Experiment: no_plant_soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04005 and ABZR87_RS04010 are separated by 122 nucleotides ABZR87_RS04010 and ABZR87_RS04015 are separated by 224 nucleotides ABZR87_RS04015 and ABZR87_RS04020 are separated by 107 nucleotides
ABZR87_RS04005: ABZR87_RS04005 - hypothetical protein, at 840,001 to 841,158
_RS04005
ABZR87_RS04010: ABZR87_RS04010 - methyl-accepting chemotaxis protein, at 841,281 to 843,083
_RS04010
ABZR87_RS04015: ABZR87_RS04015 - hypothetical protein, at 843,308 to 843,745
_RS04015
ABZR87_RS04020: ABZR87_RS04020 - sterol desaturase family protein, at 843,853 to 844,782
_RS04020
Position (kb) 841
842
843
844 Strain fitness (log2 ratio) -2
-1
0
1 at 840.491 kb on + strand, within ABZR87_RS04005 at 840.491 kb on + strand, within ABZR87_RS04005 at 840.491 kb on + strand, within ABZR87_RS04005 at 840.492 kb on - strand, within ABZR87_RS04005 at 840.492 kb on - strand, within ABZR87_RS04005 at 840.492 kb on - strand, within ABZR87_RS04005 at 840.492 kb on - strand, within ABZR87_RS04005 at 840.492 kb on - strand, within ABZR87_RS04005 at 840.530 kb on + strand, within ABZR87_RS04005 at 840.595 kb on + strand, within ABZR87_RS04005 at 840.595 kb on + strand, within ABZR87_RS04005 at 840.596 kb on - strand, within ABZR87_RS04005 at 840.596 kb on - strand, within ABZR87_RS04005 at 840.666 kb on - strand, within ABZR87_RS04005 at 840.753 kb on + strand, within ABZR87_RS04005 at 840.753 kb on + strand, within ABZR87_RS04005 at 840.753 kb on + strand, within ABZR87_RS04005 at 840.753 kb on + strand, within ABZR87_RS04005 at 840.753 kb on + strand, within ABZR87_RS04005 at 840.753 kb on + strand, within ABZR87_RS04005 at 840.754 kb on - strand, within ABZR87_RS04005 at 840.754 kb on - strand, within ABZR87_RS04005 at 840.754 kb on - strand, within ABZR87_RS04005 at 840.754 kb on - strand, within ABZR87_RS04005 at 840.899 kb on - strand, within ABZR87_RS04005 at 841.158 kb on + strand at 841.232 kb on + strand at 841.232 kb on + strand at 841.232 kb on + strand at 841.233 kb on - strand at 841.233 kb on - strand at 841.395 kb on - strand at 841.760 kb on + strand, within ABZR87_RS04010 at 841.761 kb on - strand, within ABZR87_RS04010 at 842.326 kb on + strand, within ABZR87_RS04010 at 842.326 kb on + strand, within ABZR87_RS04010 at 842.326 kb on + strand, within ABZR87_RS04010 at 842.327 kb on - strand, within ABZR87_RS04010 at 842.327 kb on - strand, within ABZR87_RS04010 at 842.327 kb on - strand, within ABZR87_RS04010 at 842.647 kb on + strand, within ABZR87_RS04010 at 842.647 kb on + strand, within ABZR87_RS04010 at 842.648 kb on - strand, within ABZR87_RS04010 at 842.648 kb on - strand, within ABZR87_RS04010 at 842.719 kb on + strand, within ABZR87_RS04010 at 842.719 kb on + strand, within ABZR87_RS04010 at 842.719 kb on + strand, within ABZR87_RS04010 at 842.719 kb on + strand, within ABZR87_RS04010 at 842.720 kb on - strand, within ABZR87_RS04010 at 842.720 kb on - strand, within ABZR87_RS04010 at 842.744 kb on - strand, within ABZR87_RS04010 at 842.998 kb on + strand at 842.998 kb on + strand at 842.998 kb on + strand at 842.998 kb on + strand at 842.998 kb on + strand at 842.999 kb on - strand at 842.999 kb on - strand at 842.999 kb on - strand at 842.999 kb on - strand at 842.999 kb on - strand at 843.002 kb on + strand at 843.002 kb on + strand at 843.084 