Experiment: no_plant_soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04720 and ABZR87_RS04725 are separated by 42 nucleotides ABZR87_RS04725 and ABZR87_RS04730 are separated by 184 nucleotides ABZR87_RS04730 and ABZR87_RS04735 are separated by 109 nucleotides ABZR87_RS04735 and ABZR87_RS04740 are separated by 454 nucleotides
ABZR87_RS04720: ABZR87_RS04720 - IclR family transcriptional regulator, at 984,594 to 985,391
_RS04720
ABZR87_RS04725: ABZR87_RS04725 - universal stress protein, at 985,434 to 985,868
_RS04725
ABZR87_RS04730: ABZR87_RS04730 - thioesterase family protein, at 986,053 to 986,496
_RS04730
ABZR87_RS04735: ABZR87_RS04735 - hypothetical protein, at 986,606 to 986,827
_RS04735
ABZR87_RS04740: ABZR87_RS04740 - hypothetical protein, at 987,282 to 987,566
_RS04740
Position (kb) 986
987 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 985.056 kb on + strand, within ABZR87_RS04720 at 985.056 kb on + strand, within ABZR87_RS04720 at 985.056 kb on + strand, within ABZR87_RS04720 at 985.056 kb on + strand, within ABZR87_RS04720 at 985.056 kb on + strand, within ABZR87_RS04720 at 985.056 kb on + strand, within ABZR87_RS04720 at 985.057 kb on - strand, within ABZR87_RS04720 at 985.057 kb on - strand, within ABZR87_RS04720 at 985.057 kb on - strand, within ABZR87_RS04720 at 985.057 kb on - strand, within ABZR87_RS04720 at 985.057 kb on - strand, within ABZR87_RS04720 at 985.057 kb on - strand, within ABZR87_RS04720 at 985.188 kb on + strand, within ABZR87_RS04720 at 985.189 kb on - strand, within ABZR87_RS04720 at 985.250 kb on + strand, within ABZR87_RS04720 at 985.251 kb on - strand, within ABZR87_RS04720 at 985.251 kb on - strand, within ABZR87_RS04720 at 985.251 kb on - strand, within ABZR87_RS04720 at 985.693 kb on + strand, within ABZR87_RS04725 at 985.694 kb on - strand, within ABZR87_RS04725 at 985.715 kb on + strand, within ABZR87_RS04725 at 985.831 kb on + strand at 985.832 kb on - strand at 985.854 kb on + strand at 985.855 kb on - strand at 985.855 kb on - strand at 985.855 kb on - strand at 985.855 kb on - strand at 985.929 kb on + strand at 985.930 kb on - strand at 985.930 kb on - strand at 985.956 kb on + strand at 985.957 kb on - strand at 985.968 kb on + strand at 985.968 kb on + strand at 985.968 kb on + strand at 985.968 kb on + strand at 985.968 kb on + strand at 985.969 kb on - strand at 985.969 kb on - strand at 985.969 kb on - strand at 985.969 kb on - strand at 985.969 kb on - strand at 985.969 kb on - strand at 985.969 kb on - strand at 986.161 kb on + strand, within ABZR87_RS04730 at 986.161 kb on + strand, within ABZR87_RS04730 at 986.161 kb on + strand, within ABZR87_RS04730 at 986.161 kb on + strand, within ABZR87_RS04730 at 986.162 kb on - strand, within ABZR87_RS04730 at 986.162 kb on - strand, within ABZR87_RS04730 at 986.387 kb on + strand, within ABZR87_RS04730 at 986.387 kb on + strand, within ABZR87_RS04730 at 986.430 kb on + strand, within ABZR87_RS04730 at 986.430 kb on + strand, within ABZR87_RS04730 at 986.431 kb on - strand, within ABZR87_RS04730 at 986.506 kb on + strand at 986.507 kb on - strand at 986.507 kb on - strand at 986.507 kb on - strand at 986.923 kb on + strand at 986.923 kb on + strand at 986.933 kb on + strand at 986.933 kb on + strand