Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04585

Experiment: no_plant_soil sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04575 and ABZR87_RS04580 are separated by 147 nucleotidesABZR87_RS04580 and ABZR87_RS04585 overlap by 23 nucleotidesABZR87_RS04585 and ABZR87_RS04590 are separated by 12 nucleotides ABZR87_RS04575: ABZR87_RS04575 - ABC transporter substrate-binding protein, at 957,196 to 958,245 _RS04575 ABZR87_RS04580: ABZR87_RS04580 - response regulator, at 958,393 to 959,073 _RS04580 ABZR87_RS04585: ABZR87_RS04585 - sensor histidine kinase, at 959,051 to 960,526 _RS04585 ABZR87_RS04590: ABZR87_RS04590 - S-layer protein, at 960,539 to 962,197 _RS04590 Position (kb) 959 960 961Strain fitness (log2 ratio) -2 -1 0 1 2at 958.088 kb on + strand, within ABZR87_RS04575at 958.088 kb on + strand, within ABZR87_RS04575at 958.088 kb on + strand, within ABZR87_RS04575at 958.089 kb on - strand, within ABZR87_RS04575at 958.089 kb on - strand, within ABZR87_RS04575at 958.089 kb on - strand, within ABZR87_RS04575at 958.089 kb on - strand, within ABZR87_RS04575at 958.089 kb on - strand, within ABZR87_RS04575at 958.233 kb on + strandat 958.233 kb on + strandat 958.234 kb on - strandat 958.234 kb on - strandat 958.268 kb on + strandat 958.268 kb on + strandat 958.268 kb on + strandat 958.268 kb on + strandat 958.268 kb on + strandat 958.268 kb on + strandat 958.269 kb on - strandat 958.273 kb on - strandat 958.322 kb on - strandat 958.322 kb on - strandat 958.340 kb on + strandat 958.340 kb on + strandat 958.340 kb on + strandat 958.341 kb on - strandat 958.341 kb on - strandat 958.341 kb on - strandat 958.341 kb on - strandat 958.341 kb on - strandat 958.525 kb on + strand, within ABZR87_RS04580at 958.525 kb on + strand, within ABZR87_RS04580at 958.526 kb on - strand, within ABZR87_RS04580at 958.526 kb on - strand, within ABZR87_RS04580at 958.526 kb on - strand, within ABZR87_RS04580at 958.526 kb on - strand, within ABZR87_RS04580at 958.526 kb on - strand, within ABZR87_RS04580at 958.577 kb on + strand, within ABZR87_RS04580at 958.578 kb on - strand, within ABZR87_RS04580at 958.578 kb on - strand, within ABZR87_RS04580at 958.684 kb on + strand, within ABZR87_RS04580at 958.685 kb on - strand, within ABZR87_RS04580at 958.685 kb on - strand, within ABZR87_RS04580at 958.792 kb on + strand, within ABZR87_RS04580at 958.792 kb on + strand, within ABZR87_RS04580at 958.792 kb on + strand, within ABZR87_RS04580at 958.792 kb on + strand, within ABZR87_RS04580at 958.793 kb on - strand, within ABZR87_RS04580at 958.969 kb on + strand, within ABZR87_RS04580at 958.969 kb on + strand, within ABZR87_RS04580at 958.969 kb on + strand, within ABZR87_RS04580at 958.970 kb on - strand, within ABZR87_RS04580at 958.970 kb on - strand, within ABZR87_RS04580at 958.970 kb on - strand, within ABZR87_RS04580at 959.038 kb on + strandat 959.038 kb on + strandat 959.038 kb on + strandat 959.038 kb on + strandat 959.039 kb on - strandat 959.039 kb on - strandat 959.039 kb on - strandat 959.039 kb on - strandat 959.165 kb on + strandat 959.165 kb on + strandat 