kb on - strand at 843.092 kb on + strand at 843.092 kb on + strand at 843.092 kb on + strand at 843.092 kb on + strand at 843.092 kb on + strand at 843.092 kb on + strand at 843.093 kb on - strand at 843.124 kb on + strand at 843.124 kb on + strand at 843.124 kb on + strand at 843.125 kb on - strand at 843.129 kb on + strand at 843.129 kb on + strand at 843.129 kb on + strand at 843.129 kb on + strand at 843.130 kb on - strand at 843.130 kb on - strand at 843.130 kb on - strand at 843.130 kb on - strand at 843.187 kb on + strand at 843.188 kb on - strand at 843.188 kb on - strand at 843.248 kb on + strand at 843.248 kb on + strand at 843.248 kb on + strand at 843.248 kb on + strand at 843.248 kb on + strand at 843.249 kb on - strand at 843.249 kb on - strand at 843.249 kb on - strand at 843.250 kb on + strand at 843.250 kb on + strand at 843.250 kb on + strand at 843.251 kb on - strand at 843.251 kb on - strand at 843.251 kb on - strand at 843.251 kb on - strand at 843.251 kb on - strand at 843.543 kb on + strand, within ABZR87_RS04015 at 843.543 kb on + strand, within ABZR87_RS04015 at 843.543 kb on + strand, within ABZR87_RS04015 at 843.544 kb on - strand, within ABZR87_RS04015 at 843.544 kb on - strand, within ABZR87_RS04015 at 843.544 kb on - strand, within ABZR87_RS04015 at 843.572 kb on + strand, within ABZR87_RS04015 at 843.572 kb on + strand, within ABZR87_RS04015 at 843.656 kb on + strand, within ABZR87_RS04015 at 843.656 kb on + strand, within ABZR87_RS04015 at 843.656 kb on + strand, within ABZR87_RS04015 at 843.763 kb on + strand at 843.763 kb on + strand at 843.763 kb on + strand at 843.763 kb on + strand at 843.763 kb on + strand at 843.763 kb on + strand at 843.763 kb on + strand at 843.763 kb on + strand at 843.763 kb on + strand at 843.763 kb on + strand at 843.763 kb on + strand at 843.763 kb on + strand at 843.764 kb on - strand at 843.764 kb on - strand at 843.764 kb on - strand at 843.764 kb on - strand at 843.764 kb on - strand at 843.764 kb on - strand at 843.764 kb on - strand at 843.955 kb on + strand, within ABZR87_RS04020 at 843.955 kb on + strand, within ABZR87_RS04020 at 843.955 kb on + strand, within ABZR87_RS04020 at 843.955 kb on + strand, within ABZR87_RS04020 at 843.955 kb on + strand, within ABZR87_RS04020 at 843.955 kb on + strand, within ABZR87_RS04020 at 843.955 kb on + strand, within ABZR87_RS04020 at 843.955 kb on + strand, within ABZR87_RS04020 at 843.956 kb on - strand, within ABZR87_RS04020 at 843.956 kb on - strand, within ABZR87_RS04020 at 843.998 kb on + strand, within ABZR87_RS04020 at 843.998 kb on + strand, within ABZR87_RS04020 at 844.013 kb on + strand, within ABZR87_RS04020 at 844.013 kb on + strand, within ABZR87_RS04020 at 844.013 kb on + strand, within ABZR87_RS04020 at 844.013 kb on + strand, within ABZR87_RS04020 at 844.014 kb on - strand, within ABZR87_RS04020 at 844.064 kb on - strand, within ABZR87_RS04020