at 986.933 kb on + strand at 986.933 kb on + strand at 986.933 kb on + strand at 986.933 kb on + strand at 986.933 kb on + strand at 986.933 kb on + strand at 986.933 kb on + strand at 986.933 kb on + strand at 986.933 kb on + strand at 986.933 kb on + strand at 986.933 kb on + strand at 986.933 kb on + strand at 986.933 kb on + strand at 986.933 kb on + strand at 986.933 kb on + strand at 986.933 kb on + strand at 986.933 kb on + strand at 986.933 kb on + strand at 986.933 kb on + strand at 986.933 kb on + strand at 986.934 kb on - strand at 986.934 kb on - strand at 986.934 kb on - strand at 986.934 kb on - strand at 986.934 kb on - strand at 986.934 kb on - strand at 986.934 kb on - strand at 986.934 kb on - strand at 986.934 kb on - strand at 986.934 kb on - strand at 986.934 kb on - strand at 986.934 kb on - strand at 986.934 kb on - strand at 986.934 kb on - strand at 986.934 kb on - strand at 986.934 kb on - strand at 986.934 kb on - strand at 986.935 kb on + strand at 986.935 kb on + strand at 986.935 kb on + strand at 986.935 kb on + strand at 986.935 kb on + strand at 986.935 kb on + strand at 986.935 kb on + strand at 986.935 kb on + strand at 986.935 kb on + strand at 986.935 kb on + strand at 986.935 kb on + strand at 986.935 kb on + strand at 986.935 kb on + strand at 986.936 kb on - strand at 986.936 kb on - strand at 986.936 kb on - strand at 986.936 kb on - strand at 986.936 kb on - strand at 986.936 kb on - strand at 986.936 kb on - strand at 986.936 kb on - strand at 986.936 kb on - strand at 986.936 kb on - strand at 986.936 kb on - strand at 986.936 kb on - strand at 986.936 kb on - strand at 986.936 kb on - strand at 986.936 kb on - strand at 986.936 kb on - strand at 986.936 kb on - strand at 987.045 kb on + strand at 987.045 kb on + strand at 987.045 kb on + strand at 987.045 kb on + strand at 987.045 kb on + strand at 987.046 kb on - strand at 987.046 kb on - strand at 987.046 kb on - strand at 987.046 kb on - strand at 987.046 kb on - strand at 987.226 kb on + strand at 987.226 kb on + strand at 987.227 kb on - strand at 987.306 kb on + strand at 987.306 kb on + strand at 987.307 kb on - strand at 987.307 kb on - strand at 987.307 kb on - strand at 987.411 kb on + strand, within ABZR87_RS04740 at 987.412 kb on - strand, within ABZR87_RS04740 at 987.412 kb on - strand, within ABZR87_RS04740 at 987.412 kb on - strand, within ABZR87_RS04740 at 987.412 kb on - strand, within ABZR87_RS04740 at 987.430 kb on - strand, within ABZR87_RS04740 at 987.455 kb on + strand, within ABZR87_RS04740 at 987.474 kb on + strand, within ABZR87_RS04740 at 987.474 kb on + strand, within ABZR87_RS04740 at 987.474 kb on + strand, within ABZR87_RS04740 at 987.474 kb on + strand, within ABZR87_RS04740 at 987.474 kb on + strand, within ABZR87_RS04740 at 987.474 kb on + strand, within ABZR87_RS04740 at 987.475 kb on - strand, within ABZR87_RS04740 at 987.475 kb on - strand, within ABZR87_RS04740 at 987.475 kb on - strand, within ABZR87_RS04740