959.165 kb on + strandat 959.165 kb on + strandat 959.165 kb on + strandat 959.165 kb on + strandat 959.165 kb on + strandat 959.165 kb on + strandat 959.166 kb on - strandat 959.166 kb on - strandat 959.366 kb on + strand, within ABZR87_RS04585at 959.366 kb on + strand, within ABZR87_RS04585at 959.366 kb on + strand, within ABZR87_RS04585at 959.367 kb on - strand, within ABZR87_RS04585at 959.465 kb on + strand, within ABZR87_RS04585at 959.466 kb on - strand, within ABZR87_RS04585at 959.466 kb on - strand, within ABZR87_RS04585at 959.466 kb on - strand, within ABZR87_RS04585at 959.474 kb on - strand, within ABZR87_RS04585at 959.478 kb on + strand, within ABZR87_RS04585at 959.478 kb on + strand, within ABZR87_RS04585at 959.522 kb on + strand, within ABZR87_RS04585at 959.522 kb on + strand, within ABZR87_RS04585at 959.523 kb on - strand, within ABZR87_RS04585at 959.523 kb on - strand, within ABZR87_RS04585at 959.523 kb on - strand, within ABZR87_RS04585at 959.523 kb on - strand, within ABZR87_RS04585at 959.523 kb on - strand, within ABZR87_RS04585at 959.812 kb on + strand, within ABZR87_RS04585at 959.812 kb on + strand, within ABZR87_RS04585at 959.812 kb on + strand, within ABZR87_RS04585at 959.812 kb on + strand, within ABZR87_RS04585at 959.813 kb on - strand, within ABZR87_RS04585at 959.813 kb on - strand, within ABZR87_RS04585at 959.813 kb on - strand, within ABZR87_RS04585at 959.893 kb on + strand, within ABZR87_RS04585at 960.215 kb on + strand, within ABZR87_RS04585at 960.260 kb on + strand, within ABZR87_RS04585at 960.260 kb on + strand, within ABZR87_RS04585at 960.260 kb on + strand, within ABZR87_RS04585at 960.261 kb on - strand, within ABZR87_RS04585at 960.261 kb on - strand, within ABZR87_RS04585at 960.317 kb on + strand, within ABZR87_RS04585at 960.317 kb on + strand, within ABZR87_RS04585at 960.317 kb on + strand, within ABZR87_RS04585at 960.317 kb on + strand, within ABZR87_RS04585at 960.318 kb on - strand, within ABZR87_RS04585at 960.541 kb on - strandat 960.571 kb on - strandat 960.571 kb on - strandat 960.571 kb on - strandat 960.588 kb on + strandat 960.589 kb on - strandat 960.720 kb on + strand, within ABZR87_RS04590at 960.720 kb on + strand, within ABZR87_RS04590at 960.721 kb on - strand, within ABZR87_RS04590at 960.721 kb on - strand, within ABZR87_RS04590at 960.741 kb on + strand, within ABZR87_RS04590at 960.741 kb on + strand, within ABZR87_RS04590at 960.741 kb on + strand, within ABZR87_RS04590at 960.742 kb on - strand, within ABZR87_RS04590at 960.742 kb on - strand, within ABZR87_RS04590at 960.742 kb on - strand, within ABZR87_RS04590at 960.742 kb on - strand, within ABZR87_RS04590at 960.747 kb on + strand, within ABZR87_RS04590at 960.747 kb on + strand, within ABZR87_RS04590at 960.747 kb on + strand, within ABZR87_RS04590at 960.748 kb on - strand, within ABZR87_RS04590at 960.748 kb on - strand, within ABZR87_RS04590at 960.762 kb on + strand, within ABZR87_RS04590at 960.762 kb on + strand, within ABZR87_RS04590at 960.762 kb on + strand, within ABZR87_RS04590at 960.763 kb on - strand, within ABZR87_RS04590at 