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB remove 840,491 + ABZR87_RS04005 0.42 +0.8 840,491 + ABZR87_RS04005 0.42 -0.7 840,491 + ABZR87_RS04005 0.42 +0.9 840,492 - ABZR87_RS04005 0.42 -0.4 840,492 - ABZR87_RS04005 0.42 +1.0 840,492 - ABZR87_RS04005 0.42 -1.1 840,492 - ABZR87_RS04005 0.42 +0.4 840,492 - ABZR87_RS04005 0.42 -0.0 840,530 + ABZR87_RS04005 0.46 +0.2 840,595 + ABZR87_RS04005 0.51 -0.8 840,595 + ABZR87_RS04005 0.51 +1.2 840,596 - ABZR87_RS04005 0.51 +0.6 840,596 - ABZR87_RS04005 0.51 -1.1 840,666 - ABZR87_RS04005 0.57 -0.2 840,753 + ABZR87_RS04005 0.65 +0.1 840,753 + ABZR87_RS04005 0.65 -1.0 840,753 + ABZR87_RS04005 0.65 +0.1 840,753 + ABZR87_RS04005 0.65 -0.2 840,753 + ABZR87_RS04005 0.65 -0.6 840,753 + ABZR87_RS04005 0.65 -1.3 840,754 - ABZR87_RS04005 0.65 +0.2 840,754 - ABZR87_RS04005 0.65 -0.8 840,754 - ABZR87_RS04005 0.65 +0.0 840,754 - ABZR87_RS04005 0.65 +0.6 840,899 - ABZR87_RS04005 0.78 -0.2 841,158 + +0.3 841,232 + +0.5 841,232 + -0.9 841,232 + +0.2 841,233 - -0.2 841,233 - +0.1 841,395 - -0.3 841,760 + ABZR87_RS04010 0.27 -1.4 841,761 - ABZR87_RS04010 0.27 -0.9 842,326 + ABZR87_RS04010 0.58 -0.7 842,326 + ABZR87_RS04010 0.58 -1.7 842,326 + ABZR87_RS04010 0.58 +0.5 842,327 - ABZR87_RS04010 0.58 -0.3 842,327 - ABZR87_RS04010 0.58 +0.2 842,327 - ABZR87_RS04010 0.58 -0.7 842,647 + ABZR87_RS04010 0.76 +0.1 842,647 + ABZR87_RS04010 0.76 -0.3 842,648 - ABZR87_RS04010 0.76 -0.4 842,648 - ABZR87_RS04010 0.76 +0.1 842,719 + ABZR87_RS04010 0.80 -1.5 842,719 + ABZR87_RS04010 0.80 -0.6 842,719 + ABZR87_RS04010 0.80 -1.8 842,719 + ABZR87_RS04010 0.80 +0.9 842,720 - ABZR87_RS04010 0.80 +0.3 842,720 - ABZR87_RS04010 0.80 -1.5 842,744 - ABZR87_RS04010 0.81 +0.0 842,998 + +0.4 842,998 + -0.1 842,998 + -0.6 842,998 + +0.5 842,998 + +0.8 842,999 - +1.2 842,999 - -1.4 842,999 - +0.3 842,999 - -1.0 842,999 - -0.4 843,002 + +0.1 843,002 + +0.6 843,084 - -1.8 843,092 + -1.6 843,092 + -1.0 843,092 + -2.1 843,092 + -1.9 843,092 + +0.0 843,092 + -0.7 843,093 - -0.3 843,124 + -0.9 843,124 + -1.0 843,124 + +1.0 843,125 - -0.1 843,129 + -0.5 843,129 + -0.1 843,129 + -1.3 843,129 + +0.8 843,130 - -0.4 843,130 - +1.0 843,130 - -0.0 843,130 - -1.6 843,187 + +0.6 843,188 - -0.0 843,188 - +0.2 843,248 + +1.1 843,248 + -0.6 843,248 + -1.7 843,248 + -0.1 843,248 + +0.8 843,249 - -0.5 843,249 - -1.3 843,249 - -0.6 843,250 + -1.0 843,250 + -0.5 843,250 + -0.3 843,251 - +0.6 843,251 - -0.3 843,251 - +0.5 843,251 - -0.8 843,251 - -1.2 843,543 + ABZR87_RS04015 0.54 -0.3 843,543 + ABZR87_RS04015 0.54 +0.5 843,543 + ABZR87_RS04015 0.54 -0.4 843,544 - ABZR87_RS04015 0.54 +0.3 843,544 - ABZR87_RS04015 0.54 -0.0 843,544 - ABZR87_RS04015 0.54 +0.1 843,572 + ABZR87_RS04015 0.60 +0.7 843,572 + ABZR87_RS04015 0.60 -0.8 843,656 + ABZR87_RS04015 0.79 -1.3 843,656 + ABZR87_RS04015 0.79 -1.1 843,656 + ABZR87_RS04015 0.79 +0.1 843,763 + -0.1 843,763 + +0.3 843,763 + -0.1 843,763 + -0.9 843,763 + +1.0 843,763 + +0.4 843,763 + +0.1 843,763 + -0.0 843,763 + +0.2 843,763 + +0.3 843,763 + -1.5 843,763 + -2.1 843,764 - -0.2 843,764 - -0.2 843,764 - +0.7 843,764 - -0.3 843,764 - +0.1 843,764 - +1.2 843,764 - -0.9 843,955 + ABZR87_RS04020 0.11 -0.1 843,955 + ABZR87_RS04020 0.11 -0.1 843,955 + ABZR87_RS04020 0.11 -0.5 843,955 + ABZR87_RS04020 0.11 +0.4 843,955 + ABZR87_RS04020 0.11 -0.5 843,955 + ABZR87_RS04020 0.11 -0.7 843,955 + ABZR87_RS04020 0.11 +0.6 843,955 + ABZR87_RS04020 0.11 +0.8 843,956 - ABZR87_RS04020 0.11 +0.7 843,956 - ABZR87_RS04020 0.11 +0.7 843,998 + ABZR87_RS04020 0.16 -0.4 843,998 + ABZR87_RS04020 0.16 -0.8 844,013 + ABZR87_RS04020 0.17 +0.1 844,013 + ABZR87_RS04020 0.17 -1.5 844,013 + ABZR87_RS04020 0.17 -0.1 844,013 + ABZR87_RS04020 0.17 +0.0 844,014 - ABZR87_RS04020 0.17 +0.6 844,064 - ABZR87_RS04020 0.23 -0.7
Or see this region's nucleotide sequence