, within ABZR87_RS05465

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB
remove
1,159,353 + +0.0
1,159,373 + +0.2
1,159,373 + -0.2
1,159,398 + -1.9
1,159,398 + +0.6
1,159,398 + -0.1
1,159,399 - -0.2
1,159,399 - -0.1
1,159,399 - -0.2
1,159,399 - +0.1
1,159,399 - +1.6
1,160,463 + ABZR87_RS05455 0.26 -0.7
1,160,463 + ABZR87_RS05455 0.26 +0.1
1,160,463 + ABZR87_RS05455 0.26 +0.2
1,160,463 + ABZR87_RS05455 0.26 -1.9
1,160,463 + ABZR87_RS05455 0.26 -0.8
1,160,464 - ABZR87_RS05455 0.27 +0.3
1,160,464 - ABZR87_RS05455 0.27 -0.3
1,160,464 - ABZR87_RS05455 0.27 -0.3
1,160,464 - ABZR87_RS05455 0.27 -0.1
1,160,543 + ABZR87_RS05455 0.36 +0.1
1,160,543 + ABZR87_RS05455 0.36 +1.0
1,160,595 - ABZR87_RS05455 0.42 +0.1
1,160,595 - ABZR87_RS05455 0.42 +0.2
1,160,661 + ABZR87_RS05455 0.50 -2.4
1,160,661 + ABZR87_RS05455 0.50 -0.2
1,160,661 + ABZR87_RS05455 0.50 -0.2
1,160,661 + ABZR87_RS05455 0.50 +0.3
1,160,661 + ABZR87_RS05455 0.50 -0.5
1,160,662 - ABZR87_RS05455 0.50 +0.8
1,160,662 - ABZR87_RS05455 0.50 +0.8
1,160,791 - ABZR87_RS05455 0.66 +0.8
1,160,791 - ABZR87_RS05455 0.66 +0.5
1,160,820 + ABZR87_RS05455 0.70 +0.5
1,160,820 + ABZR87_RS05455 0.70 -0.1
1,160,820 + ABZR87_RS05455 0.70 -1.4
1,160,820 + ABZR87_RS05455 0.70 +1.1
1,160,821 - ABZR87_RS05455 0.70 +0.4
1,160,821 - ABZR87_RS05455 0.70 +0.3
1,160,821 - ABZR87_RS05455 0.70 -1.3
1,160,821 - ABZR87_RS05455 0.70 -1.1
1,160,821 - ABZR87_RS05455 0.70 +0.3
1,160,821 - ABZR87_RS05455 0.70 -1.9
1,160,821 - ABZR87_RS05455 0.70 +0.6
1,160,821 - ABZR87_RS05455 0.70 -0.1
1,160,936 + ABZR87_RS05455 0.84 +0.5
1,160,937 + ABZR87_RS05455 0.84 +0.7
1,160,937 + ABZR87_RS05455 0.84 -0.0
1,160,937 + ABZR87_RS05455 0.84 -0.5
1,160,937 + ABZR87_RS05455 0.84 +0.0
1,160,937 + ABZR87_RS05455 0.84 +2.2
1,160,937 + ABZR87_RS05455 0.84 +0.9
1,160,937 + ABZR87_RS05455 0.84 -0.4
1,160,937 + ABZR87_RS05455 0.84 +2.6
1,160,937 + ABZR87_RS05455 0.84 -0.3
1,160,937 + ABZR87_RS05455 0.84 +0.5
1,160,937 + ABZR87_RS05455 0.84 +0.7
1,160,937 + ABZR87_RS05455 0.84 +0.4
1,160,937 + ABZR87_RS05455 0.84 -0.6
1,160,937 + ABZR87_RS05455 0.84 -0.4
1,160,938 - ABZR87_RS05455 0.84 -0.6
1,160,938 - ABZR87_RS05455 0.84 -1.8
1,160,938 - ABZR87_RS05455 0.84 +0.5
1,160,938 - ABZR87_RS05455 0.84 -0.5
1,160,938 - ABZR87_RS05455 0.84 +1.4