960.763 kb on - strand, within ABZR87_RS04590at 960.763 kb on - strand, within ABZR87_RS04590at 960.763 kb on - strand, within ABZR87_RS04590at 960.763 kb on - strand, within ABZR87_RS04590at 960.841 kb on - strand, within ABZR87_RS04590at 960.841 kb on - strand, within ABZR87_RS04590at 960.951 kb on + strand, within ABZR87_RS04590at 960.951 kb on + strand, within ABZR87_RS04590at 960.951 kb on + strand, within ABZR87_RS04590at 960.951 kb on + strand, within ABZR87_RS04590at 960.951 kb on + strand, within ABZR87_RS04590at 960.951 kb on + strand, within ABZR87_RS04590at 960.951 kb on + strand, within ABZR87_RS04590at 960.951 kb on + strand, within ABZR87_RS04590at 960.952 kb on - strand, within ABZR87_RS04590at 960.952 kb on - strand, within ABZR87_RS04590at 960.952 kb on - strand, within ABZR87_RS04590at 960.952 kb on - strand, within ABZR87_RS04590at 960.952 kb on - strand, within ABZR87_RS04590at 960.952 kb on - strand, within ABZR87_RS04590at 960.952 kb on - strand, within ABZR87_RS04590at 960.952 kb on - strand, within ABZR87_RS04590at 960.952 kb on - strand, within ABZR87_RS04590at 961.165 kb on + strand, within ABZR87_RS04590at 961.165 kb on + strand, within ABZR87_RS04590at 961.165 kb on + strand, within ABZR87_RS04590at 961.165 kb on + strand, within ABZR87_RS04590at 961.166 kb on - strand, within ABZR87_RS04590at 961.167 kb on + strand, within ABZR87_RS04590at 961.167 kb on + strand, within ABZR87_RS04590at 961.167 kb on + strand, within ABZR87_RS04590at 961.167 kb on + strand, within ABZR87_RS04590at 961.167 kb on + strand, within ABZR87_RS04590at 961.167 kb on + strand, within ABZR87_RS04590at 961.168 kb on - strand, within ABZR87_RS04590at 961.168 kb on - strand, within ABZR87_RS04590at 961.168 kb on - strand, within ABZR87_RS04590at 961.168 kb on - strand, within ABZR87_RS04590at 961.168 kb on - strand, within ABZR87_RS04590at 961.168 kb on - strand, within ABZR87_RS04590at 961.168 kb on - strand, within ABZR87_RS04590at 961.168 kb on - strand, within ABZR87_RS04590at 961.168 kb on - strand, within ABZR87_RS04590at 961.168 kb on - strand, within ABZR87_RS04590at 961.191 kb on + strand, within ABZR87_RS04590at 961.194 kb on + strand, within ABZR87_RS04590at 961.195 kb on - strand, within ABZR87_RS04590at 961.195 kb on - strand, within ABZR87_RS04590at 961.318 kb on - strand, within ABZR87_RS04590at 961.332 kb on + strand, within ABZR87_RS04590at 961.332 kb on + strand, within ABZR87_RS04590at 961.332 kb on + strand, within ABZR87_RS04590at 961.363 kb on - strand, within ABZR87_RS04590at 961.363 kb on - strand, within ABZR87_RS04590at 961.363 kb on - strand, within ABZR87_RS04590at 961.372 kb on + strand, within ABZR87_RS04590at 961.372 kb on + strand, within ABZR87_RS04590at 961.375 kb on - strand, within ABZR87_RS04590at 961.476 kb on + strand, within ABZR87_RS04590at 961.476 kb on + strand, within ABZR87_RS04590at 961.476 kb on + strand, within ABZR87_RS04590at 961.515 kb on + strand, within ABZR87_RS04590at 961.516 kb on - strand, within ABZR87_RS04590at 961.516 kb on - strand, within ABZR87_RS04590