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB remove 985,056 + ABZR87_RS04720 0.58 -2.9 985,056 + ABZR87_RS04720 0.58 +0.5 985,056 + ABZR87_RS04720 0.58 -0.6 985,056 + ABZR87_RS04720 0.58 -0.9 985,056 + ABZR87_RS04720 0.58 +0.1 985,056 + ABZR87_RS04720 0.58 -0.2 985,057 - ABZR87_RS04720 0.58 -2.0 985,057 - ABZR87_RS04720 0.58 -1.2 985,057 - ABZR87_RS04720 0.58 +1.2 985,057 - ABZR87_RS04720 0.58 -0.3 985,057 - ABZR87_RS04720 0.58 -0.9 985,057 - ABZR87_RS04720 0.58 -2.1 985,188 + ABZR87_RS04720 0.74 -1.0 985,189 - ABZR87_RS04720 0.75 -0.5 985,250 + ABZR87_RS04720 0.82 -1.2 985,251 - ABZR87_RS04720 0.82 -0.8 985,251 - ABZR87_RS04720 0.82 -2.0 985,251 - ABZR87_RS04720 0.82 -0.4 985,693 + ABZR87_RS04725 0.60 +0.3 985,694 - ABZR87_RS04725 0.60 +5.2 985,715 + ABZR87_RS04725 0.65 +0.8 985,831 + +1.4 985,832 - -0.9 985,854 + +1.4 985,855 - -0.7 985,855 - -0.3 985,855 - +0.2 985,855 - -0.2 985,929 + +1.0 985,930 - -0.1 985,930 - -1.8 985,956 + -1.3 985,957 - -0.7 985,968 + +0.6 985,968 + -0.2 985,968 + -1.9 985,968 + +0.4 985,968 + +0.3 985,969 - -1.1 985,969 - +0.2 985,969 - +0.4 985,969 - -0.4 985,969 - +0.6 985,969 - -1.9 985,969 - -0.4 986,161 + ABZR87_RS04730 0.24 -0.4 986,161 + ABZR87_RS04730 0.24 +0.4 986,161 + ABZR87_RS04730 0.24 -2.0 986,161 + ABZR87_RS04730 0.24 +0.0 986,162 - ABZR87_RS04730 0.25 -0.5 986,162 - ABZR87_RS04730 0.25 -0.9 986,387 + ABZR87_RS04730 0.75 +0.3 986,387 + ABZR87_RS04730 0.75 -0.4 986,430 + ABZR87_RS04730 0.85 -1.1 986,430 + ABZR87_RS04730 0.85 -0.4 986,431 - ABZR87_RS04730 0.85 -0.2 986,506 + +0.4 986,507 - +0.5 986,507 - +1.7 986,507 - +1.7 986,923 + +1.3 986,923 + +1.0 986,933 + -0.6 986,933 + -0.1 986,933 + +0.2 986,933 + -0.0 986,933 + +0.7 986,933 + -0.4 986,933 + +0.5 986,933 + +2.3 986,933 + -2.0 986,933 + +0.8 986,933 + -0.7 986,933 + +0.2 986,933 + +0.7 986,933 + -0.3 986,933 + -0.3 986,933 + -0.0 986,933 + +0.2 986,933 + -0.6 986,933 + -1.4 986,933 + +0.0 986,933 + +0.1 986,933 + +1.0 986,934 - +0.5 986,934 - -0.2 986,934 - +0.9 986,934 - -0.8 986,934 - +0.0 986,934 - +0.7 986,934 - -0.3 986,934 - -0.6 986,934 - +0.1 986,934 - +0.1 986,934 - -1.1 986,934 - -0.2 986,934 - -0.4 986,934 - -0.1 986,934 - +0.7 986,934 - +0.7 986,934 - -0.1 986,935 + +0.8 986,935 + -0.0 986,935 + +0.4 986,935 + -0.6 986,935 + +0.8 986,935 + +0.9 986,935 + -0.5 986,935 + +0.1 986,935 + +0.3 986,935 + +0.1 986,935 + +0.2 986,935 + +0.9 986,935 + -1.1 986,936 - +0.4 986,936 - +0.2 986,936 - +0.7 986,936 - +0.4 986,936 - -0.2 986,936 - -1.0 986,936 - -0.8 986,936 - -1.6 986,936 - +0.4 986,936 - +0.8 986,936 - -0.8 986,936 - -0.4 986,936 - -1.5 986,936 - -0.0 986,936 - -0.7 986,936 - -0.6 986,936 - +0.5 987,045 + -0.3 987,045 + +0.0 987,045 + +1.0 987,045 + -1.0 987,045 + -0.0 987,046 - -0.4 987,046 - -0.3 987,046 - +0.1 987,046 - +0.7 987,046 - +0.1 987,226 + -0.5 987,226 + -0.5 987,227 - -0.2 987,306 + -0.1 987,306 + +1.0 987,307 - -0.2 987,307 - -0.5 987,307 - -0.3 987,411 + ABZR87_RS04740 0.45 +1.5 987,412 - ABZR87_RS04740 0.46 +0.6 987,412 - ABZR87_RS04740 0.46 -0.9 987,412 - ABZR87_RS04740 0.46 -0.0 987,412 - ABZR87_RS04740 0.46 +0.3 987,430 - ABZR87_RS04740 0.52 -0.9 987,455 + ABZR87_RS04740 0.61 +1.8 987,474 + ABZR87_RS04740 0.67 +0.3 987,474 + ABZR87_RS04740 0.67 -0.7 987,474 + ABZR87_RS04740 0.67 -0.8 987,474 + ABZR87_RS04740 0.67 -1.1 987,474 + ABZR87_RS04740 0.67 -0.3 987,474 + ABZR87_RS04740 0.67 +1.6 987,475 - ABZR87_RS04740 0.68 -0.3 987,475 - ABZR87_RS04740 0.68 +0.8 987,475 - ABZR87_RS04740 0.68 +0.3
Or see this region's nucleotide sequence