1,160,938 - ABZR87_RS05455 0.84 +0.8
1,160,938 - ABZR87_RS05455 0.84 -2.2
1,160,993 + +0.2
1,160,994 - +0.3
1,161,069 + +3.0
1,161,069 + +0.5
1,161,070 - -0.5
1,161,070 - -0.4
1,161,070 - +0.8
1,161,145 + +0.6
1,161,145 + -0.7
1,161,145 + -0.7
1,161,145 + -1.2
1,161,146 - +0.3
1,161,146 - +1.3
1,161,316 + ABZR87_RS05460 0.24 -0.5
1,161,316 + ABZR87_RS05460 0.24 -0.7
1,161,316 + ABZR87_RS05460 0.24 +0.5
1,161,316 + ABZR87_RS05460 0.24 -0.8
1,161,316 + ABZR87_RS05460 0.24 -0.9
1,161,316 + ABZR87_RS05460 0.24 -0.4
1,161,316 + ABZR87_RS05460 0.24 +0.8
1,161,317 - ABZR87_RS05460 0.24 -0.9
1,161,317 - ABZR87_RS05460 0.24 -0.3
1,161,317 - ABZR87_RS05460 0.24 -0.5
1,161,317 - ABZR87_RS05460 0.24 -1.4
1,161,317 - ABZR87_RS05460 0.24 -0.6
1,161,317 - ABZR87_RS05460 0.24 -0.2
1,161,317 - ABZR87_RS05460 0.24 -0.1
1,161,317 - ABZR87_RS05460 0.24 +0.5
1,161,317 - ABZR87_RS05460 0.24 +0.4
1,161,317 - ABZR87_RS05460 0.24 -0.5
1,161,448 + ABZR87_RS05460 0.42 +0.9
1,161,448 + ABZR87_RS05460 0.42 +0.5
1,161,448 + ABZR87_RS05460 0.42 +0.3
1,161,449 - ABZR87_RS05460 0.42 -0.1
1,161,449 - ABZR87_RS05460 0.42 +0.8
1,161,449 - ABZR87_RS05460 0.42 -1.9
1,161,449 - ABZR87_RS05460 0.42 +0.4
1,161,449 - ABZR87_RS05460 0.42 -1.6
1,161,464 + ABZR87_RS05460 0.44 +0.2
1,161,464 + ABZR87_RS05460 0.44 -0.7
1,161,465 - ABZR87_RS05460 0.44 -0.1
1,161,465 - ABZR87_RS05460 0.44 -0.3
1,161,710 - ABZR87_RS05460 0.78 +1.1
1,161,730 + ABZR87_RS05460 0.80 -0.0
1,161,731 - ABZR87_RS05460 0.81 -0.4
1,161,731 - ABZR87_RS05460 0.81 -0.4
1,161,731 - ABZR87_RS05460 0.81 +0.0
1,162,038 + ABZR87_RS05465 0.26 -0.1
1,162,038 + ABZR87_RS05465 0.26 +0.3
1,162,038 + ABZR87_RS05465 0.26 +0.7
1,162,038 + ABZR87_RS05465 0.26 -0.1
1,162,038 + ABZR87_RS05465 0.26 -0.4
1,162,038 + ABZR87_RS05465 0.26 +0.4
1,162,038 + ABZR87_RS05465 0.26 +0.3
1,162,038 + ABZR87_RS05465 0.26 +0.9
1,162,038 + ABZR87_RS05465 0.26 +0.7
1,162,039 - ABZR87_RS05465 0.26 -1.4
1,162,039 - ABZR87_RS05465 0.26 -0.1
1,162,039 - ABZR87_RS05465 0.26 +0.0
1,162,039 - ABZR87_RS05465 0.26 +0.5
1,162,039 - ABZR87_RS05465 0.26 -0.1
1,162,039 - ABZR87_RS05465 0.26 -0.1
1,162,039 - ABZR87_RS05465 0.26 +0.4
1,162,039 - ABZR87_RS05465 0.26 -1.0
1,162,039 - ABZR87_RS05465 0.26 -0.4
1,162,039 - ABZR87_RS05465 0.26 -0.4

Or see this region's nucleotide sequence