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB
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958,088 + ABZR87_RS04575 0.85 -0.2
958,088 + ABZR87_RS04575 0.85 +0.3
958,088 + ABZR87_RS04575 0.85 -0.1
958,089 - ABZR87_RS04575 0.85 -0.2
958,089 - ABZR87_RS04575 0.85 +0.2
958,089 - ABZR87_RS04575 0.85 +0.9
958,089 - ABZR87_RS04575 0.85 +0.5
958,089 - ABZR87_RS04575 0.85 -0.6
958,233 + +0.8
958,233 + +0.4
958,234 - +0.2
958,234 - +0.7
958,268 + -1.4
958,268 + +0.3
958,268 + +0.6
958,268 + +0.3
958,268 + -0.6
958,268 + -0.3
958,269 - +1.3
958,273 - -0.1
958,322 - -0.2
958,322 - -0.1
958,340 + -0.8
958,340 + +0.2
958,340 + +0.7
958,341 - +0.8
958,341 - +0.3
958,341 - -0.3
958,341 - -0.4
958,341 - -0.1
958,525 + ABZR87_RS04580 0.19 -0.2
958,525 + ABZR87_RS04580 0.19 +0.5
958,526 - ABZR87_RS04580 0.20 +0.3
958,526 - ABZR87_RS04580 0.20 -1.4
958,526 - ABZR87_RS04580 0.20 +0.1
958,526 - ABZR87_RS04580 0.20 -1.2
958,526 - ABZR87_RS04580 0.20 -0.8
958,577 + ABZR87_RS04580 0.27 +0.8
958,578 - ABZR87_RS04580 0.27 +1.7
958,578 - ABZR87_RS04580 0.27 -0.9
958,684 + ABZR87_RS04580 0.43 -0.5
958,685 - ABZR87_RS04580 0.43 -0.6
958,685 - ABZR87_RS04580 0.43 -0.3
958,792 + ABZR87_RS04580 0.59 -0.4
958,792 + ABZR87_RS04580 0.59 -1.5
958,792 + ABZR87_RS04580 0.59 -0.9
958,792 + ABZR87_RS04580 0.59 -1.1
958,793 - ABZR87_RS04580 0.59 +1.8
958,969 + ABZR87_RS04580 0.85 -0.1
958,969 + ABZR87_RS04580 0.85 +1.2
958,969 + ABZR87_RS04580 0.85 -0.5
958,970 - ABZR87_RS04580 0.85 +0.5
958,970 - ABZR87_RS04580 0.85 -1.1
958,970 - ABZR87_RS04580 0.85 -0.2
959,038 + -0.2
959,038 + -0.1
959,038 + +0.1
959,038 + -0.1
959,039 - -0.7
959,039 - -0.3
959,039 - +0.8
959,039 - +0.5
959,165 + +0.2
959,165 + +0.8
959,165 + +0.4
959,165 + -0.2
959,165 + -1.0
959,165 + +0.7
959,165 + -0.6
959,165 + +0.4
959,166 - -0.1
959,166 - -0.9
959,366 + ABZR87_RS04585 0.21 -0.5
959,366 + ABZR87_RS04585 0.21 -0.5
959,366 + ABZR87_RS04585 0.21 -1.4
959,367 - ABZR87_RS04585 0.21 -0.4
959,465 + ABZR87_RS04585 0.28 -1.2
959,466 - ABZR87_RS04585 0.28 +1.3
959,466 - ABZR87_RS04585 0.28 -0.5
959,466 - ABZR87_RS04585 0.28 -0.3
959,474 - ABZR87_RS04585 0.29 -0.2
959,478 + ABZR87_RS04585 0.29 -0.2
959,478 + ABZR87_RS04585 0.29 +0.6
959,522 + ABZR87_RS04585 0.32 -0.2
959,522 + ABZR87_RS04585 0.32 -0.4
959,523 - ABZR87_RS04585 0.32 +0.3
959,523 - ABZR87_RS04585 0.32 -0.9
959,523 - ABZR87_RS04585 0.32 -1.0
959,523 - ABZR87_RS04585 0.32 -1.2
959,523 - ABZR87_RS04585 0.32 +0.5
959,812 + ABZR87_RS04585 0.52 -1.0
959,812 + ABZR87_RS04585 0.52 +0.9
959,812 + ABZR87_RS04585 0.52 -1.5
959,812 + ABZR87_RS04585 0.52 -0.1
959,813 - ABZR87_RS04585 0.52 +0.5
959,813 - ABZR87_RS04585 0.52 -1.4
959,813 - ABZR87_RS04585 0.52 +0.6
959,893 + ABZR87_RS04585 0.57 -0.8
960,215 + ABZR87_RS04585 0.79 -0.8
960,260 + ABZR87_RS04585 0.82 -0.9
960,260 + ABZR87_RS04585 0.82 +0.5
960,260 + ABZR87_RS04585 0.82 -0.3
960,261 - ABZR87_RS04585 0.82 -0.2
960,261 - ABZR87_RS04585 0.82 +0.0
960,317 + ABZR87_RS04585 0.86 -0.3
960,317 + ABZR87_RS04585 0.86 -1.4
960,317 + ABZR87_RS04585 0.86 +0.3
960,317 + ABZR87_RS04585 0.86 -0.3
960,318 - ABZR87_RS04585 0.86 +0.3
960,541 - -0.4
960,571 - +0.7
960,571 - -0.5
960,571 - -1.5
960,588 + +0.2
960,589 - -0.2
960,720 + ABZR87_RS04590 0.11 +0.4
960,720 + ABZR87_RS04590 0.11 +0.8
960,721 - ABZR87_RS04590 0.11 +0.2
960,721 - ABZR87_RS04590 0.11 -0.6
960,741 + ABZR87_RS04590 0.12 +0.2
960,741 + ABZR87_RS04590 0.12 -0.7
960,741 + ABZR87_RS04590 0.12 +0.0
960,742 - ABZR87_RS04590 0.12 -1.8
960,742 - ABZR87_RS04590 0.12 +0.6
960,742 - ABZR87_RS04590 0.12 -0.4
960,742 - ABZR87_RS04590 0.12 -0.0
960,747 + ABZR87_RS04590 0.13 -1.0
960,747 + ABZR87_RS04590 0.13 +0.1
960,747 + ABZR87_RS04590 0.13 +0.3
960,748 - ABZR87_RS04590 0.13 +0.2
960,748 - ABZR87_RS04590 0.13 +0.6
960,762 + ABZR87_RS04590 0.13 +0.5
960,762 + ABZR87_RS04590 0.13 -0.0
960,762 + ABZR87_RS04590 0.13 -0.7
960,763 - ABZR87_RS04590 0.14 +0.8
960,763 - ABZR87_RS04590 0.14 -0.1
960,763 - ABZR87_RS04590 0.14 +0.2
960,763 - ABZR87_RS04590 0.14 +0.8
960,763 - ABZR87_RS04590 0.14 -0.3
960,841 - ABZR87_RS04590 0.18 -2.1
960,841 - ABZR87_RS04590 0.18 -1.3
960,951 + ABZR87_RS04590 0.25 -0.6
960,951 + ABZR87_RS04590 0.25 -1.0
960,951 + ABZR87_RS04590 0.25 -0.4
960,951 + ABZR87_RS04590 0.25 -0.7
960,951 + ABZR87_RS04590 0.25 -0.2
960,951 + ABZR87_RS04590 0.25 -0.4
960,951 + ABZR87_RS04590 0.25 -1.6
960,951 + ABZR87_RS04590 0.25 -0.1
960,952 - ABZR87_RS04590 0.25 +0.1
960,952 - ABZR87_RS04590 0.25 -1.4
960,952 - ABZR87_RS04590 0.25 +0.6
960,952 - ABZR87_RS04590 0.25 -0.2
960,952 - ABZR87_RS04590 0.25 -1.1
960,952 - ABZR87_RS04590 0.25 +0.7
960,952 - ABZR87_RS04590 0.25 +0.3
960,952 - ABZR87_RS04590 0.25 +0.4
960,952 - ABZR87_RS04590 0.25 -0.3
961,165 + ABZR87_RS04590 0.38 -0.4
961,165 + ABZR87_RS04590 0.38 -0.8
961,165 + ABZR87_RS04590 0.38 -1.5
961,165 + ABZR87_RS04590 0.38 -0.8
961,166 - ABZR87_RS04590 0.38 +1.0
961,167 + ABZR87_RS04590 0.38 +0.2
961,167 + ABZR87_RS04590 0.38 -0.2
961,167 + ABZR87_RS04590 0.38 +0.7
961,167 + ABZR87_RS04590 0.38 -0.6
961,167 + ABZR87_RS04590 0.38 +0.2
961,167 + ABZR87_RS04590 0.38 -1.2
961,168 - ABZR87_RS04590 0.38 +1.0
961,168 - ABZR87_RS04590 0.38 -0.3
961,168 - ABZR87_RS04590 0.38 -0.6
961,168 - ABZR87_RS04590 0.38 -0.3
961,168 - ABZR87_RS04590 0.38 -0.9
961,168 - ABZR87_RS04590 0.38 -0.6
961,168 - ABZR87_RS04590 0.38 +1.3
961,168 - ABZR87_RS04590 0.38 +0.5
961,168 - ABZR87_RS04590 0.38 -1.2
961,168 - ABZR87_RS04590 0.38 -0.1
961,191 + ABZR87_RS04590 0.39 +0.2
961,194 + ABZR87_RS04590 0.39 +0.5
961,195 - ABZR87_RS04590 0.40 +0.9
961,195 - ABZR87_RS04590 0.40 -0.1
961,318 - ABZR87_RS04590 0.47 -0.4
961,332 + ABZR87_RS04590 0.48 -1.0
961,332 + ABZR87_RS04590 0.48 -0.2
961,332 + ABZR87_RS04590 0.48 +1.0
961,363 - ABZR87_RS04590 0.50 -0.7
961,363 - ABZR87_RS04590 0.50 +0.4
961,363 - ABZR87_RS04590 0.50 -0.6
961,372 + ABZR87_RS04590 0.50 -0.9
961,372 + ABZR87_RS04590 0.50 +0.4
961,375 - ABZR87_RS04590 0.50 +0.6
961,476 + ABZR87_RS04590 0.56 -1.0
961,476 + ABZR87_RS04590 0.56 +0.5
961,476 + ABZR87_RS04590 0.56 +0.1
961,515 + ABZR87_RS04590 0.59 -0.7
961,516 - ABZR87_RS04590 0.59 +0.3
961,516 - ABZR87_RS04590 0.59 -0.3

Or see this region's nucleotide sequence